cluster # 455

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Schistosoma mansoni
cluster # 455 cluster # 455 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_455#0 length = 285 sequences # 1

consensus_455#1 length = 134 sequences # 1

consensusID : consensus_455#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence

                              [TCTGTAATGGACAATAACTAAAATATTCAAATGGTAATGATAAAAGACGTTGTAATAGATTTGGTGATGGACCACATTGTAAACTTGTTTGATTATCCGAATTCAAAACGCATAAATAACCAATACATAATATCACTTCATGTAATATATTATTAGTTATTTCATAGATATGATGCTTTGAAAACTTGCTATCAATGGCTTGAGTATTATTACCATAGAAACTAGTCAACTTCGTCATAGATTTAGATGAAATGTTTGTTGAAGAGGAATTTTTAGGTTTACCAA]

[+] EMBL CD138477             [TCTGTAATGGACAATAACTAAAATATTCAAATGGTAATGATAAAAGACGTTGTAATAGATTTGGTGATGGACCACATTGTAAACTTGTTTGATTATCCGAATTCAAAACGCATAAATAACCAATACATAATATCACTTCATGTAATATATTATTAGTTATTTCATAGATATGATGCTTTGAAAACTTGCTATCAATGGCTTGAGTATTATTACCATAGAAACTAGTCAACTTCGTCATAGATTTAGATGAAATGTTTGTTGAAGAGGAATTTTTAGGTTTACCAA]




>consensus_455#0
TCTGTAATGGACAATAACTAAAATATTCAAATGGTAATGATAAAAGACGTTGTAATAGAT
TTGGTGATGGACCACATTGTAAACTTGTTTGATTATCCGAATTCAAAACGCATAAATAAC
CAATACATAATATCACTTCATGTAATATATTATTAGTTATTTCATAGATATGATGCTTTG
AAAACTTGCTATCAATGGCTTGAGTATTATTACCATAGAAACTAGTCAACTTCGTCATAG
ATTTAGATGAAATGTTTGTTGAAGAGGAATTTTTAGGTTTACCAA

consensusID : consensus_455#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 134
fasta sequence

                              [GTAAACCTAAAAATTCCTCTTCAACAAACATTTCATCTAAATCTATGACGAATTGACTAGTTTCTATGGTAATAATACTCAAGCCATTGATAGCAAGTATGTTATAAAGTTTGGGAAAATAAAGATCCTTAATA]

[+] EMBL AW497859             [GTAAACCTAAAAATTCCTCTTCAACAAACATTTCATCTAAATCTATGACGAATTGACTAGTTTCTATGGTAATAATACTCAAGCCATTGATAGCAAGTATGTTATAAAGTTTGGGAAAATAAAGATCCTTAATA]




>consensus_455#1
GTAAACCTAAAAATTCCTCTTCAACAAACATTTCATCTAAATCTATGACGAATTGACTAG
TTTCTATGGTAATAATACTCAAGCCATTGATAGCAAGTATGTTATAAAGTTTGGGAAAAT
AAAGATCCTTAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_455#0      TCTGTAATGGACAATAACTAAAATATTCAAATGGTAATGATAAAAGACGTTGTAATAGAT 60
consensus_455#1      ------------------------------------------------------------
                                                                                 

consensus_455#0      TTGGTGATGGACCACATTGTAAACTTGTTTGATTATCCGAATTCAAAACGCATAAATAAC 120
consensus_455#1      -----------------------------------GTAAACCTAAAAATTCCTCTTCAAC 25
                                                            *  * ****  * *    ***

consensus_455#0      CAATACATAATATCACTTCATGTAATATATTATTAGTTATTTCATAGATATGATGCTTTG 180
consensus_455#1      AAACATTTCATCTAAATCTATGACGAAT-TGACTAGT--TTCTATGGTAATAATACT--- 79
                      ** *  * ** * * *  ***    ** * * ****  **  ** *  ** ** **   

consensus_455#0      AAAACTTGCTATCAATGGCTTGAGTATTATTACCATAGAAACTAGTCAACTTCGTCATAG 240
consensus_455#1      ----CAAGCCATTGATAGCAAGTATGTTATAAAGTTTGGGAAAATAAAGATCCTTAATA- 134
                         *  ** **  ** **  *  * **** *   * *  *  *   *  * * * *** 

consensus_455#0      ATTTAGATGAAATGTTTGTTGAAGAGGAATTTTTAGGTTTACCAA 285
consensus_455#1      ---------------------------------------------