These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4569#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 892 fasta sequence [AGTGTACAAAATTTCTATCAGAAAAATGTGACTAAATTAAATCAGATTCGATTTGAAAGAGATACTGCTAAGTATTAACGACATTGACATTGTGAGTTCAGTTTGAAGAATAAAAACGAATAGAAAATAAAACGGAGACTATTGATTAGTCGGTCGAGTTATTTTTTTAGTCGCTGCCCCAGTCCCAGTCGCATTTGTTTTCTGTACATCCGCTGAAACTGGTTTGTTGGACTTCCCATTATCTACAGTCATTTTTGTATTGGGATCATTTACATTGGAGGAAGTTGTTCCGCATTTTGGAATGAGACGCTCTATCATTTCTTGTGCGTATCTCAATCTGTTTGCTAAGTCCTTACTTAAACCGAATTCCCGTAGATGTTTGAAGCGGTACGTTCTGAATTCCCTGTTGGCATCAATATAAGTTACGGCACGCATTAAAGGACATAGAATGATTTTTGCATGATCATCAAAGAAGTTTATTTGCAACGTTCCATTACTTAAATGAAGTACAATAGCCGAGCGTGTTCTAAACCATCGGCGAAGAAAAGGTAGACGAGTCATGGCATCAGTGTCCGGTCGCGCAATATTCTCACCAGCCTTAAGGAGATTCTGGTGCATATATGCTTTGAAGCATGTGAGAAGTGTCACTTTTTTTGACAGATATTCCGGATGCTTTGACAGAGTGAACAAACGTTCAGTCCCATGTTCGTCGATGTACTGAAGATTCTGTTCATTGGTTGTTAAAAGGAGTCTTGTCACGTCATTGAATACGACACCATATGAGTTATCACACAACTGATACCCCAAACCATATTTATCTGAATAGTCAACCCACTTGCTGACCCAGTATATTGGACAGGCTGCTGGAACTTCACTTTCTTCCATTGCTTTT] [+] EMBL CD140625 [AGTGTACAAAATTTCTATCAGAAAAATGTGACTAAATTAAATCAGATTCGATTTGAAAGAGATACTGCTAAGTATTAACGACATTGACATTGTGAGTTCAGTTTGAAGAATAAAAACGAATAGAAAATAAAACGGAGACTATTGATTAGTCGGTCGAGTTATTTTTTTAGTCGCTGCCCCAGTCCCAGTCGCATTTGTTTTCTGTACATCCGCTGAAACTGGTTTGTTGGACTTCCCATTATCTACAGTCATTTTTGTATTGGGATCATTTACATTGGAGGAAGTTGTTCCGCATTTTGGAATGAGAC ] [+] EMBL CD075183 [ tatacgtatATTTTTGTATTGGGATCATTTACATTGGAGGAAGTTGTTCCGCATTTTGGAATGAGACGCTCTATCATTTCTTGTGCGTATCTCAATCTGTTTGCTAAGTCCTTACTTAAACCGAATTCCCGTAGATGTTTGAAGCGGTACGTTCTGAATTCCCTGTTGGCATCAATATAAGTTACGGCACGCATTAAAGGACATAGAATGATTTTTGCATGATCATCAAAGAAGTTTATTTGCAACGTTCCATTACTTAAATGAAGTACAATAGCCGAGCGTGTTCTAAACCATCGGCGAAGAAAAGGTAGACGAGTCATGGCATCAGTGTCCGGTCGCGCAATATTCTCACCAGCCTTAAGGAGATTCTGGTGCATATATGCTTTGAAGCATGTGAGAAGTGTCACTTTTTTTGACAGATATTCCGGATGCTTTGACAGAGTGAACAAACGTTCAGTCCCATGTTCGTCGATGTACTGAAGATTCTGTTCATTGGTTGTTAAAAGGAGTCTTGTCACGTCATTGAATACGACACCATATGAGTTATCACACAACTGATACCCCAAACCATATTTATCTGAATAGTCAACCCACTTGCTGACCCAGTATATTGGACAGGCTGCTGGAACTTCACTTTCTTCCATTGCTTTT] consensusID : consensus_4569#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [CGGCGAAGAAAAGGTAGACGAGTCATGGCATCAGTGTCCGGTCGCGCAATATTCTCACCAGCCTTAAGGAGATTCTGGTGCATATATGCTTTGAAGCATGTGAGAAGTGTCACTTTTTTTGACAGATATTCCGGATGCTTTGACAGAGTGAACAAACGTTCAGTCCCATGTTCGTCGATGTACTGAAGATTCTGTTCATTGGTTGTTAAAAGGAGTCTTGTCACGTCATTGAATACGACACCATATGAGTTATCACACAACTGATACCCCCTCGTGCCGAATTCCTGGCCGCTGA] [-] EMBL CD077767 [CGGCGAAGAAAAGGTAGACGAGTCATGGCATCAGTGTCCGGTCGCGCAATATTCTCACCAGCCTTAAGGAGATTCTGGTGCATATATGCTTTGAAGCATGTGAGAAGTGTCACTTTTTTTGACAGATATTCCGGATGCTTTGACAGAGTGAACAAACGTTCAGTCCCATGTTCGTCGATGTACTGAAGATTCTGTTCATTGGTTGTTAAAAGGAGTCTTGTCACGTCATTGAATACGACACCATATGAGTTATCACACAACTGATACCCCCTCGTGCCGAATTCCTGGCCGCTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4569#0 AGTGTACAAAATTTCTATCAGAAAAATGTGACTAAATTAAATCAGATTCGATTTGAAAGA 60 consensus_4569#1 ------------------------------------------------------------ consensus_4569#0 GATACTGCTAAGTATTAACGACATTGACATTGTGAGTTCAGTTTGAAGAATAAAAACGAA 120 consensus_4569#1 ------------------------------------------------------------ consensus_4569#0 TAGAAAATAAAACGGAGACTATTGATTAGTCGGTCGAGTTATTTTTTTAGTCGCTGCCCC 180 consensus_4569#1 ------------------------------------------------------------ consensus_4569#0 AGTCCCAGTCGCATTTGTTTTCTGTACATCCGCTGAAACTGGTTTGTTGGACTTCCCATT 240 consensus_4569#1 ------------------------------------------------------------ consensus_4569#0 ATCTACAGTCATTTTTGTATTGGGATCATTTACATTGGAGGAAGTTGTTCCGCATTTTGG 300 consensus_4569#1 ------------------------------------------------------------ consensus_4569#0 AATGAGACGCTCTATCATTTCTTGTGCGTATCTCAATCTGTTTGCTAAGTCCTTACTTAA 360 consensus_4569#1 ------------------------------------------------------------ consensus_4569#0 ACCGAATTCCCGTAGATGTTTGAAGCGGTACGTTCTGAATTCCCTGTTGGCATCAATATA 420 consensus_4569#1 ------------------------------------------------------------ consensus_4569#0 AGTTACGGCACGCATTAAAGGACATAGAATGATTTTTGCATGATCATCAAAGAAGTTTAT 480 consensus_4569#1 ------------------------------------------------------------ consensus_4569#0 TTGCAACGTTCCATTACTTAAATGAAGTACAATAGCCGAGCGTGTTCTAAACCATCGGCG 540 consensus_4569#1 -------------------------------------------------------CGGCG 5 ***** consensus_4569#0 AAGAAAAGGTAGACGAGTCATGGCATCAGTGTCCGGTCGCGCAATATTCTCACCAGCCTT 600 consensus_4569#1 AAGAAAAGGTAGACGAGTCATGGCATCAGTGTCCGGTCGCGCAATATTCTCACCAGCCTT 65 ************************************************************ consensus_4569#0 AAGGAGATTCTGGTGCATATATGCTTTGAAGCATGTGAGAAGTGTCACTTTTTTTGACAG 660 consensus_4569#1 AAGGAGATTCTGGTGCATATATGCTTTGAAGCATGTGAGAAGTGTCACTTTTTTTGACAG 125 ************************************************************ consensus_4569#0 ATATTCCGGATGCTTTGACAGAGTGAACAAACGTTCAGTCCCATGTTCGTCGATGTACTG 720 consensus_4569#1 ATATTCCGGATGCTTTGACAGAGTGAACAAACGTTCAGTCCCATGTTCGTCGATGTACTG 185 ************************************************************ consensus_4569#0 AAGATTCTGTTCATTGGTTGTTAAAAGGAGTCTTGTCACGTCATTGAATACGACACCATA 780 consensus_4569#1 AAGATTCTGTTCATTGGTTGTTAAAAGGAGTCTTGTCACGTCATTGAATACGACACCATA 245 ************************************************************ consensus_4569#0 TGAGTTATCACACAACTGATACCCCAAACCATATTTATCTGAATAGTCAACCCACTTGCT 840 consensus_4569#1 TGAGTTATCACACAACTGATACCCCC--TCGTG-----CCGAAT-----TCCTGGCCGCT 293 ************************* * * * **** ** *** consensus_4569#0 GACCCAGTATATTGGACAGGCTGCTGGAACTTCACTTTCTTCCATTGCTTTT 892 consensus_4569#1 GA-------------------------------------------------- 295 ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||