cluster # 4552

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Schistosoma mansoni
cluster # 4552 cluster # 4552 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4552#0 length = 707 sequences # 2

consensus_4552#1 length = 361 sequences # 1

consensusID : consensus_4552#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 707
fasta sequence

                              [TAAAAAACGGAAACTTCCTGAAGTACATTGTGCTGAAAATTCTATATTGTACCAAAAACATAATATTGAATAAAACTAATAATAATAGTAATAGTTGGATGAAATATTTCTTACCATCTTCACAATTTATTAGTCCAAGGATTTTCGATTGCAACTGACTTTCCTCGATTTTCGTAGGAATCTGAAAAAAGATTGTTGAATGTATGAGACAAGATCTGCTACCACACAATCGTTTATATGAAATCGAATGATTACTGGAGAAATGTATCATCATTTAGATCATCTCGTTAAAAGCCAACTAATCGCACTCACACTAGGCATACTGATATTCTCAGTTTACTTTCCATGAATGTTCCATCCAATCTGTATAGATATTCTTGTCAAATTCGGTCAAGTGTTATGAACTATCTCTCCATCATGATATGTGGCGATAACTTGTGAGATGAATATCACCGCCTATTGAAATGAAATGAGATTGTGAATATNTGACAGAATGCTGCACTCAGTATATTCCACAGTTAACATTCTGAACAGTCGATCGTCACTACATGAAATAAAACTCAACAGAATATGACTCTTTCCGTATAGTAGGCAAACATTCACAGCCAGTTACTATTTGGCACGAACA-GTTAATGTTTCTTGTGAAAGAACTTTACTTCTGATTATTCACTGTTCATACTGTAGTGAACAGAACACTAGTTGGGTAC]

[+] EMBL CD122337             [TAAAAAACGGAAACTTCCTGAAGTACATTGTGCTGAAAATTCTATATTGTACCAAAAACATAATATTGAATAAAACTAATAATAATAGTAATAGTTGGATGAAATATTTCTTACCATCTTCACAATTTATTAGTCCAAGGATTTTCGATTGCAACTGACTTTCCTCGATTTTCGTAGGAATCTGAAAAAAGATTGTTGAATGTATGAGACAAGATCTGCTACCACACAATCGTTTATATGAAATCGAATGATTACTGGAGAAATGTATCATCATTTAGATCATCTCGTTAAAAGCCAACTAATCGCACTCACACTAGGCATACTGATATTCTCAGTTTACTTTCCATGAATGTTCCATCCAATCTGTATAGATATTCTTGTCAAATTCGGTCAAGTGTTATGAACTATCTCTCCATCATGATATGTGGCGATAACTTGTGAGATGAATATCACCGCCTATTGAAATGAAATGAGATTGTGAATATNTGACAGAATGCTGCACTCAGTATATTCCACAGTTAACATTCTGAACAGTCGATCGTCACTACATGAAATAAAACTCAACAGAATATGACTCTTTCCGTATAGTAGGCAAACATTCACAGCCAGTTACTATTTGGCACGAACA GTTAATGTTTCTTGTGAAAGAACTTTACTTCTGATTATTCACTGTTCATACTGTAGTGAACAGAACACTAGTTGGGTA ]
[-] EMBL CD122324             [                                                                                                                                                                                                                                           ATATGAAATCGAATGATTACTGGAGAAATGTATCATCATTTAGATCATCTCGTTAAAAGCCAACTAATCGCACTCACACTAGGCATACTGATATTCTCAGTTTACTTTCCATGAATGTTCCATCCAATCTGTATAGATATTCTTGTCAAATTCGGTCAAGTGTTATGAACTATCTCTCCATCATGATATGTGGCGATAACTTGTGAGATGAATATCACCGCCTATTGAAATGAAATGAGATTGTGAATATTTGACAGAATGCTGCACTCAGTATATTCCACAGTTAACATTCTGAACAGTCGATCGTCACTACATGAAATAAAACTCAACAGAATATGACTCTTTCCGTATAGTAGGCAAACATTCACAGCCAGTTACTATTTGGCACGAACAGGTTAATGTTTTTTGTGAAAGAACTTTACTTCTGATTATTCACTGTTCATACTGTAGTGAACAGAACACTAGTTGGGTAC]




>consensus_4552#0
TAAAAAACGGAAACTTCCTGAAGTACATTGTGCTGAAAATTCTATATTGTACCAAAAACA
TAATATTGAATAAAACTAATAATAATAGTAATAGTTGGATGAAATATTTCTTACCATCTT
CACAATTTATTAGTCCAAGGATTTTCGATTGCAACTGACTTTCCTCGATTTTCGTAGGAA
TCTGAAAAAAGATTGTTGAATGTATGAGACAAGATCTGCTACCACACAATCGTTTATATG
AAATCGAATGATTACTGGAGAAATGTATCATCATTTAGATCATCTCGTTAAAAGCCAACT
AATCGCACTCACACTAGGCATACTGATATTCTCAGTTTACTTTCCATGAATGTTCCATCC
AATCTGTATAGATATTCTTGTCAAATTCGGTCAAGTGTTATGAACTATCTCTCCATCATG
ATATGTGGCGATAACTTGTGAGATGAATATCACCGCCTATTGAAATGAAATGAGATTGTG
AATATNTGACAGAATGCTGCACTCAGTATATTCCACAGTTAACATTCTGAACAGTCGATC
GTCACTACATGAAATAAAACTCAACAGAATATGACTCTTTCCGTATAGTAGGCAAACATT
CACAGCCAGTTACTATTTGGCACGAACAGTTAATGTTTCTTGTGAAAGAACTTTACTTCT
GATTATTCACTGTTCATACTGTAGTGAACAGAACACTAGTTGGGTAC

consensusID : consensus_4552#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [TATATTGTACCAAAAATATAATACTGAATAAAGCTAATAAAAATAATAGTTATAATTCGCTGAAATATTTCTTACTTCCTCCACAAATTATTGTTCCAACGATTCTCGTTTTGAACTGATTTTCCCCAATTTCCGCAGGAATCTGAAAAAAGATTGTTGAATGTCTGAGACAAGATCTGATACCACACAATCATCTATATGAAATCGAATAATTACTGGAGAAAAGTATCATCATTTAGATCATCTCATTAAAAGCCAACTAATCGCACTCACACTACGCATACTGATATTCTCAGTTTACTTTCCATGAATGTTCCATCCAATGTGTACAGATATTCTTGTCAACTTCGGTCAAGTGTTA]

[-] EMBL CD112431             [TATATTGTACCAAAAATATAATACTGAATAAAGCTAATAAAAATAATAGTTATAATTCGCTGAAATATTTCTTACTTCCTCCACAAATTATTGTTCCAACGATTCTCGTTTTGAACTGATTTTCCCCAATTTCCGCAGGAATCTGAAAAAAGATTGTTGAATGTCTGAGACAAGATCTGATACCACACAATCATCTATATGAAATCGAATAATTACTGGAGAAAAGTATCATCATTTAGATCATCTCATTAAAAGCCAACTAATCGCACTCACACTACGCATACTGATATTCTCAGTTTACTTTCCATGAATGTTCCATCCAATGTGTACAGATATTCTTGTCAACTTCGGTCAAGTGTTA]




>consensus_4552#1
TATATTGTACCAAAAATATAATACTGAATAAAGCTAATAAAAATAATAGTTATAATTCGC
TGAAATATTTCTTACTTCCTCCACAAATTATTGTTCCAACGATTCTCGTTTTGAACTGAT
TTTCCCCAATTTCCGCAGGAATCTGAAAAAAGATTGTTGAATGTCTGAGACAAGATCTGA
TACCACACAATCATCTATATGAAATCGAATAATTACTGGAGAAAAGTATCATCATTTAGA
TCATCTCATTAAAAGCCAACTAATCGCACTCACACTACGCATACTGATATTCTCAGTTTA
CTTTCCATGAATGTTCCATCCAATGTGTACAGATATTCTTGTCAACTTCGGTCAAGTGTT
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4552#0      TAAAAAACGGAAACTTCCTGAAGTACATTGTGCTGAAAATTCTATATTGTACCAAAAACA 60
consensus_4552#1      ------------------------------------------TATATTGTACCAAAAATA 18
                                                                **************** *

consensus_4552#0      TAATATTGAATAAAACTAATAA---TAATAGTAATAGTTGGATGAAATATTTCTTACCAT 117
consensus_4552#1      TAATACTGAATAAAGCTAATAAAAATAATAGTTATAATTCGCTGAAATATTTCTTACTTC 78
                      ***** ******** *******   ******* *** ** * ***************   

consensus_4552#0      CTTCACAATTTATTAGTCCAAGGATTTTCGATTGCAACTGACTTTCCTCGATTTTCGTAG 177
consensus_4552#1      CTCCACAAATTATTGTTCCAACGATTCTCGTTTTGAACTGATTTTCCCCAATTTCCGCAG 138
                      ** ***** *****  ***** **** *** **  ****** ***** * **** ** **

consensus_4552#0      GAATCTGAAAAAAGATTGTTGAATGTATGAGACAAGATCTGCTACCACACAATCGTTTAT 237
consensus_4552#1      GAATCTGAAAAAAGATTGTTGAATGTCTGAGACAAGATCTGATACCACACAATCATCTAT 198
                      ************************** ************** ************ * ***

consensus_4552#0      ATGAAATCGAATGATTACTGGAGAAATGTATCATCATTTAGATCATCTCGTTAAAAGCCA 297
consensus_4552#1      ATGAAATCGAATAATTACTGGAGAAAAGTATCATCATTTAGATCATCTCATTAAAAGCCA 258
                      ************ ************* ********************** **********

consensus_4552#0      ACTAATCGCACTCACACTAGGCATACTGATATTCTCAGTTTACTTTCCATGAATGTTCCA 357
consensus_4552#1      ACTAATCGCACTCACACTACGCATACTGATATTCTCAGTTTACTTTCCATGAATGTTCCA 318
                      ******************* ****************************************

consensus_4552#0      TCCAATCTGTATAGATATTCTTGTCAAATTCGGTCAAGTGTTATGAACTATCTCTCCATC 417
consensus_4552#1      TCCAATGTGTACAGATATTCTTGTCAACTTCGGTCAAGTGTTA----------------- 361
                      ****** **** *************** ***************                 

consensus_4552#0      ATGATATGTGGCGATAACTTGTGAGATGAATATCACCGCCTATTGAAATGAAATGAGATT 477
consensus_4552#1      ------------------------------------------------------------
                                                                                  

consensus_4552#0      GTGAATATNTGACAGAATGCTGCACTCAGTATATTCCACAGTTAACATTCTGAACAGTCG 537
consensus_4552#1      ------------------------------------------------------------
                                                                                  

consensus_4552#0      ATCGTCACTACATGAAATAAAACTCAACAGAATATGACTCTTTCCGTATAGTAGGCAAAC 597
consensus_4552#1      ------------------------------------------------------------
                                                                                  

consensus_4552#0      ATTCACAGCCAGTTACTATTTGGCACGAACAGTTAATGTTTCTTGTGAAAGAACTTTACT 657
consensus_4552#1      ------------------------------------------------------------
                                                                                  

consensus_4552#0      TCTGATTATTCACTGTTCATACTGTAGTGAACAGAACACTAGTTGGGTAC 707
consensus_4552#1      --------------------------------------------------