These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [GGGTTGTAGGACCTCCACAAAAGTACAACGGAAGCTAGTGGAAGCACCTGGGAAGGTGCGGCACAGAGGGTGAGACCCCCGTACACGAAAGCGGAAGTTGGCTGGAGGTATCCTGAGTACCTCGGGGCACGAGCGTCCCCGTGGGAAGCTAGGGGAACCATCCTCTAAGGCTAAGTACTACCTGCTGACCGATAGTGAACGAGTACCGTGAGGGAAAGGTGAAAAGCACCCCGAGAGGGGAGTGAAATAGTACCTGAAACCGCGTGCCTACAAACAGTCGGAGCTCGAAAGAGTGACGGCGTACCTTTTGCATAATGAGCCAGCGAGTTGCGCGTCGTGGCGAGGCTAAGCCGAGAGGTGGAGCCGTATGGAAACCGAGTCTGAACAGGGCGAAAGTCACGGCATGCAGACCCGAAGCCAGGCGATCTACCCATGGCCAGGGTGAAGCGCGGGTAACACTGCGTGGAGGCCCGAACTCACCGAGGTTGAAAACTCGGGGGATGAGCTGTGGGTANGAGTGAAAGGCTAA] [+] EMBL CD088859 [GGGTTGTAGGACCTCCACAAAAGTACAACGGAAGCTAGTGGAAGCACCTGGGAAGGTGCGGCACAGAGGGTGAGACCCCCGTACACGAAAGCGGAAGTTGGCTGGAGGTATCCTGAGTACCTCGGGGCACGAGCGTCCCCGTGGGAAGCTAGGGGAACCATCCTCTAAGGCTAAGTACTACCTGCTGACCGATAGTGAACGAGTACCGTGAGGGAAAGGTGAAAAGCACCCCGAGAGGGGAGTGAAATAGTACCTGAAACCGCGTGCCTACAAACAGTCGGAGCTCGAAAGAGTGACGGCGTACCTTTTGCATAATGAGCCAGCGAGTTGCGCGTCGTGGCGAGGCTAAGCCGAGAGGTGGAGCCGTATGGAAACCGAGTCTGAACAGGGCGAAAGTCACGGCATGCAGACCCGAAGCCAGGCGATCTACCCATGGCCAGGGTGAAGCGCGGGTAACACTGCGTGGAGGCCCGAACTCACCGAGGTTGAAAACTCGGGGGATGAGCTGTGGGTANGAGTGAAAGGCTAA] consensusID : consensus_4557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 398 fasta sequence [TCCAGTTTGCTCTGCTGATTGTCAAATTCCATATTAGCAGGCATATTATTATTATTATTACTATCATTATTATTATTAGCATTATACATACAATAACTGAGGTACTCAGTATTGTCAGTCATTGAAACGCTTTGATTTATAATTCCACTAGGTACTTCAAATGCAGATGACAATGAGGTAGGAGACGAAGCAACAAACTGATGTTTATCAGTGAGATTCGAATGAATTGTCAAGTCATGTAAAACAACACCTTGACCATTTTCACTATAAGGAACGAAATGGTTATCATCATTATTATTAGGCAGAGACTGAAGTGGTGAAGGATGATAAGAATACGCAGTAGAATTATTAAAATAGTCAGTAAGTGATATAACTGCATTATCATTATTCTGTGGTAC] [+] EMBL CD149385 [TCCAGTTTGCTCTGCTGATTGTCAAATTCCATATTAGCAGGCATATTATTATTATTATTACTATCATTATTATTATTAGCATTATACATACAATAACTGAGGTACTCAGTATTGTCAGTCATTGAAACGCTTTGATTTATAATTCCACTAGGTACTTCAAATGCAGATGACAATGAGGTAGGAGACGAAGCAACAAACTGATGTTTATCAGTGAGATTCGAATGAATTGTCAAGTCATGTAAAACAACACCTTGACCATTTTCACTATAAGGAACGAAATGGTTATCATCATTATTATTAGGCAGAGACTGAAGTGGTGAAGGATGATAAGAATACGCAGTAGAATTATTAAAATAGTCAGTAAGTGATATAACTGCATTATCATTATTCTGTGGTAC] [+] EMBL CD149279 [TCCAGTTTGCTCTGCTGATTGTCAAATTCCATATTAGCAGGCATATTATTATTATTATTACTATCATTATTATTATTAGCATTATACATACAATAACTGAGGTACTCAGTATTGTCAGTCATTGAAACGCTTTGATTTATAATTCCACTAGGTACTTCAAATGCAGATGACAATGAGGTAGGAGACGAAGCAACAAACTGATGTTTATCAGTGAGATTCGAATGAATTGTCAAGTCATGTAAAACAACACCTTGACCATTCTCACTATAAGGACCGAAATGGTTATCATCATTATTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4557#0 GGGTTGTAGGACCTCCACAAAAGTACAACGGAAGCTAGTGGAAGCACCTGGGAAGGTGCG 60 consensus_4557#1 -------------------------------------------------TCCAGTTTGCT 11 * *** consensus_4557#0 GCACAGAGGGTGAGACCCCCGTACACGAAAGCGGAAGTTGGCTGGAGGTATCCTGAGTAC 120 consensus_4557#1 CTGCTGATTGTCAAATTCC-ATATTAGCAGGCATATTATTATTATTATTACTATCATTAT 70 * ** ** * * ** ** * * ** * * * ** * * ** consensus_4557#0 CTCGGGGCACGAGCGTCCCCGTGGGAAGCTAGGGGAACCATCCTCTAAGGCTAAGTACTA 180 consensus_4557#1 TATTAT-TAGCATTATACATACAATAACTGAGGTACTCAGTATTGTCAGTC--ATTGAAA 127 * * * * ** *** * * * * ** * * * * consensus_4557#0 CCTGCTGACCGATAGTG--AACGAGTACCGTGAGGGAAAGGTGAAAAGCACCCCGAGAGG 238 consensus_4557#1 CGCTTTGATTTATAATTCCACTAGGTACTTCAAATGCAGATGACAATGAGGTAGGAGACG 187 * *** *** * * **** * * * ** * **** * consensus_4557#0 GG--AGTGAAATAGTACCTGAAACCGCG-TGCCTACAAACAGTCGGAGCTCGAAAGAGTG 295 consensus_4557#1 AAGCAACAAACTGATGTTTATCAGTGAGATTCGAATGAATTGTCAAGTCATGTAAAA-CA 246 * ** * * * * * * * * * ** *** * * ** * consensus_4557#0 ACGGCGT-ACCTTTTGCATAATGAGCCAGCGAGTTGCGCGTCGTGGCGAGGCTAAGCCGA 354 consensus_4557#1 ACACCTTGACCATTTTCACTATAAGG-AACGAAATGGTTATCATCATTATTATTAGGCAG 305 ** * * *** *** ** ** ** * *** ** ** * * * ** * consensus_4557#0 GAGGTGGAGCCGT-ATGGAAACCGAGTCTGAACAGGGCGAAAGTCACGGCATGCAGACCC 413 consensus_4557#1 AGACTGAAGTGGTGAAGGATGATAAGAATACGCAGTAGAATTATTAAAATAGTCAGT--- 362 ** ** ** * *** ** * *** * * * * *** consensus_4557#0 GAAGCCAGGCGATCTACCCATGGCCAGGGTGAAGCGCGGGTAACACTGCGTGGAGGCCCG 473 consensus_4557#1 -AAGTGATATAACTGCATTATCATTATTCTGTGGTAC----------------------- 398 *** * * ** * ** * * consensus_4557#0 AACTCACCGAGGTTGAAAACTCGGGGGATGAGCTGTGGGTANGAGTGAAAGGCTAA 529 consensus_4557#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||