cluster # 4544

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Schistosoma mansoni
cluster # 4544 cluster # 4544 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4544#0 length = 279 sequences # 1

consensus_4544#1 length = 246 sequences # 1
consensus_4544#2 length = 85 sequences # 1

consensusID : consensus_4544#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [GAGCTCGGTACCCTGCCATCACCGACTGCCGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAAC]

[+] EMBL CD168535             [GAGCTCGGTACCCTGCCATCACCGACTGCCGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAAC]




>consensus_4544#0
GAGCTCGGTACCCTGCCATCACCGACTGCCGGGAACGATTGGTTGAGCGTGTCGGTGAGA
TGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGT
CGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAG
TGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTG
AGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAAC

consensusID : consensus_4544#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 246
fasta sequence

                              [TGTGAAATCCCCAGAAAACGTCTGTGTACACCTAAGCAATTTATTAAATTCTCCAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGACACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTGGGTGAAGGCGTATTTGAAGGTGAGCACGGAAGCCGAGTCGGCAGTCGAAGTGTA]

[+] EMBL CD060502             [TGTGAAATCCCCAGAAAACGTCTGTGTACACCTAAGCAATTTATTAAATTCTCCAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGACACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTGGGTGAAGGCGTATTTGAAGGTGAGCACGGAAGCCGAGTCGGCAGTCGAAGTGTA]




>consensus_4544#1
TGTGAAATCCCCAGAAAACGTCTGTGTACACCTAAGCAATTTATTAAATTCTCCAGGTTG
AATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGA
CTGCAGCACAACCGGACACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAA
TATGGTGAAGTGGGTGAAGGCGTATTTGAAGGTGAGCACGGAAGCCGAGTCGGCAGTCGA
AGTGTA

consensusID : consensus_4544#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 85
fasta sequence

                              [TAGAGATTCCAGTTCACGGTAGCCGTGTTGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGCAAAGT]

[+] EMBL CD059364             [TAGAGATTCCAGTTCACGGTAGCCGTGTTGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGCAAAGT]




>consensus_4544#2
TAGAGATTCCAGTTCACGGTAGCCGTGTTGGCAGTCGAAGTGTTCGGTGAGACATTGGGG
CAAGTTGAAGCGGACGCAGCAAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4544#0      GAGCTCGGTACCCTGCCATCACCGACTGCCGGGAACGATTGGTTGAGCGTGTCGGTGAGA 60
consensus_4544#2      ------------------------------------------------------------
consensus_4544#1      -------------------TGTGAAATCCCCAGAAAACGTCTGTGTACACCTAAGCAATT 41
                                                                                  

consensus_4544#0      TGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGT 120
consensus_4544#2      ------------------------------TAGAGATTCCAGTTCA--CGGTAGCCGTGT 28
consensus_4544#1      TATTAAATTCTCCAGGTTGAATCGG--AACGTGTGTCTGT-GTTCG--CTCCAGTCGAAT 96
                                                      *    *   * *    *   ** **  *

consensus_4544#0      CGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAG-AAAGTGAA 179
consensus_4544#2      TGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGCAAAGT--- 85
consensus_4544#1      TGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGACACGGGAACGATTGGTTGAG 156
                       **     ** * * * *  *****    *  ***   **  ***   *       *   

consensus_4544#0      GTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCT 239
consensus_4544#2      ------------------------------------------------------------
consensus_4544#1      CGTGTCGGTGAGATGGAGGCGGAA--TATGGTGAAGTGGGTGAAGGCGTATTTGAAGGTG 214
                                                                                  

consensus_4544#0      GAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAAC 279
consensus_4544#2      ----------------------------------------
consensus_4544#1      AGCACGGAAGCCGAGTCGGCAGTCGAAGTGTA-------- 246