cluster # 4566

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Schistosoma mansoni
cluster # 4566 cluster # 4566 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4566#0 length = 560 sequences # 1

consensus_4566#1 length = 427 sequences # 1
consensus_4566#2 length = 379 sequences # 1

consensusID : consensus_4566#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence

                              [TGAATAGATAGAGCGATGACTTTTGAAGCGAAAGGTACTGGGTTCGAGTTCCAGAGTGAATATCAACTCTGAGATGCAGGTACATCCAACTGACGAGTTTGACATAGAACGAAACTTGCTTCCTGGATTCCACTGCTAGCCACTATTCATCTTTGCTTATAATGCTTGTGAATTCAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCAATTAGTGACTGACCAGTTGCAGTCCTAACACATCGATGGGGAAGATTCAAACAAACAATACTAAATGAATTAAAATAAATTTTCATTTCTTAATTCAATAATACTTTGACAAAATAAGAATTTTGATTTAAAAATAGAAATATTTAAATAATAGTAGTTCAATGTCCAATTTTACAATCCCAGTTGTTTATAGTACTAATAATCAATAGTATTGTTATTATTATTACTCTTACTATTAACAATGGTACTTCAGAAGTAATAATAATAGCCTTAATCATAAATGCTTACATACATACATACATACATACATACATACATACATACTTACTTACTTACTTACTTAC]

[+] EMBL CD129482             [TGAATAGATAGAGCGATGACTTTTGAAGCGAAAGGTACTGGGTTCGAGTTCCAGAGTGAATATCAACTCTGAGATGCAGGTACATCCAACTGACGAGTTTGACATAGAACGAAACTTGCTTCCTGGATTCCACTGCTAGCCACTATTCATCTTTGCTTATAATGCTTGTGAATTCAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCAATTAGTGACTGACCAGTTGCAGTCCTAACACATCGATGGGGAAGATTCAAACAAACAATACTAAATGAATTAAAATAAATTTTCATTTCTTAATTCAATAATACTTTGACAAAATAAGAATTTTGATTTAAAAATAGAAATATTTAAATAATAGTAGTTCAATGTCCAATTTTACAATCCCAGTTGTTTATAGTACTAATAATCAATAGTATTGTTATTATTATTACTCTTACTATTAACAATGGTACTTCAGAAGTAATAATAATAGCCTTAATCATAAATGCTTACATACATACATACATACATACATACATACATACATACTTACTTACTTACTTACTTAC]




>consensus_4566#0
TGAATAGATAGAGCGATGACTTTTGAAGCGAAAGGTACTGGGTTCGAGTTCCAGAGTGAA
TATCAACTCTGAGATGCAGGTACATCCAACTGACGAGTTTGACATAGAACGAAACTTGCT
TCCTGGATTCCACTGCTAGCCACTATTCATCTTTGCTTATAATGCTTGTGAATTCAGGCT
ATATCGAGGCAATACGCACAGTATGCACATATGCCAATTAGTGACTGACCAGTTGCAGTC
CTAACACATCGATGGGGAAGATTCAAACAAACAATACTAAATGAATTAAAATAAATTTTC
ATTTCTTAATTCAATAATACTTTGACAAAATAAGAATTTTGATTTAAAAATAGAAATATT
TAAATAATAGTAGTTCAATGTCCAATTTTACAATCCCAGTTGTTTATAGTACTAATAATC
AATAGTATTGTTATTATTATTACTCTTACTATTAACAATGGTACTTCAGAAGTAATAATA
ATAGCCTTAATCATAAATGCTTACATACATACATACATACATACATACATACATACATAC
TTACTTACTTACTTACTTAC

consensusID : consensus_4566#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [TTCATCCTTCCTATACTATATCCTTACACACAACCTATCTTTTATATCTTACCACCACTAAATTAACTACTTCTACGAATCTGGTGTCGATCTTGTTGTGCTAACGAGTTATGGCAACTTGGACCTATGCATAAATGTGCTTGGTCCTACGTTGTAGCTGACTGACCCTGTTTTACTATTCGATAAGAATTAGTCTGTGTTTCTGTTGATGGGCAGACCACGCTCTTTCATGAGGGATAACAGGTGTAAGTCTGTTTTAACTTATAATCAAACTATGTCATTATGAACGTATCGAATAGTTTTTTCATAGTTGAAATCATGAGTCAATTGAAGCTAGACCACCATGGAAAACCTGGACAGCCGGAATTCAATAGTGACTAACTTCGAGAGGTAACTCTTGGAGTTCTAGAGAAACGTGATGATCAGT]

[+] EMBL CD090074             [TTCATCCTTCCTATACTATATCCTTACACACAACCTATCTTTTATATCTTACCACCACTAAATTAACTACTTCTACGAATCTGGTGTCGATCTTGTTGTGCTAACGAGTTATGGCAACTTGGACCTATGCATAAATGTGCTTGGTCCTACGTTGTAGCTGACTGACCCTGTTTTACTATTCGATAAGAATTAGTCTGTGTTTCTGTTGATGGGCAGACCACGCTCTTTCATGAGGGATAACAGGTGTAAGTCTGTTTTAACTTATAATCAAACTATGTCATTATGAACGTATCGAATAGTTTTTTCATAGTTGAAATCATGAGTCAATTGAAGCTAGACCACCATGGAAAACCTGGACAGCCGGAATTCAATAGTGACTAACTTCGAGAGGTAACTCTTGGAGTTCTAGAGAAACGTGATGATCAGT]




>consensus_4566#1
TTCATCCTTCCTATACTATATCCTTACACACAACCTATCTTTTATATCTTACCACCACTA
AATTAACTACTTCTACGAATCTGGTGTCGATCTTGTTGTGCTAACGAGTTATGGCAACTT
GGACCTATGCATAAATGTGCTTGGTCCTACGTTGTAGCTGACTGACCCTGTTTTACTATT
CGATAAGAATTAGTCTGTGTTTCTGTTGATGGGCAGACCACGCTCTTTCATGAGGGATAA
CAGGTGTAAGTCTGTTTTAACTTATAATCAAACTATGTCATTATGAACGTATCGAATAGT
TTTTTCATAGTTGAAATCATGAGTCAATTGAAGCTAGACCACCATGGAAAACCTGGACAG
CCGGAATTCAATAGTGACTAACTTCGAGAGGTAACTCTTGGAGTTCTAGAGAAACGTGAT
GATCAGT

consensusID : consensus_4566#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [GCAACTTAAAATTAAAGACCAAACTGAAACTCGATCGATGCAATTCAATACGCATTAAAGACGAAAAAACATGAAAGTTATTCTTCCGAAGTGGTTGTATTGTAACAGAGTAAATTTTTTGATAGAACGGCGTTTTAAAACTCATGTGGCTCACACTTTGAAGTCATTTTATTTTTGACCGCTTCTTATCGATATCCCATACTTCCTCAATAATAATACTTCGTTTATCAATTTAACGAACAAGTATTTATACACGAAGAAGATCTTCATATGTAAGGTGGTTGGATGCATTCATCATATGTTTTTCTTCCTGTACTATATCCTTATATACAACCTTCCTTTTATATATTACCACCACTAAATTAACTACTTCTATGAA]

[+] EMBL CD197071             [GCAACTTAAAATTAAAGACCAAACTGAAACTCGATCGATGCAATTCAATACGCATTAAAGACGAAAAAACATGAAAGTTATTCTTCCGAAGTGGTTGTATTGTAACAGAGTAAATTTTTTGATAGAACGGCGTTTTAAAACTCATGTGGCTCACACTTTGAAGTCATTTTATTTTTGACCGCTTCTTATCGATATCCCATACTTCCTCAATAATAATACTTCGTTTATCAATTTAACGAACAAGTATTTATACACGAAGAAGATCTTCATATGTAAGGTGGTTGGATGCATTCATCATATGTTTTTCTTCCTGTACTATATCCTTATATACAACCTTCCTTTTATATATTACCACCACTAAATTAACTACTTCTATGAA]




>consensus_4566#2
GCAACTTAAAATTAAAGACCAAACTGAAACTCGATCGATGCAATTCAATACGCATTAAAG
ACGAAAAAACATGAAAGTTATTCTTCCGAAGTGGTTGTATTGTAACAGAGTAAATTTTTT
GATAGAACGGCGTTTTAAAACTCATGTGGCTCACACTTTGAAGTCATTTTATTTTTGACC
GCTTCTTATCGATATCCCATACTTCCTCAATAATAATACTTCGTTTATCAATTTAACGAA
CAAGTATTTATACACGAAGAAGATCTTCATATGTAAGGTGGTTGGATGCATTCATCATAT
GTTTTTCTTCCTGTACTATATCCTTATATACAACCTTCCTTTTATATATTACCACCACTA
AATTAACTACTTCTATGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4566#1      ------------------------------------------------------------
consensus_4566#2      ------------------------------------------------------------
consensus_4566#0      TGAATAGATAGAGCGATGACTTTTGAAGCGAAAGGTACTGGGTTCGAGTTCCAGAGTGAA 60
                                                                                  

consensus_4566#1      ---------------------TTCATCCTTCCTATACTATATCCTTACACACAACCTATC 39
consensus_4566#2      -------------------------GCAACTTAAAATTAAAGACCAAACTGAAACTCGAT 35
consensus_4566#0      TATCAACTCTGAGATGCAGGTACATCCAACTGACGAGTTTGACATAGAACGAAACTTGCT 120
                                                *        * *              ***     

consensus_4566#1      TTTTATATCTTACCACCAC------TAAATTAACTACTTCTACGAATCTGGTGTCG--AT 91
consensus_4566#2      CGATGCAATTCAATAC----------GCATTAAAGACGAAAAAACATG-AAAGTTA--TT 82
consensus_4566#0      TCCTGGATTCCACTGCTAGCCACTATTCATCTTTGCTTATAATGCTTGTGAATTCAGGCT 180
                         *  *    *   *            **           *    *      *     *

consensus_4566#1      CTTGTTGTGCTAA-CGAGTTATG---GCAACTTGGACCTATGCATAAATGTGCT-TGGTC 146
consensus_4566#2      CTTCCGAAGTGGT-TGTATTGTA---ACAGAGTAAATTTTTTGATAGAACGGC----GTT 134
consensus_4566#0      ATATCGAGGCAATACGCACAGTATGCACATATGCCAATTAGTGACTGACCAGTTGCAGTC 240
                       *      *      *     *     **      *  *    *   *   *     ** 

consensus_4566#1      CTACGTTGT--AGCTGACTGACCCTGTTTTACTATTCGATAAGAATTAGTCTGTGTTTCT 204
consensus_4566#2      TTAAAACTC--ATGTGGCTCACACTTTGAAGTCATT---------TTATTTTTGACCGCT 183
consensus_4566#0      CTAACACATCGATGGGGAAGATTCAAACAAACAATACTAAATGAATTAAAATAAATTTTC 300
                       **        *   *    *  *         **          ***   *        

consensus_4566#1      GTTGATGGGCAGACCACGCTCTTTCATGAGGGATAACAGGTGTAAGTCTGTTTTAACTTA 264
consensus_4566#2      TCTTATCGATATCCCATACTTCCTCAATAATAATACTTCGTTTA---TCAATTTAACGAA 240
consensus_4566#0      ATTTCTTA--ATTCAATAATACTTTGACAA-AATAAGAATTTTGATTTAAAAATAG-AAA 356
                        *  *    *  * *   *   *    *   ***     * *          **    *

consensus_4566#1      TAATCAAACTATGTCATTATGAACGTATCGAATAGTTTTTTCATAGTTGAAATCATGAGT 324
consensus_4566#2      CAAGTAT-TTATA-CACGAAGAAGATCTT---CATATGTAAGGTGGTTGGATGCATTCAT 295
consensus_4566#0      TATTTAAATAATAGTAGTTCAATGTCCAATTTTACAATCCCAGTTGTTTATAGTACTAAT 416
                       *   *    **   *     *           *         * ***      *    *

consensus_4566#1      CAATTGAAGCTAGACCACCATGGAAAACCTGGACAG--CCGGAATTCAATAGTGACTAAC 382
consensus_4566#2      CA--TATGTTTTTCTTCCTGTACTATATCCTTATAT--ACAACCTTCCTT--TTATATAT 349
consensus_4566#0      AATCAATAGTATTGTTATTATTATTACTCTTACTATTAACAATGGTACTTCAGAAGTAAT 476
                       *                  *       *     *    *     *   *    *   * 

consensus_4566#1      TTCGAGAGG-TAACTCTTGGAGTTCTAGAGAAACGTGATGATCAGT-------------- 427
consensus_4566#2      TACCACCAC-TAAATTAACTACTTCTATGAA----------------------------- 379
consensus_4566#0      AATAATAGCCTTAATCATAAATGCTTACATACATACATACATACATACATACATACATAC 536
                          *     * * *     *    **   *                             

consensus_4566#1      ------------------------
consensus_4566#2      ------------------------
consensus_4566#0      ATACTTACTTACTTACTTACTTAC 560