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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 803 fasta sequence
[CAGCCAGATTCGGCCGAGGAAGCAATTGGCCGAGTTGTTCTGGGTTGCAATGAAACAGGAGCAGGTTTACGTCATTGGTCAGATATGTTAGCCAATCCTCGTCGACCTATTGCACAATGGCACACTTTACAACCAATGCCTGAGAAAGGTTAAAAAAAAATATGTAACTGCAAAAGAAAACTCAAACGATACTCAACAATTTATTTCACTATTTTCCTCTAGTGTACCTACCTACCTATCTTTCTAACAGGATTATATTCTAGTCACAAAGCAATAAAACATTTAGAGAATGGTATGTAACAAATGAAGAAGAAAAAAAAACAACCAAATACAGTAAAATACTACAAACTATGAATTTCTTATATATTTATCAGTTACTTATTCCCGGGTTCTATTCTACTACTTGGTAAAAGTAATAGAAGAAGACTAGAATGATATTCATTTAAAGTGTGTAACTTTAACATGTAACCAATACAGAAACAATTGTCTCACTATATACATCATCTATGGATACTTAAATAAATAATCATTTTTTTCATTTAGTGTTTTCTTAATTGAGAATAATTTCAATTTACCAACCACCCACCCACCCCCCTTTCTTTGATTGAATTTGTGTCCATGGATAAATCACAGCTCATTTTCAAAAATTCTTTACATATAATGAAAGTTTATCAACTCGTCTTTTATTTAATACCGCTCTTATATATATATACACATACACCCATAATTCTTTACCCGTTTCTTTTTTTTTCTCGTGGGGAATCATTGTGACATTCAATTCTTATAGAAACTAATCTGTTATC]
[+] EMBL CD079883 [CAGCCAGATTCGGCCGAGGAAGCAATTGGCCGAGTTGTTCTGGGTTGCAATGAAACAGGAGCAGGTTTACGTCATTGGTCAGATATGTTAGCCAATCCTCGTCGACCTATTGCACAATGGCACACTTTACAACCAATGCCTGAGAAAGGTTAAAAAAAAATATGTAACTGCAAAAGAAAACTCAAACGATACTCAACAATTTATTTCACTATTTTCCTCTAGTGTACCTACCTACCTATCTTTCTAACAGGATTATATTCTAGTCACAAAGCAATAAAACATTTAGAGAATGGTATGTAACAAATGAAGAAGAAAAAAAAACAACCAAATACAGTAAAATACTACAAACTATGAATTTCTTATATATTTATCAGTTACTTATTCCCGGGTTCTATTCTACTACTTGGTAAAAGTAATAGAAGAAGACTAGAATGATATTCATTTAAAGTGTGTAACTTTAACATGTAACCAATACAGAAACAATTGTCTCACTATATACATCATCTATGGATACTTAAATAAATAATCATTTTTTTCATTTAGTGTTTTCTTAATTGAGAATAATTTCAATTTACCAACCACCCACCCACCCCCCTTTCTTTGATTGAATTTGTGTCCATGGATAAATCACAGCTCATTTTCAAAAATTCTTTACATATAATGAAAGTTTATCAACTCGTCTTTTATTTAATACCGCTCTTATATATATATACACATACA ]
[+] EMBL CD141445 [ TTGTCTCACTATATACATCATCTATGGATACTTAAATAAATAATCATTTTTTTCATTTAGTGTTTTCTTAATTGAGAATAATTTCAATTTACCAACCACCCACCCACCCCCCTTTCTTTGATTGAATTTGTGTCCATGGATAAATCACAGCTCATTTTCAAAAATTCTTTACATATAATGAAAGTTTATCAACTCGTCTTTTATTTAATACCGCTCTTATATATATATACACATACACCCATAATTCTTTACCCGTTTCTTTTTTTTTCTCGTGGGGAATCATTGTGACATTCAATTCTTATAGAAACTAATCTGTTATC]
consensusID : consensus_4571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 213 fasta sequence
[ATTGGTACATCAGAAGCAATTGGCCGAGTTGTTCTGGGTTGCAATGAAACAGGAGCAGGTTTACGTCATTGGTCAGATATGTTAGCCAATCCTCGTCGACCTATTGCACAATGGCACACTTTACAACCAATGCCTGAGAAAGGTTAAAAAAAAATATGTAACTGCAAAAGAAAACTCAAACGATACTCAACAATTTATTTCACTATTTTCCTC]
[+] EMBL CD128110 [ATTGGTACATCAGAAGCAATTGGCCGAGTTGTTCTGGGTTGCAATGAAACAGGAGCAGGTTTACGTCATTGGTCAGATATGTTAGCCAATCCTCGTCGACCTATTGCACAATGGCACACTTTACAACCAATGCCTGAGAAAGGTTAAAAAAAAATATGTAACTGCAAAAGAAAACTCAAACGATACTCAACAATTTATTTCACTATTTTCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4571#0 CAGCCAGATTCGGCCGA-GGAAGCAATTGGCCGAGTTGTTCTGGGTTGCAATGAAACAGG 59
consensus_4571#1 -------ATTGGTACATCAGAAGCAATTGGCCGAGTTGTTCTGGGTTGCAATGAAACAGG 53
*** * * *****************************************
consensus_4571#0 AGCAGGTTTACGTCATTGGTCAGATATGTTAGCCAATCCTCGTCGACCTATTGCACAATG 119
consensus_4571#1 AGCAGGTTTACGTCATTGGTCAGATATGTTAGCCAATCCTCGTCGACCTATTGCACAATG 113
************************************************************
consensus_4571#0 GCACACTTTACAACCAATGCCTGAGAAAGGTTAAAAAAAAATATGTAACTGCAAAAGAAA 179
consensus_4571#1 GCACACTTTACAACCAATGCCTGAGAAAGGTTAAAAAAAAATATGTAACTGCAAAAGAAA 173
************************************************************
consensus_4571#0 ACTCAAACGATACTCAACAATTTATTTCACTATTTTCCTCTAGTGTACCTACCTACCTAT 239
consensus_4571#1 ACTCAAACGATACTCAACAATTTATTTCACTATTTTCCTC-------------------- 213
****************************************
consensus_4571#0 CTTTCTAACAGGATTATATTCTAGTCACAAAGCAATAAAACATTTAGAGAATGGTATGTA 299
consensus_4571#1 ------------------------------------------------------------
consensus_4571#0 ACAAATGAAGAAGAAAAAAAAACAACCAAATACAGTAAAATACTACAAACTATGAATTTC 359
consensus_4571#1 ------------------------------------------------------------
consensus_4571#0 TTATATATTTATCAGTTACTTATTCCCGGGTTCTATTCTACTACTTGGTAAAAGTAATAG 419
consensus_4571#1 ------------------------------------------------------------
consensus_4571#0 AAGAAGACTAGAATGATATTCATTTAAAGTGTGTAACTTTAACATGTAACCAATACAGAA 479
consensus_4571#1 ------------------------------------------------------------
consensus_4571#0 ACAATTGTCTCACTATATACATCATCTATGGATACTTAAATAAATAATCATTTTTTTCAT 539
consensus_4571#1 ------------------------------------------------------------
consensus_4571#0 TTAGTGTTTTCTTAATTGAGAATAATTTCAATTTACCAACCACCCACCCACCCCCCTTTC 599
consensus_4571#1 ------------------------------------------------------------
consensus_4571#0 TTTGATTGAATTTGTGTCCATGGATAAATCACAGCTCATTTTCAAAAATTCTTTACATAT 659
consensus_4571#1 ------------------------------------------------------------
consensus_4571#0 AATGAAAGTTTATCAACTCGTCTTTTATTTAATACCGCTCTTATATATATATACACATAC 719
consensus_4571#1 ------------------------------------------------------------
consensus_4571#0 ACCCATAATTCTTTACCCGTTTCTTTTTTTTTCTCGTGGGGAATCATTGTGACATTCAAT 779
consensus_4571#1 ------------------------------------------------------------
consensus_4571#0 TCTTATAGAAACTAATCTGTTATC 803
consensus_4571#1 ------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||