cluster # 4557

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Schistosoma mansoni
cluster # 4557 cluster # 4557 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4557#0 length = 529 sequences # 1

consensus_4557#1 length = 398 sequences # 2

consensusID : consensus_4557#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 529
fasta sequence

                              [GGGTTGTAGGACCTCCACAAAAGTACAACGGAAGCTAGTGGAAGCACCTGGGAAGGTGCGGCACAGAGGGTGAGACCCCCGTACACGAAAGCGGAAGTTGGCTGGAGGTATCCTGAGTACCTCGGGGCACGAGCGTCCCCGTGGGAAGCTAGGGGAACCATCCTCTAAGGCTAAGTACTACCTGCTGACCGATAGTGAACGAGTACCGTGAGGGAAAGGTGAAAAGCACCCCGAGAGGGGAGTGAAATAGTACCTGAAACCGCGTGCCTACAAACAGTCGGAGCTCGAAAGAGTGACGGCGTACCTTTTGCATAATGAGCCAGCGAGTTGCGCGTCGTGGCGAGGCTAAGCCGAGAGGTGGAGCCGTATGGAAACCGAGTCTGAACAGGGCGAAAGTCACGGCATGCAGACCCGAAGCCAGGCGATCTACCCATGGCCAGGGTGAAGCGCGGGTAACACTGCGTGGAGGCCCGAACTCACCGAGGTTGAAAACTCGGGGGATGAGCTGTGGGTANGAGTGAAAGGCTAA]

[+] EMBL CD088859             [GGGTTGTAGGACCTCCACAAAAGTACAACGGAAGCTAGTGGAAGCACCTGGGAAGGTGCGGCACAGAGGGTGAGACCCCCGTACACGAAAGCGGAAGTTGGCTGGAGGTATCCTGAGTACCTCGGGGCACGAGCGTCCCCGTGGGAAGCTAGGGGAACCATCCTCTAAGGCTAAGTACTACCTGCTGACCGATAGTGAACGAGTACCGTGAGGGAAAGGTGAAAAGCACCCCGAGAGGGGAGTGAAATAGTACCTGAAACCGCGTGCCTACAAACAGTCGGAGCTCGAAAGAGTGACGGCGTACCTTTTGCATAATGAGCCAGCGAGTTGCGCGTCGTGGCGAGGCTAAGCCGAGAGGTGGAGCCGTATGGAAACCGAGTCTGAACAGGGCGAAAGTCACGGCATGCAGACCCGAAGCCAGGCGATCTACCCATGGCCAGGGTGAAGCGCGGGTAACACTGCGTGGAGGCCCGAACTCACCGAGGTTGAAAACTCGGGGGATGAGCTGTGGGTANGAGTGAAAGGCTAA]




>consensus_4557#0
GGGTTGTAGGACCTCCACAAAAGTACAACGGAAGCTAGTGGAAGCACCTGGGAAGGTGCG
GCACAGAGGGTGAGACCCCCGTACACGAAAGCGGAAGTTGGCTGGAGGTATCCTGAGTAC
CTCGGGGCACGAGCGTCCCCGTGGGAAGCTAGGGGAACCATCCTCTAAGGCTAAGTACTA
CCTGCTGACCGATAGTGAACGAGTACCGTGAGGGAAAGGTGAAAAGCACCCCGAGAGGGG
AGTGAAATAGTACCTGAAACCGCGTGCCTACAAACAGTCGGAGCTCGAAAGAGTGACGGC
GTACCTTTTGCATAATGAGCCAGCGAGTTGCGCGTCGTGGCGAGGCTAAGCCGAGAGGTG
GAGCCGTATGGAAACCGAGTCTGAACAGGGCGAAAGTCACGGCATGCAGACCCGAAGCCA
GGCGATCTACCCATGGCCAGGGTGAAGCGCGGGTAACACTGCGTGGAGGCCCGAACTCAC
CGAGGTTGAAAACTCGGGGGATGAGCTGTGGGTANGAGTGAAAGGCTAA

consensusID : consensus_4557#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 398
fasta sequence

                              [TCCAGTTTGCTCTGCTGATTGTCAAATTCCATATTAGCAGGCATATTATTATTATTATTACTATCATTATTATTATTAGCATTATACATACAATAACTGAGGTACTCAGTATTGTCAGTCATTGAAACGCTTTGATTTATAATTCCACTAGGTACTTCAAATGCAGATGACAATGAGGTAGGAGACGAAGCAACAAACTGATGTTTATCAGTGAGATTCGAATGAATTGTCAAGTCATGTAAAACAACACCTTGACCATTTTCACTATAAGGAACGAAATGGTTATCATCATTATTATTAGGCAGAGACTGAAGTGGTGAAGGATGATAAGAATACGCAGTAGAATTATTAAAATAGTCAGTAAGTGATATAACTGCATTATCATTATTCTGTGGTAC]

[+] EMBL CD149385             [TCCAGTTTGCTCTGCTGATTGTCAAATTCCATATTAGCAGGCATATTATTATTATTATTACTATCATTATTATTATTAGCATTATACATACAATAACTGAGGTACTCAGTATTGTCAGTCATTGAAACGCTTTGATTTATAATTCCACTAGGTACTTCAAATGCAGATGACAATGAGGTAGGAGACGAAGCAACAAACTGATGTTTATCAGTGAGATTCGAATGAATTGTCAAGTCATGTAAAACAACACCTTGACCATTTTCACTATAAGGAACGAAATGGTTATCATCATTATTATTAGGCAGAGACTGAAGTGGTGAAGGATGATAAGAATACGCAGTAGAATTATTAAAATAGTCAGTAAGTGATATAACTGCATTATCATTATTCTGTGGTAC]
[+] EMBL CD149279             [TCCAGTTTGCTCTGCTGATTGTCAAATTCCATATTAGCAGGCATATTATTATTATTATTACTATCATTATTATTATTAGCATTATACATACAATAACTGAGGTACTCAGTATTGTCAGTCATTGAAACGCTTTGATTTATAATTCCACTAGGTACTTCAAATGCAGATGACAATGAGGTAGGAGACGAAGCAACAAACTGATGTTTATCAGTGAGATTCGAATGAATTGTCAAGTCATGTAAAACAACACCTTGACCATTCTCACTATAAGGACCGAAATGGTTATCATCATTATTA                                                                                                     ]




>consensus_4557#1
TCCAGTTTGCTCTGCTGATTGTCAAATTCCATATTAGCAGGCATATTATTATTATTATTA
CTATCATTATTATTATTAGCATTATACATACAATAACTGAGGTACTCAGTATTGTCAGTC
ATTGAAACGCTTTGATTTATAATTCCACTAGGTACTTCAAATGCAGATGACAATGAGGTA
GGAGACGAAGCAACAAACTGATGTTTATCAGTGAGATTCGAATGAATTGTCAAGTCATGT
AAAACAACACCTTGACCATTTTCACTATAAGGAACGAAATGGTTATCATCATTATTATTA
GGCAGAGACTGAAGTGGTGAAGGATGATAAGAATACGCAGTAGAATTATTAAAATAGTCA
GTAAGTGATATAACTGCATTATCATTATTCTGTGGTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4557#0      GGGTTGTAGGACCTCCACAAAAGTACAACGGAAGCTAGTGGAAGCACCTGGGAAGGTGCG 60
consensus_4557#1      -------------------------------------------------TCCAGTTTGCT 11
                                                                          *   *** 

consensus_4557#0      GCACAGAGGGTGAGACCCCCGTACACGAAAGCGGAAGTTGGCTGGAGGTATCCTGAGTAC 120
consensus_4557#1      CTGCTGATTGTCAAATTCC-ATATTAGCAGGCATATTATTATTATTATTACTATCATTAT 70
                         * **  ** * *  **  **   * * **  *   *   *     **   * * ** 

consensus_4557#0      CTCGGGGCACGAGCGTCCCCGTGGGAAGCTAGGGGAACCATCCTCTAAGGCTAAGTACTA 180
consensus_4557#1      TATTAT-TAGCATTATACATACAATAACTGAGGTACTCAGTATTGTCAGTC--ATTGAAA 127
                              *  *   * *       **   ***    *  *  * * ** *  * *   *

consensus_4557#0      CCTGCTGACCGATAGTG--AACGAGTACCGTGAGGGAAAGGTGAAAAGCACCCCGAGAGG 238
consensus_4557#1      CGCTTTGATTTATAATTCCACTAGGTACTTCAAATGCAGATGACAATGAGGTAGGAGACG 187
                      *    ***   *** *   *    ****    *  * *      ** *      **** *

consensus_4557#0      GG--AGTGAAATAGTACCTGAAACCGCG-TGCCTACAAACAGTCGGAGCTCGAAAGAGTG 295
consensus_4557#1      AAGCAACAAACTGATGTTTATCAGTGAGATTCGAATGAATTGTCAAGTCATGTAAAA-CA 246
                          *   ** *  *   *   *  * * * *  *  **  ***    *  * ** *   

consensus_4557#0      ACGGCGT-ACCTTTTGCATAATGAGCCAGCGAGTTGCGCGTCGTGGCGAGGCTAAGCCGA 354
consensus_4557#1      ACACCTTGACCATTTTCACTATAAGG-AACGAAATGGTTATCATCATTATTATTAGGCAG 305
                      **  * * *** *** **  ** **  * ***  **    ** *    *   * ** *  

consensus_4557#0      GAGGTGGAGCCGT-ATGGAAACCGAGTCTGAACAGGGCGAAAGTCACGGCATGCAGACCC 413
consensus_4557#1      AGACTGAAGTGGTGAAGGATGATAAGAATACGCAGTAGAATTATTAAAATAGTCAGT--- 362
                          ** **  ** * ***     **  *   ***    *   * *    *  ***    

consensus_4557#0      GAAGCCAGGCGATCTACCCATGGCCAGGGTGAAGCGCGGGTAACACTGCGTGGAGGCCCG 473
consensus_4557#1      -AAGTGATATAACTGCATTATCATTATTCTGTGGTAC----------------------- 398
                       ***  *    *       **    *   **  *  *                       

consensus_4557#0      AACTCACCGAGGTTGAAAACTCGGGGGATGAGCTGTGGGTANGAGTGAAAGGCTAA 529
consensus_4557#1      --------------------------------------------------------