cluster # 4569

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Schistosoma mansoni
cluster # 4569 cluster # 4569 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4569#0 length = 892 sequences # 2

consensus_4569#1 length = 295 sequences # 1

consensusID : consensus_4569#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 892
fasta sequence

                              [AGTGTACAAAATTTCTATCAGAAAAATGTGACTAAATTAAATCAGATTCGATTTGAAAGAGATACTGCTAAGTATTAACGACATTGACATTGTGAGTTCAGTTTGAAGAATAAAAACGAATAGAAAATAAAACGGAGACTATTGATTAGTCGGTCGAGTTATTTTTTTAGTCGCTGCCCCAGTCCCAGTCGCATTTGTTTTCTGTACATCCGCTGAAACTGGTTTGTTGGACTTCCCATTATCTACAGTCATTTTTGTATTGGGATCATTTACATTGGAGGAAGTTGTTCCGCATTTTGGAATGAGACGCTCTATCATTTCTTGTGCGTATCTCAATCTGTTTGCTAAGTCCTTACTTAAACCGAATTCCCGTAGATGTTTGAAGCGGTACGTTCTGAATTCCCTGTTGGCATCAATATAAGTTACGGCACGCATTAAAGGACATAGAATGATTTTTGCATGATCATCAAAGAAGTTTATTTGCAACGTTCCATTACTTAAATGAAGTACAATAGCCGAGCGTGTTCTAAACCATCGGCGAAGAAAAGGTAGACGAGTCATGGCATCAGTGTCCGGTCGCGCAATATTCTCACCAGCCTTAAGGAGATTCTGGTGCATATATGCTTTGAAGCATGTGAGAAGTGTCACTTTTTTTGACAGATATTCCGGATGCTTTGACAGAGTGAACAAACGTTCAGTCCCATGTTCGTCGATGTACTGAAGATTCTGTTCATTGGTTGTTAAAAGGAGTCTTGTCACGTCATTGAATACGACACCATATGAGTTATCACACAACTGATACCCCAAACCATATTTATCTGAATAGTCAACCCACTTGCTGACCCAGTATATTGGACAGGCTGCTGGAACTTCACTTTCTTCCATTGCTTTT]

[+] EMBL CD140625             [AGTGTACAAAATTTCTATCAGAAAAATGTGACTAAATTAAATCAGATTCGATTTGAAAGAGATACTGCTAAGTATTAACGACATTGACATTGTGAGTTCAGTTTGAAGAATAAAAACGAATAGAAAATAAAACGGAGACTATTGATTAGTCGGTCGAGTTATTTTTTTAGTCGCTGCCCCAGTCCCAGTCGCATTTGTTTTCTGTACATCCGCTGAAACTGGTTTGTTGGACTTCCCATTATCTACAGTCATTTTTGTATTGGGATCATTTACATTGGAGGAAGTTGTTCCGCATTTTGGAATGAGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD075183             [                                                                                                                                                                                                                                                 tatacgtatATTTTTGTATTGGGATCATTTACATTGGAGGAAGTTGTTCCGCATTTTGGAATGAGACGCTCTATCATTTCTTGTGCGTATCTCAATCTGTTTGCTAAGTCCTTACTTAAACCGAATTCCCGTAGATGTTTGAAGCGGTACGTTCTGAATTCCCTGTTGGCATCAATATAAGTTACGGCACGCATTAAAGGACATAGAATGATTTTTGCATGATCATCAAAGAAGTTTATTTGCAACGTTCCATTACTTAAATGAAGTACAATAGCCGAGCGTGTTCTAAACCATCGGCGAAGAAAAGGTAGACGAGTCATGGCATCAGTGTCCGGTCGCGCAATATTCTCACCAGCCTTAAGGAGATTCTGGTGCATATATGCTTTGAAGCATGTGAGAAGTGTCACTTTTTTTGACAGATATTCCGGATGCTTTGACAGAGTGAACAAACGTTCAGTCCCATGTTCGTCGATGTACTGAAGATTCTGTTCATTGGTTGTTAAAAGGAGTCTTGTCACGTCATTGAATACGACACCATATGAGTTATCACACAACTGATACCCCAAACCATATTTATCTGAATAGTCAACCCACTTGCTGACCCAGTATATTGGACAGGCTGCTGGAACTTCACTTTCTTCCATTGCTTTT]




>consensus_4569#0
AGTGTACAAAATTTCTATCAGAAAAATGTGACTAAATTAAATCAGATTCGATTTGAAAGA
GATACTGCTAAGTATTAACGACATTGACATTGTGAGTTCAGTTTGAAGAATAAAAACGAA
TAGAAAATAAAACGGAGACTATTGATTAGTCGGTCGAGTTATTTTTTTAGTCGCTGCCCC
AGTCCCAGTCGCATTTGTTTTCTGTACATCCGCTGAAACTGGTTTGTTGGACTTCCCATT
ATCTACAGTCATTTTTGTATTGGGATCATTTACATTGGAGGAAGTTGTTCCGCATTTTGG
AATGAGACGCTCTATCATTTCTTGTGCGTATCTCAATCTGTTTGCTAAGTCCTTACTTAA
ACCGAATTCCCGTAGATGTTTGAAGCGGTACGTTCTGAATTCCCTGTTGGCATCAATATA
AGTTACGGCACGCATTAAAGGACATAGAATGATTTTTGCATGATCATCAAAGAAGTTTAT
TTGCAACGTTCCATTACTTAAATGAAGTACAATAGCCGAGCGTGTTCTAAACCATCGGCG
AAGAAAAGGTAGACGAGTCATGGCATCAGTGTCCGGTCGCGCAATATTCTCACCAGCCTT
AAGGAGATTCTGGTGCATATATGCTTTGAAGCATGTGAGAAGTGTCACTTTTTTTGACAG
ATATTCCGGATGCTTTGACAGAGTGAACAAACGTTCAGTCCCATGTTCGTCGATGTACTG
AAGATTCTGTTCATTGGTTGTTAAAAGGAGTCTTGTCACGTCATTGAATACGACACCATA
TGAGTTATCACACAACTGATACCCCAAACCATATTTATCTGAATAGTCAACCCACTTGCT
GACCCAGTATATTGGACAGGCTGCTGGAACTTCACTTTCTTCCATTGCTTTT

consensusID : consensus_4569#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence

                              [CGGCGAAGAAAAGGTAGACGAGTCATGGCATCAGTGTCCGGTCGCGCAATATTCTCACCAGCCTTAAGGAGATTCTGGTGCATATATGCTTTGAAGCATGTGAGAAGTGTCACTTTTTTTGACAGATATTCCGGATGCTTTGACAGAGTGAACAAACGTTCAGTCCCATGTTCGTCGATGTACTGAAGATTCTGTTCATTGGTTGTTAAAAGGAGTCTTGTCACGTCATTGAATACGACACCATATGAGTTATCACACAACTGATACCCCCTCGTGCCGAATTCCTGGCCGCTGA]

[-] EMBL CD077767             [CGGCGAAGAAAAGGTAGACGAGTCATGGCATCAGTGTCCGGTCGCGCAATATTCTCACCAGCCTTAAGGAGATTCTGGTGCATATATGCTTTGAAGCATGTGAGAAGTGTCACTTTTTTTGACAGATATTCCGGATGCTTTGACAGAGTGAACAAACGTTCAGTCCCATGTTCGTCGATGTACTGAAGATTCTGTTCATTGGTTGTTAAAAGGAGTCTTGTCACGTCATTGAATACGACACCATATGAGTTATCACACAACTGATACCCCCTCGTGCCGAATTCCTGGCCGCTGA]




>consensus_4569#1
CGGCGAAGAAAAGGTAGACGAGTCATGGCATCAGTGTCCGGTCGCGCAATATTCTCACCA
GCCTTAAGGAGATTCTGGTGCATATATGCTTTGAAGCATGTGAGAAGTGTCACTTTTTTT
GACAGATATTCCGGATGCTTTGACAGAGTGAACAAACGTTCAGTCCCATGTTCGTCGATG
TACTGAAGATTCTGTTCATTGGTTGTTAAAAGGAGTCTTGTCACGTCATTGAATACGACA
CCATATGAGTTATCACACAACTGATACCCCCTCGTGCCGAATTCCTGGCCGCTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4569#0      AGTGTACAAAATTTCTATCAGAAAAATGTGACTAAATTAAATCAGATTCGATTTGAAAGA 60
consensus_4569#1      ------------------------------------------------------------
                                                                                  

consensus_4569#0      GATACTGCTAAGTATTAACGACATTGACATTGTGAGTTCAGTTTGAAGAATAAAAACGAA 120
consensus_4569#1      ------------------------------------------------------------
                                                                                  

consensus_4569#0      TAGAAAATAAAACGGAGACTATTGATTAGTCGGTCGAGTTATTTTTTTAGTCGCTGCCCC 180
consensus_4569#1      ------------------------------------------------------------
                                                                                  

consensus_4569#0      AGTCCCAGTCGCATTTGTTTTCTGTACATCCGCTGAAACTGGTTTGTTGGACTTCCCATT 240
consensus_4569#1      ------------------------------------------------------------
                                                                                  

consensus_4569#0      ATCTACAGTCATTTTTGTATTGGGATCATTTACATTGGAGGAAGTTGTTCCGCATTTTGG 300
consensus_4569#1      ------------------------------------------------------------
                                                                                  

consensus_4569#0      AATGAGACGCTCTATCATTTCTTGTGCGTATCTCAATCTGTTTGCTAAGTCCTTACTTAA 360
consensus_4569#1      ------------------------------------------------------------
                                                                                  

consensus_4569#0      ACCGAATTCCCGTAGATGTTTGAAGCGGTACGTTCTGAATTCCCTGTTGGCATCAATATA 420
consensus_4569#1      ------------------------------------------------------------
                                                                                  

consensus_4569#0      AGTTACGGCACGCATTAAAGGACATAGAATGATTTTTGCATGATCATCAAAGAAGTTTAT 480
consensus_4569#1      ------------------------------------------------------------
                                                                                  

consensus_4569#0      TTGCAACGTTCCATTACTTAAATGAAGTACAATAGCCGAGCGTGTTCTAAACCATCGGCG 540
consensus_4569#1      -------------------------------------------------------CGGCG 5
                                                                             *****

consensus_4569#0      AAGAAAAGGTAGACGAGTCATGGCATCAGTGTCCGGTCGCGCAATATTCTCACCAGCCTT 600
consensus_4569#1      AAGAAAAGGTAGACGAGTCATGGCATCAGTGTCCGGTCGCGCAATATTCTCACCAGCCTT 65
                      ************************************************************

consensus_4569#0      AAGGAGATTCTGGTGCATATATGCTTTGAAGCATGTGAGAAGTGTCACTTTTTTTGACAG 660
consensus_4569#1      AAGGAGATTCTGGTGCATATATGCTTTGAAGCATGTGAGAAGTGTCACTTTTTTTGACAG 125
                      ************************************************************

consensus_4569#0      ATATTCCGGATGCTTTGACAGAGTGAACAAACGTTCAGTCCCATGTTCGTCGATGTACTG 720
consensus_4569#1      ATATTCCGGATGCTTTGACAGAGTGAACAAACGTTCAGTCCCATGTTCGTCGATGTACTG 185
                      ************************************************************

consensus_4569#0      AAGATTCTGTTCATTGGTTGTTAAAAGGAGTCTTGTCACGTCATTGAATACGACACCATA 780
consensus_4569#1      AAGATTCTGTTCATTGGTTGTTAAAAGGAGTCTTGTCACGTCATTGAATACGACACCATA 245
                      ************************************************************

consensus_4569#0      TGAGTTATCACACAACTGATACCCCAAACCATATTTATCTGAATAGTCAACCCACTTGCT 840
consensus_4569#1      TGAGTTATCACACAACTGATACCCCC--TCGTG-----CCGAAT-----TCCTGGCCGCT 293
                      *************************    * *      * ****      **     ***

consensus_4569#0      GACCCAGTATATTGGACAGGCTGCTGGAACTTCACTTTCTTCCATTGCTTTT 892
consensus_4569#1      GA-------------------------------------------------- 295
                      **