cluster # 4556

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Schistosoma mansoni
cluster # 4556 cluster # 4556 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4556#0 length = 929 sequences # 2

consensus_4556#1 length = 205 sequences # 1

consensusID : consensus_4556#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 929
fasta sequence

                              [TAATTTTAATTGGATTGATCATTTTCGAATCTTTTCTACGACTTATATTACCAGCTAGAGCATTTAAAATTGCACCTTCATTAAATTCATCTACTGTTTCATCATTATCATCTGATATGTTTATTGTTAATAATGACAAAGTTGGTGATCGATCATCAACGCTTCATTCTCATCATCGTCCTAATTATAAATCGAAAATGTAAATTATTGGATCTATATATATATTACATAATAATCTTTAACTATTATTTGATAATTATTAAACAATAAAAATAGCACTTTGTGTTTCCTTTTCTTCTTGTTTTAAAAAAAAAAAGATTTCTTCATTATTTTCATTTAACAATGTTTATTTTATCCCCCTTCATAGATAATTACATAGAGTTAGTCATTTTTCCACTCTCTAAGTGTTATCTTGATATTTTGATTTAGATTTTATCAGTTTAATTGTCCTCTGTTTCATATTGTCAATTTATTTCATTCTGATATGTTTATGTTATATCTTGTGGTCGAATGGATACCCAATTAATGTGTGACGTGATAAGACCTTCAATTAGAGAGCAGTGAATTATCGATTGGAATAATGACACACG-AAAACCTTACGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTAGTCACTATTATTATCAGGACACAACAGTTTATTATTATTATCATTGAAAATTTACCGCTCTCTTGTCTGGTAATCACGAGAATATATATATGTCCANCATGGGAAGCGCTGTGAAGTTGTGGCTTNGTTTTTCCAAAACAACAATATNATCAATATGAAAAGGATAATTATTTGTTTANTCGTCTCATCAGNTACTTNNCCTNCCCCTCNCTTTTANTATGTNCCCTTATGAAATTNGGNTCTTCAAAATACATTACTTTTTTATTCCCCCTAATTTTAAAGGAAAAGTCT]

[+] EMBL AI976777             [TAATTTTAATTGGATTGATCATTTTCGAATCTTTTCTACGACTTATATTACCAGCTAGAGCATTTAAAATTGCACCTTCATTAAATTCATCTACTGTTTCATCATTATCATCTGATATGTTTATTGTTAATAATGACAAAGTTGGTGATCGATCATCAACGCTTCATTCTCATCATCGTCCTAATTATAAATCGAAAATGTAAATTATTGGATCTATATATATATTACATAATAATCTTTAACTATTATTTGATAATTATTAAACAATAAAAATAGCACTTTGTGTTTCCTTTTCTTCTTGTTTTAAAAAAAAAAAGATTTCTTCATTATTTTCATTTAACAATGTTTATTTTATCCCCCTTCATAGATAATTACATAGAGTTAGTCATTTTTCCACTCTCTAAGTGTTATCTTGATATTTTGATTTAGATTTTATCAGTTTAATTGTCCTCTGTTTCATATTGTCAATTTATTTCATTCTGATATGTTTATGTTATATCTTGTGGTCGAATGGATACCCAATTAATGTGTGACGTGATAAGACCTTCAATTAGAGAGCAGTGAATTATCGATTGGAATAATGACACACG AAAACCTTACGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTAGTCACTATTATTATCAGGACACAACAGTTTATTATTATTATCATTGAAAATTTACCGCTCTCTTGTCTG                                                                                                                                                                                                                              ]
[+] EMBL SM295                [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AATAATGACACACGNAAAACCTTACGAGCAGTCTAGAGCGCTTATCGANCCTGCTTCTGCCTAGTCACTATTATTATCAGGACACAACAGTTTATNATTATTATCATTGAAATTNTNCCGCTCTCTTGTCTGGTAATCACGAGAATATATATATGTCCANCATGGGAAGCGCTGTGAAGTTGTGGCTTNGTTTTTCCAAAACAACAATATNATCAATATGAAAAGGATAATTATTTGTTTANTCGTCTCATCAGNTACTTNNCCTNCCCCTCNCTTTTANTATGTNCCCTTATGAAATTNGGNTCTTCAAAATACATTACTTTTTTATTCCCCCTAATTTTAAAGGAAAAGTCT]




>consensus_4556#0
TAATTTTAATTGGATTGATCATTTTCGAATCTTTTCTACGACTTATATTACCAGCTAGAG
CATTTAAAATTGCACCTTCATTAAATTCATCTACTGTTTCATCATTATCATCTGATATGT
TTATTGTTAATAATGACAAAGTTGGTGATCGATCATCAACGCTTCATTCTCATCATCGTC
CTAATTATAAATCGAAAATGTAAATTATTGGATCTATATATATATTACATAATAATCTTT
AACTATTATTTGATAATTATTAAACAATAAAAATAGCACTTTGTGTTTCCTTTTCTTCTT
GTTTTAAAAAAAAAAAGATTTCTTCATTATTTTCATTTAACAATGTTTATTTTATCCCCC
TTCATAGATAATTACATAGAGTTAGTCATTTTTCCACTCTCTAAGTGTTATCTTGATATT
TTGATTTAGATTTTATCAGTTTAATTGTCCTCTGTTTCATATTGTCAATTTATTTCATTC
TGATATGTTTATGTTATATCTTGTGGTCGAATGGATACCCAATTAATGTGTGACGTGATA
AGACCTTCAATTAGAGAGCAGTGAATTATCGATTGGAATAATGACACACGAAAACCTTAC
GAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTAGTCACTATTATTATCAGGACAC
AACAGTTTATTATTATTATCATTGAAAATTTACCGCTCTCTTGTCTGGTAATCACGAGAA
TATATATATGTCCANCATGGGAAGCGCTGTGAAGTTGTGGCTTNGTTTTTCCAAAACAAC
AATATNATCAATATGAAAAGGATAATTATTTGTTTANTCGTCTCATCAGNTACTTNNCCT
NCCCCTCNCTTTTANTATGTNCCCTTATGAAATTNGGNTCTTCAAAATACATTACTTTTT
TATTCCCCCTAATTTTAAAGGAAAAGTCT

consensusID : consensus_4556#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 205
fasta sequence

                              [TTATGTCCGTTGCATTTCAAGCGGCAAATAATTAATTCACACGTCCCACTCTCATAAGATATTGTCCGTAATGGGAAATGGGATATTATTCCTAATGAATAGAACTATTCCTCCTTCTTTATGATTCTGTCGGCTCTTACCAATGTAAAACCCTCAAGATCAAGTTCCATGCTATCTATAGGCTGCGTCATCCAAGTTTCTCTGA]

[+] EMBL CD165273             [TTATGTCCGTTGCATTTCAAGCGGCAAATAATTAATTCACACGTCCCACTCTCATAAGATATTGTCCGTAATGGGAAATGGGATATTATTCCTAATGAATAGAACTATTCCTCCTTCTTTATGATTCTGTCGGCTCTTACCAATGTAAAACCCTCAAGATCAAGTTCCATGCTATCTATAGGCTGCGTCATCCAAGTTTCTCTGA]




>consensus_4556#1
TTATGTCCGTTGCATTTCAAGCGGCAAATAATTAATTCACACGTCCCACTCTCATAAGAT
ATTGTCCGTAATGGGAAATGGGATATTATTCCTAATGAATAGAACTATTCCTCCTTCTTT
ATGATTCTGTCGGCTCTTACCAATGTAAAACCCTCAAGATCAAGTTCCATGCTATCTATA
GGCTGCGTCATCCAAGTTTCTCTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4556#0      TAATTTTAATTGGATTGATCATTTTCGAATCTTTTCTACGACTTATATTACCAGCTAGAG 60
consensus_4556#1      ------------------------------------------------------------
                                                                                  

consensus_4556#0      CATTTAAAATTGCACCTTCATTAAATTCATCTACTGTTTCATCATTATCATCTGATATGT 120
consensus_4556#1      ------------------------------------------------------------
                                                                                  

consensus_4556#0      TTATTGTTAATAATGACAAAGTTGGTGATCGATCATCAACGCTTCATTCTCATCATCGTC 180
consensus_4556#1      ------------------------------------------------------------
                                                                                  

consensus_4556#0      CTAATTATAAATCGAAAATGTAAATTATTGGATCTATATATATATTACATAATAATCTTT 240
consensus_4556#1      ------------------------------------------------------------
                                                                                  

consensus_4556#0      AACTATTATTTGATAATTATTAAACAATAAAAATAGCACTTTGTGTTTCCTTTTCTTCTT 300
consensus_4556#1      ------------------------------------------------------------
                                                                                  

consensus_4556#0      GTTTTAAAAAAAAAAAGATTTCTTCATTATTTTCATTTAACAATGTTTATTTTATCCCCC 360
consensus_4556#1      ------------------------------------------------------------
                                                                                  

consensus_4556#0      TTCATAGATAATTACATAGAGTTAGTCATTTTTCCACTCTCTAAGTGTTATCTTGATATT 420
consensus_4556#1      ------------------------------------------------------------
                                                                                  

consensus_4556#0      TTGATTTAGATTTTATCAGTTTAATTGTCCTCTGTTTCATATTGTCAATTTATTTCATTC 480
consensus_4556#1      ------------------------------------------------------------
                                                                                  

consensus_4556#0      TGATATGTTTATGTTATATCTTGTGGTCGAATGGATACCCAATTAATGTGTGACGTGATA 540
consensus_4556#1      ------------------------------------------------------------
                                                                                  

consensus_4556#0      AGACCTTCAATTAGAGAGCAGTGAATTATCGATTGGAATAATGACACACGAAAACCTTAC 600
consensus_4556#1      ------------------------------------------------------------
                                                                                  

consensus_4556#0      GAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTAGTCACTATTATTATCAGGACAC 660
consensus_4556#1      ------------------------------------------------------------
                                                                                  

consensus_4556#0      AACAGTTTATTATTATTATCATTGAAAATTTACCGCTCTCTTGTCTGGTAATCACGAGAA 720
consensus_4556#1      ------------------------------------------------------------
                                                                                  

consensus_4556#0      TATATATATGTCCANCATGGGAAGCGCTGTGAAGTTGTGGCTTNGTTTTTCCAAAACAAC 780
consensus_4556#1      -----TTATGTCCGTTGCATTTCAAGCGGCAAATAATTAATTCACACGTCCCACTCTCAT 55
                            *******            ** *  **    *   *      * ***     * 

consensus_4556#0      AATATNATCAATATGAAAAGGATAATTATTTGTTTANTCGTCTCATCAGNTACTTNNCCT 840
consensus_4556#1      AAGATATT--GTCCGTAATGGGAAATGGGATATTATTCCTAATGAATAGA-ACTATTCCT 112
                      ** **  *   *  * ** **  ***    * **    *   * *  **  ***   ***

consensus_4556#0      NCCCCTCNCTTTTANTATGTNCCCTTATGAAATTNGGNTCTTCAAAATACATTACTTTTT 900
consensus_4556#1      CCTTCTTTATGATTCTGTCGGCTCTTACCAATGTAAAACCCTCAAGATCAAGTTCCATGC 172
                       *  **   *  *  * *   * ****  **  *     * **** **  * * *  *  

consensus_4556#0      TATTCCCCCTAATTTTAAAGGAAAAGTCT---- 929
consensus_4556#1      TATCTATAGGCTGCGTCATCCAAGTTTCTCTGA 205
                      ***            * *   **   ***