cluster # 4547

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Schistosoma mansoni
cluster # 4547 cluster # 4547 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4547#0 length = 606 sequences # 2

consensus_4547#1 length = 331 sequences # 1

consensusID : consensus_4547#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 606
fasta sequence

                              [TCCAGGACGCACGTTTCGTTTCGTTTGAGACTCGTCAGGATTCAGTAGCTAAGTGAAGTTTAAATTCACTTAGTATTGTTTGTTTGAAAATAAAGTGAAAATATGGGTAACCTAATCGACTTTAATTTCTAAATTAAATAAAGGTACAGTGATTTCGCTATGGTCTGAGAACCATTCAGTAAATACTTCATTTGTCTCAGACTTGTCTGTTCCCTCGTTTCCACATCAATCACACACTGTTCTCATTCTCTTCTCTTTAATCTTCTTAACCTCCTGTAGCCAGACACTTCACTTTCGTCTGATGATACTTACTACTTATATCTGTCGACATCAGTAGCACACTATATTAGTAATGAACTGCGGCTTTACAGATCCACGACCACGCGTCTGGCAATCGAACCTAAGGCTTTCGATGTCGTGCATGAACGCCTAACCTGCCAATCATTGATCCGGCATCCAATCGTGCAAATGTCTAACTTCAGAGAGTTAGCAATGTTGACCAATAATCTTCCATTTTCTTTGGTTGGNCACTTGCTTCACATTCGACAACTNTGGACTNCTCTAGTCACAACTTATCACTANACTTCTGGAATTTCCTTCTCGAAG]

[+] EMBL CD194672             [TCCAGGACGCACGTTTCGTTTCGTTTGAGACTCGTCAGGATTCAGTAGCTAAGTGAAGTTTAAATTCACTTAGTATTGTTTGTTTGAAAATAAAGTGAAAATATGGGTAACCTAATCGACTTTAATTTCTAAATTAAATAAAGGTACAGTGATTTCGCTATGGTCTGAGAACCATTCAGTAAATACTTCATTTGTCTCAGACTTGTCTGTTCCCTCGTTTCCACATCAATCACACACTGTTCTCATTCTCTTCTCTTTAATCTTCTTAACCTCCTGTAGCCAGACACTTCACTTTCGTCTGATGATACTTACTACTTATATCTGTCGACATCAGTAGCACACTATATTAGTAATGAACTGCGGCTTTACAGATCCACGACCACGCGTCTGGCAATCGAACCTAAGGCTTTCGATGTCGTGCATGAACGCCTAACCTGCCAATCATTGATCCGGCATCCAATCGTGCAAATGTCTAACTTCAGAGAGTTAGCAATGTTGACCAATAATCTTCCATTTTCTTTGGTTGGNCACTTGCTTCACATTCGACAACTNTGGACTNCTCTAGTCACAACTTATCACTANACTTCTGGAATTTCCTTCTCGAAG]
[+] EMBL CD194706             [TCCAGGACGCACGTTTCGTTTCGTTTGACACTCGTCAGGATTCAGTAGCTAAGTGAAGTTTAAATTCACTTAATATTGTTTGTATGAAAATAAAGTGAAAATATGGGTGACCTAATCGACTTTAATTTATAAATTAAATAAAGGTACAGTGATTTCGCTATGGTCTGAGAACCATTCAGTAAATACTTCATTTGACTCACACTTGTCTGTTCCCTCGTTTCCACATCAATCACACACTGTTCTCATTCTCTTGTCTTTAATCTTCTTAACCTCCTGTAGCCAGACACTTCACTTTCGTGTGATGATACTTACTACTTATATCTGTCGACATCAGTAGCACACTATATTAATAATGAACTGCGGCTTTACAGATCCACGACCACACGTCTGGCAATCGAACCTAAGGCTTTCGATGTCGTGCATGAACGCCTAACCTGCCAATCATTGATCCGGCATCCAATCGTGCAAATGTCTAACTTCAGAGAGTTAGCAATGTTGACCAATAATCTTCCATTTTCTTTGGTTGGCAACTTGCTTCACATTCGACAACTTTGGACTCCTCTAGTCACAACTTATCACTAAACTT                    ]




>consensus_4547#0
TCCAGGACGCACGTTTCGTTTCGTTTGAGACTCGTCAGGATTCAGTAGCTAAGTGAAGTT
TAAATTCACTTAGTATTGTTTGTTTGAAAATAAAGTGAAAATATGGGTAACCTAATCGAC
TTTAATTTCTAAATTAAATAAAGGTACAGTGATTTCGCTATGGTCTGAGAACCATTCAGT
AAATACTTCATTTGTCTCAGACTTGTCTGTTCCCTCGTTTCCACATCAATCACACACTGT
TCTCATTCTCTTCTCTTTAATCTTCTTAACCTCCTGTAGCCAGACACTTCACTTTCGTCT
GATGATACTTACTACTTATATCTGTCGACATCAGTAGCACACTATATTAGTAATGAACTG
CGGCTTTACAGATCCACGACCACGCGTCTGGCAATCGAACCTAAGGCTTTCGATGTCGTG
CATGAACGCCTAACCTGCCAATCATTGATCCGGCATCCAATCGTGCAAATGTCTAACTTC
AGAGAGTTAGCAATGTTGACCAATAATCTTCCATTTTCTTTGGTTGGNCACTTGCTTCAC
ATTCGACAACTNTGGACTNCTCTAGTCACAACTTATCACTANACTTCTGGAATTTCCTTC
TCGAAG

consensusID : consensus_4547#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [TGGCAATAGAACGTAAGGCTTTGGATGTCGTGCATGTACGCATGACTTGCCAATCATTGATCCGGCATCCAATCGTGCAAATGTCTAACTTCAGAGAGTTAGCAATGTTGACCAATAATCTTCCATTTTCTTTGGTTGGCAACTTGCTTCACATTCGACAACTTTGGACTCCGCTAGTCACAACTTATCAATAAACTTCTGAAATTTCCTTCTAGAAGTGAATATAACGTTATATGTTGGTTCGGTGGCTCAGAGGTCAAGAGCCCGGCATGACACCAAAAGTCTTGGATTCGGTCTCCTCATGAGTTGCGAATGTGCACTGATGAGCAGT]

[-] EMBL CD149883             [TGGCAATAGAACGTAAGGCTTTGGATGTCGTGCATGTACGCATGACTTGCCAATCATTGATCCGGCATCCAATCGTGCAAATGTCTAACTTCAGAGAGTTAGCAATGTTGACCAATAATCTTCCATTTTCTTTGGTTGGCAACTTGCTTCACATTCGACAACTTTGGACTCCGCTAGTCACAACTTATCAATAAACTTCTGAAATTTCCTTCTAGAAGTGAATATAACGTTATATGTTGGTTCGGTGGCTCAGAGGTCAAGAGCCCGGCATGACACCAAAAGTCTTGGATTCGGTCTCCTCATGAGTTGCGAATGTGCACTGATGAGCAGT]




>consensus_4547#1
TGGCAATAGAACGTAAGGCTTTGGATGTCGTGCATGTACGCATGACTTGCCAATCATTGA
TCCGGCATCCAATCGTGCAAATGTCTAACTTCAGAGAGTTAGCAATGTTGACCAATAATC
TTCCATTTTCTTTGGTTGGCAACTTGCTTCACATTCGACAACTTTGGACTCCGCTAGTCA
CAACTTATCAATAAACTTCTGAAATTTCCTTCTAGAAGTGAATATAACGTTATATGTTGG
TTCGGTGGCTCAGAGGTCAAGAGCCCGGCATGACACCAAAAGTCTTGGATTCGGTCTCCT
CATGAGTTGCGAATGTGCACTGATGAGCAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4547#0      TCCAGGACGCACGTTTCGTTTCGTTTGAGACTCGTCAGGATTCAGTAGCTAAGTGAAGTT 60
consensus_4547#1      ------------------------------------------------------------
                                                                                  

consensus_4547#0      TAAATTCACTTAGTATTGTTTGTTTGAAAATAAAGTGAAAATATGGGTAACCTAATCGAC 120
consensus_4547#1      ------------------------------------------------------------
                                                                                  

consensus_4547#0      TTTAATTTCTAAATTAAATAAAGGTACAGTGATTTCGCTATGGTCTGAGAACCATTCAGT 180
consensus_4547#1      ------------------------------------------------------------
                                                                                  

consensus_4547#0      AAATACTTCATTTGTCTCAGACTTGTCTGTTCCCTCGTTTCCACATCAATCACACACTGT 240
consensus_4547#1      ------------------------------------------------------------
                                                                                  

consensus_4547#0      TCTCATTCTCTTCTCTTTAATCTTCTTAACCTCCTGTAGCCAGACACTTCACTTTCGTCT 300
consensus_4547#1      ------------------------------------------------------------
                                                                                  

consensus_4547#0      GATGATACTTACTACTTATATCTGTCGACATCAGTAGCACACTATATTAGTAATGAACTG 360
consensus_4547#1      ------------------------------------------------------------
                                                                                  

consensus_4547#0      CGGCTTTACAGATCCACGACCACGCGTCTGGCAATCGAACCTAAGGCTTTCGATGTCGTG 420
consensus_4547#1      ----------------------------TGGCAATAGAACGTAAGGCTTTGGATGTCGTG 32
                                                  ******* **** ********* *********

consensus_4547#0      CATGAACGCCTAACCTGCCAATCATTGATCCGGCATCCAATCGTGCAAATGTCTAACTTC 480
consensus_4547#1      CATGTACGCATGACTTGCCAATCATTGATCCGGCATCCAATCGTGCAAATGTCTAACTTC 92
                      **** **** * ** *********************************************

consensus_4547#0      AGAGAGTTAGCAATGTTGACCAATAATCTTCCATTTTCTTTGGTTGGNCACTTGCTTCAC 540
consensus_4547#1      AGAGAGTTAGCAATGTTGACCAATAATCTTCCATTTTCTTTGGTTGGCAACTTGCTTCAC 152
                      ***********************************************  ***********

consensus_4547#0      ATTCGACAACTNTGGACTNCTCTAGTCACAACTTATCACTANACTTCTGGAATTTCCTTC 600
consensus_4547#1      ATTCGACAACTTTGGACTCCGCTAGTCACAACTTATCAATAAACTTCTGAAATTTCCTTC 212
                      *********** ****** * ***************** ** ******* **********

consensus_4547#0      TCGAAG------------------------------------------------------ 606
consensus_4547#1      TAGAAGTGAATATAACGTTATATGTTGGTTCGGTGGCTCAGAGGTCAAGAGCCCGGCATG 272
                      * ****                                                      

consensus_4547#0      -----------------------------------------------------------
consensus_4547#1      ACACCAAAAGTCTTGGATTCGGTCTCCTCATGAGTTGCGAATGTGCACTGATGAGCAGT 331