These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4559#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence [TGTTATATTTTAACAGATGCATTAAAACGTTTTGAAGAACGTCTCACATTAATAAAACAGTATCCTAAAATCCCTACTTCTTTGCCAAATAATACAATCAATATCATCAAAATATCAATAACTAATGGATGTGACGAGTCAAGTGACGAATTATGGCCTTCTGAATCAATGAATGAGACATATTCCCTTATTATTTTCAATCAGAGAATAATCTTAAAA] [+] EMBL CD131928 [TGTTATATTTTAACAGATGCATTAAAACGTTTTGAAGAACGTCTCACATTAATAAAACAGTATCCTAAAATCCCTACTTCTTTGCCAAATAATACAATCAATATCATCAAAATATCAATAACTAATGGATGTGACGAGTCAAGTGACGAATTATGGCCTTCTGAATCAATGAATGAGACATATTCCCTTATTATTTTCAATCAGAGAATAATCTTAAAA] consensusID : consensus_4559#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence [GGCTCTAAACTGGTAATAATCATTTCGCTACATCGTAGTCTCNCAGTCTCATAATTTTAACAGATGCATCTGNAAAACGTATCTCTGGAATGAACGTCTCACGATTAATCAAGACAGTATCCTAAAATCCCTACTTCTTTGCCAAATAATACAATCAATATCATCAAAATATCAATAACTAATGGATGTGACGAG] [-] EMBL SMAA69320 [GGCTCTAAACTGGTAATAATCATTTCGCTACATCGTAGTCTCNCAGTCTCATAATTTTAACAGATGCATCTGNAAAACGTATCTCTGGAATGAACGTCTCACGATTAATCAAGACAGTATCCTAAAATCCCTACTTCTTTGCCAAATAATACAATCAATATCATCAAAATATCAATAACTAATGGATGTGACGAG] consensusID : consensus_4559#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 81 fasta sequence [CTCGTCACATCCATTAGTTATTGATATTTTCAATGATATTGATTGTATTATTTGTCAAGAGTAGATTTAGAACATTATATT] [+] EMBL SMAA69301 [CTCGTCACATCCATTAGTTATTGATATTTTCAATGATATTGATTGTATTATTTGTCAAGAGTAGATTTAGAACATTATATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4559#0 ----------------------------------------------TGTTATA-TTTTAA 13 consensus_4559#1 GGCTCTAAACTGGTAATAATCATTTCGCTACATCGTAGTCTCNCAGTCTCATAATTTTAA 60 consensus_4559#2 -------------------------------------------------------CTCGT 5 * consensus_4559#0 CAGATGCAT---TAAAACGT---TTTGAA--GAACGTCT-CAC-ATTAAT-AAAACAGTA 62 consensus_4559#1 CAGATGCATCTGNAAAACGTATCTCTGGAATGAACGTCT-CACGATTAATCAAGACAGTA 119 consensus_4559#2 CACATCCATTAGTTATTGATATTTTCAATGATATTGATTGTATTATTTGTCAAGAGTAGA 65 ** ** *** * * * * * * * *** * ** * * consensus_4559#0 TCCTAAAATCCCTACTTCTTTGCCAAATAATACAATCAATATCATCAAAATATCAATAAC 122 consensus_4559#1 TCCTAAAATCCCTACTTCTTTGCCAAATAATACAATCAATATCATCAAAATATCAATAAC 179 consensus_4559#2 TTTAGAACATTATATT-------------------------------------------- 81 * ** ** * consensus_4559#0 TAATGGATGTGACGAGTCAAGTGACGAATTATGGCCTTCTGAATCAATGAATGAGACATA 182 consensus_4559#1 TAATGGATGTGACGAG-------------------------------------------- 195 consensus_4559#2 ------------------------------------------------------------ consensus_4559#0 TTCCCTTATTATTTTCAATCAGAGAATAATCTTAAAA 219 consensus_4559#1 ------------------------------------- consensus_4559#2 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||