These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_455#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence [TCTGTAATGGACAATAACTAAAATATTCAAATGGTAATGATAAAAGACGTTGTAATAGATTTGGTGATGGACCACATTGTAAACTTGTTTGATTATCCGAATTCAAAACGCATAAATAACCAATACATAATATCACTTCATGTAATATATTATTAGTTATTTCATAGATATGATGCTTTGAAAACTTGCTATCAATGGCTTGAGTATTATTACCATAGAAACTAGTCAACTTCGTCATAGATTTAGATGAAATGTTTGTTGAAGAGGAATTTTTAGGTTTACCAA] [+] EMBL CD138477 [TCTGTAATGGACAATAACTAAAATATTCAAATGGTAATGATAAAAGACGTTGTAATAGATTTGGTGATGGACCACATTGTAAACTTGTTTGATTATCCGAATTCAAAACGCATAAATAACCAATACATAATATCACTTCATGTAATATATTATTAGTTATTTCATAGATATGATGCTTTGAAAACTTGCTATCAATGGCTTGAGTATTATTACCATAGAAACTAGTCAACTTCGTCATAGATTTAGATGAAATGTTTGTTGAAGAGGAATTTTTAGGTTTACCAA] consensusID : consensus_455#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 134 fasta sequence [GTAAACCTAAAAATTCCTCTTCAACAAACATTTCATCTAAATCTATGACGAATTGACTAGTTTCTATGGTAATAATACTCAAGCCATTGATAGCAAGTATGTTATAAAGTTTGGGAAAATAAAGATCCTTAATA] [+] EMBL AW497859 [GTAAACCTAAAAATTCCTCTTCAACAAACATTTCATCTAAATCTATGACGAATTGACTAGTTTCTATGGTAATAATACTCAAGCCATTGATAGCAAGTATGTTATAAAGTTTGGGAAAATAAAGATCCTTAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_455#0 TCTGTAATGGACAATAACTAAAATATTCAAATGGTAATGATAAAAGACGTTGTAATAGAT 60 consensus_455#1 ------------------------------------------------------------ consensus_455#0 TTGGTGATGGACCACATTGTAAACTTGTTTGATTATCCGAATTCAAAACGCATAAATAAC 120 consensus_455#1 -----------------------------------GTAAACCTAAAAATTCCTCTTCAAC 25 * * **** * * *** consensus_455#0 CAATACATAATATCACTTCATGTAATATATTATTAGTTATTTCATAGATATGATGCTTTG 180 consensus_455#1 AAACATTTCATCTAAATCTATGACGAAT-TGACTAGT--TTCTATGGTAATAATACT--- 79 ** * * ** * * * *** ** * * **** ** ** * ** ** ** consensus_455#0 AAAACTTGCTATCAATGGCTTGAGTATTATTACCATAGAAACTAGTCAACTTCGTCATAG 240 consensus_455#1 ----CAAGCCATTGATAGCAAGTATGTTATAAAGTTTGGGAAAATAAAGATCCTTAATA- 134 * ** ** ** ** * * **** * * * * * * * * * *** consensus_455#0 ATTTAGATGAAATGTTTGTTGAAGAGGAATTTTTAGGTTTACCAA 285 consensus_455#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||