cluster # 4581

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4581 cluster # 4581 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4581#0 length = 403 sequences # 1

consensus_4581#1 length = 285 sequences # 2

consensusID : consensus_4581#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence

                              [TTGATTCCTTTGTTTTTGAGCTCTAGGTTAAGTAATATACCTCTGGAAATGGGTGATCGATACAATATTCATACTCAGTTAGAACATTTACAATCAAAATATGTTGGTAAGCCACATTCTGGTGCCATTAGTATTCTTATCCTATTAGGCACAGGCCATGCTGATACCACTAAGTGGGAATGGTTAACAAATCGACATAGAGATAGTTGCGCATCCTATCTGGGTCGCTTTGACATGCTTAACTTGTTTGCTATCTGCGAAAATGAATGCAAGGCGAGAGTTCGATTTAACCTTCTCGAGAAAATGCTTCAGCCATGTGGTCCTCCTCCGGAACGTCCTGAGTCATAGTTTACTATGTATTCTATCAAACTACAACCTCTGACAATTGTTTTTTGCTTGATGG]

[+] EMBL CD144909             [TTGATTCCTTTGTTTTTGAGCTCTAGGTTAAGTAATATACCTCTGGAAATGGGTGATCGATACAATATTCATACTCAGTTAGAACATTTACAATCAAAATATGTTGGTAAGCCACATTCTGGTGCCATTAGTATTCTTATCCTATTAGGCACAGGCCATGCTGATACCACTAAGTGGGAATGGTTAACAAATCGACATAGAGATAGTTGCGCATCCTATCTGGGTCGCTTTGACATGCTTAACTTGTTTGCTATCTGCGAAAATGAATGCAAGGCGAGAGTTCGATTTAACCTTCTCGAGAAAATGCTTCAGCCATGTGGTCCTCCTCCGGAACGTCCTGAGTCATAGTTTACTATGTATTCTATCAAACTACAACCTCTGACAATTGTTTTTTGCTTGATGG]




>consensus_4581#0
TTGATTCCTTTGTTTTTGAGCTCTAGGTTAAGTAATATACCTCTGGAAATGGGTGATCGA
TACAATATTCATACTCAGTTAGAACATTTACAATCAAAATATGTTGGTAAGCCACATTCT
GGTGCCATTAGTATTCTTATCCTATTAGGCACAGGCCATGCTGATACCACTAAGTGGGAA
TGGTTAACAAATCGACATAGAGATAGTTGCGCATCCTATCTGGGTCGCTTTGACATGCTT
AACTTGTTTGCTATCTGCGAAAATGAATGCAAGGCGAGAGTTCGATTTAACCTTCTCGAG
AAAATGCTTCAGCCATGTGGTCCTCCTCCGGAACGTCCTGAGTCATAGTTTACTATGTAT
TCTATCAAACTACAACCTCTGACAATTGTTTTTTGCTTGATGG

consensusID : consensus_4581#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 285
fasta sequence

                              [GGGATCGATACAATGTGGATAGGCAGTTAGAACATTTACAATCAAAATATGTTGGCACAGGCCATGCTGATACCACTAAGTGGGAATGGCTAACAAATCAACATAGAGATGGTTGCGCATCCTATCTGGGTCACTTTGACATGCTTAACTTGTTTGCTATCTGCG-AAAATGAATGCAAAGCGAGAGTTCGATTTAACCTTCTCGAGAAAATGCTTCAGCCATGTGACCCCCTCCGCCGGAATCGATACTCTGAGTCATTGAGGTTTACTATGCTAGGACTATCGA]

[+] EMBL BG931405             [GGGATCGATACAATGTGGATAGGCAGTTAGAACATTTACAATCAAAATATGTTGGCACAGGCCATGCTGATACCACTAAGTGGGAATGGCTAACAAATCAACATAGAGATGGTTGCGCATCCTATCTGGGTCACTTTGACATGCTTAACTTGTTTGCTATCTGCG AAAATGAATGCAAAGCGAGAGTTCGATTTAACCTTCTCGAGAAAATGCTTCAGCCATGTGACCCC                                                       ]
[+] EMBL AA801614             [                                                                                                                                            ATGCTTAACTTGTTTGCTATCTGCGTTAAATGAATGCAAGGCGAGAGTTCGATTTAACCTTCTCGAGAAAATGCTTC GGCTTGTGGCTACCTCCGCCGGAATCGATACTCTGAGTCATTGAGGTTTACTATGCTAGGACTATCGA]




>consensus_4581#1
GGGATCGATACAATGTGGATAGGCAGTTAGAACATTTACAATCAAAATATGTTGGCACAG
GCCATGCTGATACCACTAAGTGGGAATGGCTAACAAATCAACATAGAGATGGTTGCGCAT
CCTATCTGGGTCACTTTGACATGCTTAACTTGTTTGCTATCTGCGAAAATGAATGCAAAG
CGAGAGTTCGATTTAACCTTCTCGAGAAAATGCTTCAGCCATGTGACCCCCTCCGCCGGA
ATCGATACTCTGAGTCATTGAGGTTTACTATGCTAGGACTATCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4581#0      TTGATTCCTTTGTTTTTGAGCTCTAGGTTAAGTAATATACCTCTGGAAATGGGTGATCGA 60
consensus_4581#1      ----------------------------------------------------GGGATCGA 8
                                                                          * ******

consensus_4581#0      TACAATATTCATACTCAGTTAGAACATTTACAATCAAAATATGTTGGTAAGCCACATTCT 120
consensus_4581#1      TACAATGTGGATAGGCAGTTAGAACATTTACAATCAAAATATGTTGG------------- 55
                      ****** *  ***  ********************************             

consensus_4581#0      GGTGCCATTAGTATTCTTATCCTATTAGGCACAGGCCATGCTGATACCACTAAGTGGGAA 180
consensus_4581#1      -----------------------------CACAGGCCATGCTGATACCACTAAGTGGGAA 86
                                                   *******************************

consensus_4581#0      TGGTTAACAAATCGACATAGAGATAGTTGCGCATCCTATCTGGGTCGCTTTGACATGCTT 240
consensus_4581#1      TGGCTAACAAATCAACATAGAGATGGTTGCGCATCCTATCTGGGTCACTTTGACATGCTT 146
                      *** ********* ********** ********************* *************

consensus_4581#0      AACTTGTTTGCTATCTGCGAAAATGAATGCAAGGCGAGAGTTCGATTTAACCTTCTCGAG 300
consensus_4581#1      AACTTGTTTGCTATCTGCGAAAATGAATGCAAAGCGAGAGTTCGATTTAACCTTCTCGAG 206
                      ******************************** ***************************

consensus_4581#0      AAAATGCTTCAGCCATGTGGTCCTCCTCCGGAACGTCCTGAGTCATAGTTTACTATGTAT 360
consensus_4581#1      AAAATGCTTCAGCCATGTGACCCCCTCCGCCGGAATCGATACTCTGAGT---CATTGAGG 263
                      *******************  ** *  *       **   * **  ***   *  **   

consensus_4581#0      TCTATCAAACTACAACCTCTGACAATTGTTTTTTGCTTGATGG 403
consensus_4581#1      TTTACTATGCTAGGACTATCGA--------------------- 285
                      * **  *  ***  **    **