cluster # 4548

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Schistosoma mansoni
cluster # 4548 cluster # 4548 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4548#0 length = 406 sequences # 2

consensus_4548#1 length = 225 sequences # 1

consensusID : consensus_4548#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 406
fasta sequence

                              [ATGAATACGCTATTTAGAAGTATATTTGTTGTAGTCGTTGTATATGCCTATTTTGATATGGCGAATGGTGTACCGGAGCCCCCTAGGGTCCCCGATGAAGATGCAGTACCAGTGAGAGCAAAACCCGCTACTCCAATCAAGATATCTACTGATAAGATACCAGTGAACAAGACAATGAAAATACAAACCACACCGTCCAAAG-AAAAGAAACAAAAACCTG-ATCCGAAGAGATATAAAAGATCTTCATACCAAAAAGATAAGAAGGCCAAATCGTCATCATCAACTTTG-ACCATCGGGTATCCAATCCTCTTCATAACTACACCATTTGTTATTTCAAAGTTCCTTCTTTGAATTTTACACCAATTTTGATATATTGCTATGAACTCGGATAGTGTTCATTTTTATC]

[+] EMBL CD140595             [ATGAATACGCTATTTAGAAGTATATTTGTTGTAGTCGTTGTATATGCCTATTTTGATATGGCGAATGGTGTACCGGAGCCCCCTAGGGTCCCCGATGAAGATGCAGTACCAGTGAGAGCAAAACCCGCTACTCCAATCAAGATATCTACTGATAAGATACCAGTGAACAAGACAATGAAAATACAAACCACACCGTCCAAAG AAAAGAAACAAAAACCTG ATCCGAAGAGATATAAAAGATCTTCATACCAAAAAGATAAGAAGGCCAAATCGTCATCATCAACTTTG ACCATCGGGTATCCAATCCTCTTCATAACTACACCATTTGTTATTTCAAAGTTCCTTCTTTGAATTTTACACCAATTTTGATATATTGCTATGAACTCGGATAGTGTTCATTTTTATC]
[+] EMBL AA559652             [                                AGTCGTTGTATATGCCTATTTTGATATGGCGAATGGTGTACCGGAGCCCCCTAGGGTCCCCGATGAAGATGCAGTNCCAGTGAGAGCAAAACCCGCTACTCCAATCAAGATATCTACTGATAAGATACCAGTGAACAAGACAATGANAATACAAACCACACCGTCCAAAGAAAAAGAAACAAAAACCTGCATCCGAAGAGATATAAAAGATCTTCATACCAAAAAGATAAGAAGGCCAAATCGTCATCATCAACTTTGAACCATCGGGTATCCAATCCTCTTCATAACTACCCCA                                                                                  ]




>consensus_4548#0
ATGAATACGCTATTTAGAAGTATATTTGTTGTAGTCGTTGTATATGCCTATTTTGATATG
GCGAATGGTGTACCGGAGCCCCCTAGGGTCCCCGATGAAGATGCAGTACCAGTGAGAGCA
AAACCCGCTACTCCAATCAAGATATCTACTGATAAGATACCAGTGAACAAGACAATGAAA
ATACAAACCACACCGTCCAAAGAAAAGAAACAAAAACCTGATCCGAAGAGATATAAAAGA
TCTTCATACCAAAAAGATAAGAAGGCCAAATCGTCATCATCAACTTTGACCATCGGGTAT
CCAATCCTCTTCATAACTACACCATTTGTTATTTCAAAGTTCCTTCTTTGAATTTTACAC
CAATTTTGATATATTGCTATGAACTCGGATAGTGTTCATTTTTATC

consensusID : consensus_4548#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 225
fasta sequence

                              [GAAAGGAACAATGAATACGCTATTTAGAAGTATATTTGTTGTAGTCGTTGTATATGCCTATTTTGATATGGCGAATGGTGTACCGGAGCCCCCTAGGGTCCCCGATGAAGATGCAGTACCAGTGAGAGCAAAACCCGCTACTCCAATCAAGATATCTACTGATAAGATACCAGTGAACAAGACAATGAAAATACAAACCACACCACCCATCACCTGAAGTCGGGG]

[+] EMBL CD134150             [GAAAGGAACAATGAATACGCTATTTAGAAGTATATTTGTTGTAGTCGTTGTATATGCCTATTTTGATATGGCGAATGGTGTACCGGAGCCCCCTAGGGTCCCCGATGAAGATGCAGTACCAGTGAGAGCAAAACCCGCTACTCCAATCAAGATATCTACTGATAAGATACCAGTGAACAAGACAATGAAAATACAAACCACACCACCCATCACCTGAAGTCGGGG]




>consensus_4548#1
GAAAGGAACAATGAATACGCTATTTAGAAGTATATTTGTTGTAGTCGTTGTATATGCCTA
TTTTGATATGGCGAATGGTGTACCGGAGCCCCCTAGGGTCCCCGATGAAGATGCAGTACC
AGTGAGAGCAAAACCCGCTACTCCAATCAAGATATCTACTGATAAGATACCAGTGAACAA
GACAATGAAAATACAAACCACACCACCCATCACCTGAAGTCGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4548#0      ----------ATGAATACGCTATTTAGAAGTATATTTGTTGTAGTCGTTGTATATGCCTA 50
consensus_4548#1      GAAAGGAACAATGAATACGCTATTTAGAAGTATATTTGTTGTAGTCGTTGTATATGCCTA 60
                                **************************************************

consensus_4548#0      TTTTGATATGGCGAATGGTGTACCGGAGCCCCCTAGGGTCCCCGATGAAGATGCAGTACC 110
consensus_4548#1      TTTTGATATGGCGAATGGTGTACCGGAGCCCCCTAGGGTCCCCGATGAAGATGCAGTACC 120
                      ************************************************************

consensus_4548#0      AGTGAGAGCAAAACCCGCTACTCCAATCAAGATATCTACTGATAAGATACCAGTGAACAA 170
consensus_4548#1      AGTGAGAGCAAAACCCGCTACTCCAATCAAGATATCTACTGATAAGATACCAGTGAACAA 180
                      ************************************************************

consensus_4548#0      GACAATGAAAATACAAACCACACCGTCCAAAGAAAAGAAACAAAAACCTGATCCGAAGAG 230
consensus_4548#1      GACAATGAAAATACAAACCACACCACCCATCACCTGAAGTCGGGG--------------- 225
                      ************************  ***        *  *                   

consensus_4548#0      ATATAAAAGATCTTCATACCAAAAAGATAAGAAGGCCAAATCGTCATCATCAACTTTGAC 290
consensus_4548#1      ------------------------------------------------------------
                                                                                  

consensus_4548#0      CATCGGGTATCCAATCCTCTTCATAACTACACCATTTGTTATTTCAAAGTTCCTTCTTTG 350
consensus_4548#1      ------------------------------------------------------------
                                                                                  

consensus_4548#0      AATTTTACACCAATTTTGATATATTGCTATGAACTCGGATAGTGTTCATTTTTATC 406
consensus_4548#1      --------------------------------------------------------