cluster # 4560

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Schistosoma mansoni
cluster # 4560 cluster # 4560 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4560#0 length = 740 sequences # 2

consensus_4560#1 length = 148 sequences # 1

consensusID : consensus_4560#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 740
fasta sequence

                              [ATTATGACAATGTCTTTATTTGAAAATAAGGAAAATACTCGAAATGATTCAGCAGTTAAACATATATCAAACTATATTGTCAAAAGATACTTTATTATTTGAAGTGGACATTTCTTCAGCTACTTCCGGGACAGTAGTTAATTCAACAGAAACAACTATCTTTTGATTTCCATTCGGATACTTATTGGAACATGATGATTCTACTCCTCGATTATTCAATGAATTTATATCTAAACTTTCTATACTTGAATTCATTGATACTTGTGTTTCATGTTTTGGCAAAGGTGATGATTCTTGTTCTCTATGTATCGCATATAAAACAACCGATGATCCACGTGGTCTTGGTTGTATTGAAAATCGATATCTAGGTAATGCAGATAAACGATTGGCTTCAGCTAATGCCATCTGTTGTTGATGATGTTGATAACTACGATAATTACCTAAATGATGTCGAATCGCTAATATCATCCATATAGNCAATAATAGAACTAAAAGCACGGCTAATCCCCATAAACCAAACACTTGCCATGAATAAGGATTCAATTCAGCATAACCAAATACACCAATCACACAAAAATATACACCAATATAAGTAGCTGGTGTAAGTAATATCATACATATAATATCAGCTATTAAATGTCTTCGTGTTCTCTCCCATCTTAACCAATCACGAAAACTTCTTATTTCATTGCTGAAACGTCTAATCTGATTCAGAGTGGAGAATTGGGATGAATGTCGTT]

[+] EMBL AI975680             [ATTATGACAATGTCTTTATTTGAAAATAAGGAAAATACTCGAAATGATTCAGCAGTTAAACATATATCAAACTATATTGTCAAAAGATACTTTATTATTTGAAGTGGACATTTCTTCAGCTACTTCCGGGACAGTAGTTAATTCAACAGAAACAACTATCTTTTGATTTCCATTCGGATACTTATTGGAACATGATGATTCTACTCCTCGATTATTCAATGAATTTATATCTAAACTTTCTATACTTGAATTCATTGATACTTGTGTTTCATGTTTTGGCAAAGGTGATGATTCTTGTTCTCTATGTATCGCATATAAAACAACCGATGATCCACGTGGTCTTGGTTGTATTGAAAATCGATATCTAGGTAATGCAGATAAACGATTGGCTTCAGCTAATGCCATCTGTTGTTGATGATGTTGATAACTACGATAATTACCTAAATGATGTCGAATCGCTAATATCATCCATATAGNCAATAATAG                                                                                                                                                                                                                                                              ]
[-] EMBL CD169453             [                                                                                                                                                                                                                                                                                                                                                             ATTGAAAATCGATATCTAGGTAATGCAGATAAACGATTGGCTTCAGCTAATGCCATCTGTTGTTGATGATGTTGATAACTACGATAATTACCTAAATGATGTCGAATCGCTAATATCATCCATATAGTCAATAATAGAACTAAAAGCACGGCTAATCCCCATAAACCAAACACTTGCCATGAATAAGGATTCAATTCAGCATAACCAAATACACCAATCACACAAAAATATACACCAATATAAGTAGCTGGTGTAAGTAATATCATACATATAATATCAGCTATTAAATGTCTTCGTGTTCTCTCCCATCTTAACCAATCACGAAAACTTCTTATTTCATTGCTGAAACGTCTAATCTGATTCAGAGTGGAGAATTGGGATGAATGTCGTT]




>consensus_4560#0
ATTATGACAATGTCTTTATTTGAAAATAAGGAAAATACTCGAAATGATTCAGCAGTTAAA
CATATATCAAACTATATTGTCAAAAGATACTTTATTATTTGAAGTGGACATTTCTTCAGC
TACTTCCGGGACAGTAGTTAATTCAACAGAAACAACTATCTTTTGATTTCCATTCGGATA
CTTATTGGAACATGATGATTCTACTCCTCGATTATTCAATGAATTTATATCTAAACTTTC
TATACTTGAATTCATTGATACTTGTGTTTCATGTTTTGGCAAAGGTGATGATTCTTGTTC
TCTATGTATCGCATATAAAACAACCGATGATCCACGTGGTCTTGGTTGTATTGAAAATCG
ATATCTAGGTAATGCAGATAAACGATTGGCTTCAGCTAATGCCATCTGTTGTTGATGATG
TTGATAACTACGATAATTACCTAAATGATGTCGAATCGCTAATATCATCCATATAGNCAA
TAATAGAACTAAAAGCACGGCTAATCCCCATAAACCAAACACTTGCCATGAATAAGGATT
CAATTCAGCATAACCAAATACACCAATCACACAAAAATATACACCAATATAAGTAGCTGG
TGTAAGTAATATCATACATATAATATCAGCTATTAAATGTCTTCGTGTTCTCTCCCATCT
TAACCAATCACGAAAACTTCTTATTTCATTGCTGAAACGTCTAATCTGATTCAGAGTGGA
GAATTGGGATGAATGTCGTT

consensusID : consensus_4560#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 148
fasta sequence

                              [TCTAGAGGATCCCAACTACGATAATTACCAAATGATGTCGAATCGCTAATATCATCCATATAGTCAATAATAGAACTAAAAGCACGGCTAATCCCCATAAACCAAACACTTGCCATGAATAAGGATTCAATTCAGCATAACCAAATGC]

[+] EMBL CD068135             [TCTAGAGGATCCCAACTACGATAATTACCAAATGATGTCGAATCGCTAATATCATCCATATAGTCAATAATAGAACTAAAAGCACGGCTAATCCCCATAAACCAAACACTTGCCATGAATAAGGATTCAATTCAGCATAACCAAATGC]




>consensus_4560#1
TCTAGAGGATCCCAACTACGATAATTACCAAATGATGTCGAATCGCTAATATCATCCATA
TAGTCAATAATAGAACTAAAAGCACGGCTAATCCCCATAAACCAAACACTTGCCATGAAT
AAGGATTCAATTCAGCATAACCAAATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4560#0      ATTATGACAATGTCTTTATTTGAAAATAAGGAAAATACTCGAAATGATTCAGCAGTTAAA 60
consensus_4560#1      ------------------------------------------------------------
                                                                                  

consensus_4560#0      CATATATCAAACTATATTGTCAAAAGATACTTTATTATTTGAAGTGGACATTTCTTCAGC 120
consensus_4560#1      ------------------------------------------------------------
                                                                                  

consensus_4560#0      TACTTCCGGGACAGTAGTTAATTCAACAGAAACAACTATCTTTTGATTTCCATTCGGATA 180
consensus_4560#1      ------------------------------------------------------------
                                                                                  

consensus_4560#0      CTTATTGGAACATGATGATTCTACTCCTCGATTATTCAATGAATTTATATCTAAACTTTC 240
consensus_4560#1      ------------------------------------------------------------
                                                                                  

consensus_4560#0      TATACTTGAATTCATTGATACTTGTGTTTCATGTTTTGGCAAAGGTGATGATTCTTGTTC 300
consensus_4560#1      ------------------------------------------------------------
                                                                                  

consensus_4560#0      TCTATGTATCGCATATAAAACAACCGATGATCCACGTGGTCTTGGTTGTATTGAAAATCG 360
consensus_4560#1      ------------------------------------------------------------
                                                                                  

consensus_4560#0      ATATCTAGGTAATGCAGATAAACGATTGGCTTCAGCTAATGCCATCTGTTGTTGATGATG 420
consensus_4560#1      ----------------------------------------------------TCTAGAGG 8
                                                                          *   ** *

consensus_4560#0      TTGATAACTACGATAATTACCTAAATGATGTCGAATCGCTAATATCATCCATATAGNCAA 480
consensus_4560#1      ATCCCAACTACGATAATTACC-AAATGATGTCGAATCGCTAATATCATCCATATAGTCAA 67
                       *   **************** ********************************** ***

consensus_4560#0      TAATAGAACTAAAAGCACGGCTAATCCCCATAAACCAAACACTTGCCATGAATAAGGATT 540
consensus_4560#1      TAATAGAACTAAAAGCACGGCTAATCCCCATAAACCAAACACTTGCCATGAATAAGGATT 127
                      ************************************************************

consensus_4560#0      CAATTCAGCATAACCAAATACACCAATCACACAAAAATATACACCAATATAAGTAGCTGG 600
consensus_4560#1      CAATTCAGCATAACCAAATGC--------------------------------------- 148
                      ******************* *                                       

consensus_4560#0      TGTAAGTAATATCATACATATAATATCAGCTATTAAATGTCTTCGTGTTCTCTCCCATCT 660
consensus_4560#1      ------------------------------------------------------------
                                                                                  

consensus_4560#0      TAACCAATCACGAAAACTTCTTATTTCATTGCTGAAACGTCTAATCTGATTCAGAGTGGA 720
consensus_4560#1      ------------------------------------------------------------
                                                                                  

consensus_4560#0      GAATTGGGATGAATGTCGTT 740
consensus_4560#1      --------------------