These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 740 fasta sequence [ATTATGACAATGTCTTTATTTGAAAATAAGGAAAATACTCGAAATGATTCAGCAGTTAAACATATATCAAACTATATTGTCAAAAGATACTTTATTATTTGAAGTGGACATTTCTTCAGCTACTTCCGGGACAGTAGTTAATTCAACAGAAACAACTATCTTTTGATTTCCATTCGGATACTTATTGGAACATGATGATTCTACTCCTCGATTATTCAATGAATTTATATCTAAACTTTCTATACTTGAATTCATTGATACTTGTGTTTCATGTTTTGGCAAAGGTGATGATTCTTGTTCTCTATGTATCGCATATAAAACAACCGATGATCCACGTGGTCTTGGTTGTATTGAAAATCGATATCTAGGTAATGCAGATAAACGATTGGCTTCAGCTAATGCCATCTGTTGTTGATGATGTTGATAACTACGATAATTACCTAAATGATGTCGAATCGCTAATATCATCCATATAGNCAATAATAGAACTAAAAGCACGGCTAATCCCCATAAACCAAACACTTGCCATGAATAAGGATTCAATTCAGCATAACCAAATACACCAATCACACAAAAATATACACCAATATAAGTAGCTGGTGTAAGTAATATCATACATATAATATCAGCTATTAAATGTCTTCGTGTTCTCTCCCATCTTAACCAATCACGAAAACTTCTTATTTCATTGCTGAAACGTCTAATCTGATTCAGAGTGGAGAATTGGGATGAATGTCGTT] [+] EMBL AI975680 [ATTATGACAATGTCTTTATTTGAAAATAAGGAAAATACTCGAAATGATTCAGCAGTTAAACATATATCAAACTATATTGTCAAAAGATACTTTATTATTTGAAGTGGACATTTCTTCAGCTACTTCCGGGACAGTAGTTAATTCAACAGAAACAACTATCTTTTGATTTCCATTCGGATACTTATTGGAACATGATGATTCTACTCCTCGATTATTCAATGAATTTATATCTAAACTTTCTATACTTGAATTCATTGATACTTGTGTTTCATGTTTTGGCAAAGGTGATGATTCTTGTTCTCTATGTATCGCATATAAAACAACCGATGATCCACGTGGTCTTGGTTGTATTGAAAATCGATATCTAGGTAATGCAGATAAACGATTGGCTTCAGCTAATGCCATCTGTTGTTGATGATGTTGATAACTACGATAATTACCTAAATGATGTCGAATCGCTAATATCATCCATATAGNCAATAATAG ] [-] EMBL CD169453 [ ATTGAAAATCGATATCTAGGTAATGCAGATAAACGATTGGCTTCAGCTAATGCCATCTGTTGTTGATGATGTTGATAACTACGATAATTACCTAAATGATGTCGAATCGCTAATATCATCCATATAGTCAATAATAGAACTAAAAGCACGGCTAATCCCCATAAACCAAACACTTGCCATGAATAAGGATTCAATTCAGCATAACCAAATACACCAATCACACAAAAATATACACCAATATAAGTAGCTGGTGTAAGTAATATCATACATATAATATCAGCTATTAAATGTCTTCGTGTTCTCTCCCATCTTAACCAATCACGAAAACTTCTTATTTCATTGCTGAAACGTCTAATCTGATTCAGAGTGGAGAATTGGGATGAATGTCGTT] consensusID : consensus_4560#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 148 fasta sequence [TCTAGAGGATCCCAACTACGATAATTACCAAATGATGTCGAATCGCTAATATCATCCATATAGTCAATAATAGAACTAAAAGCACGGCTAATCCCCATAAACCAAACACTTGCCATGAATAAGGATTCAATTCAGCATAACCAAATGC] [+] EMBL CD068135 [TCTAGAGGATCCCAACTACGATAATTACCAAATGATGTCGAATCGCTAATATCATCCATATAGTCAATAATAGAACTAAAAGCACGGCTAATCCCCATAAACCAAACACTTGCCATGAATAAGGATTCAATTCAGCATAACCAAATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4560#0 ATTATGACAATGTCTTTATTTGAAAATAAGGAAAATACTCGAAATGATTCAGCAGTTAAA 60 consensus_4560#1 ------------------------------------------------------------ consensus_4560#0 CATATATCAAACTATATTGTCAAAAGATACTTTATTATTTGAAGTGGACATTTCTTCAGC 120 consensus_4560#1 ------------------------------------------------------------ consensus_4560#0 TACTTCCGGGACAGTAGTTAATTCAACAGAAACAACTATCTTTTGATTTCCATTCGGATA 180 consensus_4560#1 ------------------------------------------------------------ consensus_4560#0 CTTATTGGAACATGATGATTCTACTCCTCGATTATTCAATGAATTTATATCTAAACTTTC 240 consensus_4560#1 ------------------------------------------------------------ consensus_4560#0 TATACTTGAATTCATTGATACTTGTGTTTCATGTTTTGGCAAAGGTGATGATTCTTGTTC 300 consensus_4560#1 ------------------------------------------------------------ consensus_4560#0 TCTATGTATCGCATATAAAACAACCGATGATCCACGTGGTCTTGGTTGTATTGAAAATCG 360 consensus_4560#1 ------------------------------------------------------------ consensus_4560#0 ATATCTAGGTAATGCAGATAAACGATTGGCTTCAGCTAATGCCATCTGTTGTTGATGATG 420 consensus_4560#1 ----------------------------------------------------TCTAGAGG 8 * ** * consensus_4560#0 TTGATAACTACGATAATTACCTAAATGATGTCGAATCGCTAATATCATCCATATAGNCAA 480 consensus_4560#1 ATCCCAACTACGATAATTACC-AAATGATGTCGAATCGCTAATATCATCCATATAGTCAA 67 * **************** ********************************** *** consensus_4560#0 TAATAGAACTAAAAGCACGGCTAATCCCCATAAACCAAACACTTGCCATGAATAAGGATT 540 consensus_4560#1 TAATAGAACTAAAAGCACGGCTAATCCCCATAAACCAAACACTTGCCATGAATAAGGATT 127 ************************************************************ consensus_4560#0 CAATTCAGCATAACCAAATACACCAATCACACAAAAATATACACCAATATAAGTAGCTGG 600 consensus_4560#1 CAATTCAGCATAACCAAATGC--------------------------------------- 148 ******************* * consensus_4560#0 TGTAAGTAATATCATACATATAATATCAGCTATTAAATGTCTTCGTGTTCTCTCCCATCT 660 consensus_4560#1 ------------------------------------------------------------ consensus_4560#0 TAACCAATCACGAAAACTTCTTATTTCATTGCTGAAACGTCTAATCTGATTCAGAGTGGA 720 consensus_4560#1 ------------------------------------------------------------ consensus_4560#0 GAATTGGGATGAATGTCGTT 740 consensus_4560#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||