These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4581#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [TTGATTCCTTTGTTTTTGAGCTCTAGGTTAAGTAATATACCTCTGGAAATGGGTGATCGATACAATATTCATACTCAGTTAGAACATTTACAATCAAAATATGTTGGTAAGCCACATTCTGGTGCCATTAGTATTCTTATCCTATTAGGCACAGGCCATGCTGATACCACTAAGTGGGAATGGTTAACAAATCGACATAGAGATAGTTGCGCATCCTATCTGGGTCGCTTTGACATGCTTAACTTGTTTGCTATCTGCGAAAATGAATGCAAGGCGAGAGTTCGATTTAACCTTCTCGAGAAAATGCTTCAGCCATGTGGTCCTCCTCCGGAACGTCCTGAGTCATAGTTTACTATGTATTCTATCAAACTACAACCTCTGACAATTGTTTTTTGCTTGATGG] [+] EMBL CD144909 [TTGATTCCTTTGTTTTTGAGCTCTAGGTTAAGTAATATACCTCTGGAAATGGGTGATCGATACAATATTCATACTCAGTTAGAACATTTACAATCAAAATATGTTGGTAAGCCACATTCTGGTGCCATTAGTATTCTTATCCTATTAGGCACAGGCCATGCTGATACCACTAAGTGGGAATGGTTAACAAATCGACATAGAGATAGTTGCGCATCCTATCTGGGTCGCTTTGACATGCTTAACTTGTTTGCTATCTGCGAAAATGAATGCAAGGCGAGAGTTCGATTTAACCTTCTCGAGAAAATGCTTCAGCCATGTGGTCCTCCTCCGGAACGTCCTGAGTCATAGTTTACTATGTATTCTATCAAACTACAACCTCTGACAATTGTTTTTTGCTTGATGG] consensusID : consensus_4581#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 285 fasta sequence [GGGATCGATACAATGTGGATAGGCAGTTAGAACATTTACAATCAAAATATGTTGGCACAGGCCATGCTGATACCACTAAGTGGGAATGGCTAACAAATCAACATAGAGATGGTTGCGCATCCTATCTGGGTCACTTTGACATGCTTAACTTGTTTGCTATCTGCG-AAAATGAATGCAAAGCGAGAGTTCGATTTAACCTTCTCGAGAAAATGCTTCAGCCATGTGACCCCCTCCGCCGGAATCGATACTCTGAGTCATTGAGGTTTACTATGCTAGGACTATCGA] [+] EMBL BG931405 [GGGATCGATACAATGTGGATAGGCAGTTAGAACATTTACAATCAAAATATGTTGGCACAGGCCATGCTGATACCACTAAGTGGGAATGGCTAACAAATCAACATAGAGATGGTTGCGCATCCTATCTGGGTCACTTTGACATGCTTAACTTGTTTGCTATCTGCG AAAATGAATGCAAAGCGAGAGTTCGATTTAACCTTCTCGAGAAAATGCTTCAGCCATGTGACCCC ] [+] EMBL AA801614 [ ATGCTTAACTTGTTTGCTATCTGCGTTAAATGAATGCAAGGCGAGAGTTCGATTTAACCTTCTCGAGAAAATGCTTC GGCTTGTGGCTACCTCCGCCGGAATCGATACTCTGAGTCATTGAGGTTTACTATGCTAGGACTATCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4581#0 TTGATTCCTTTGTTTTTGAGCTCTAGGTTAAGTAATATACCTCTGGAAATGGGTGATCGA 60 consensus_4581#1 ----------------------------------------------------GGGATCGA 8 * ****** consensus_4581#0 TACAATATTCATACTCAGTTAGAACATTTACAATCAAAATATGTTGGTAAGCCACATTCT 120 consensus_4581#1 TACAATGTGGATAGGCAGTTAGAACATTTACAATCAAAATATGTTGG------------- 55 ****** * *** ******************************** consensus_4581#0 GGTGCCATTAGTATTCTTATCCTATTAGGCACAGGCCATGCTGATACCACTAAGTGGGAA 180 consensus_4581#1 -----------------------------CACAGGCCATGCTGATACCACTAAGTGGGAA 86 ******************************* consensus_4581#0 TGGTTAACAAATCGACATAGAGATAGTTGCGCATCCTATCTGGGTCGCTTTGACATGCTT 240 consensus_4581#1 TGGCTAACAAATCAACATAGAGATGGTTGCGCATCCTATCTGGGTCACTTTGACATGCTT 146 *** ********* ********** ********************* ************* consensus_4581#0 AACTTGTTTGCTATCTGCGAAAATGAATGCAAGGCGAGAGTTCGATTTAACCTTCTCGAG 300 consensus_4581#1 AACTTGTTTGCTATCTGCGAAAATGAATGCAAAGCGAGAGTTCGATTTAACCTTCTCGAG 206 ******************************** *************************** consensus_4581#0 AAAATGCTTCAGCCATGTGGTCCTCCTCCGGAACGTCCTGAGTCATAGTTTACTATGTAT 360 consensus_4581#1 AAAATGCTTCAGCCATGTGACCCCCTCCGCCGGAATCGATACTCTGAGT---CATTGAGG 263 ******************* ** * * ** * ** *** * ** consensus_4581#0 TCTATCAAACTACAACCTCTGACAATTGTTTTTTGCTTGATGG 403 consensus_4581#1 TTTACTATGCTAGGACTATCGA--------------------- 285 * ** * *** ** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||