These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4582#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 689 fasta sequence [TCGTACGTCATGTGGACCTAACGCGTGCCGCTGTGGATGTGTAGGAGATGCATGACCAGCTGTAGGCGATGTACTTGATCAGACTGTAGTACCGCACACTGCTGCTGTGAATGAGCAGGCTGGCCGCACAGCTATTGTGGCATACGTTCATCACCTGATCGCCTATATCCATGTCTTGGTTGTCTATGTGCGTAGGTATACTGCGGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTAGCTGGAGTTCCTGACAAGAAGCTGGTGGAGACTGTTGCAGGTGACTCAGTGTCAGGCATTGTGCACGACCGAATGGACAGACAAACTATGGACTTATGTGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGACAGAGGTTGATGACACGGACAGAGTGGAGGCAGAC] [+] EMBL CD183480 [TCGTACGTCATGTGGACCTAACGCGTGCCGCTGTGGATGTGTAGGAGATGCATGACCAGCTGTAGGCGATGTACTTGATCAGACTGTAGTACCGCACACTGCTGCTGTGAATGAGCAGGCTGGCCGCACAGCTATTGTGGCATACGTTCATCACCTGATCGCCTATATCCATGTCTTGGTTGTCTATGTGCGTAGGTATACTGCGGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGGCAG ] [+] EMBL CD092849 [ GGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTAGCTGGAGTTCCTGACAAGAAGCTGGTGGAGACTGTTGCAGGTGACTCAGTGTCAGGCATTGTGCACGACCGAATGGACAGACAAACTATGGACTTATGTGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGACAGAGGTTGATGACACGGACAGAGTGGAGGCAGAC] consensusID : consensus_4582#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 184 fasta sequence [TGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTTGCTGGAGTTCCTGACAAGAAGCTGGTGGAGACTGTTGCAGGTGACTCGTGGGAAGTNCCAGGGTACCG] [-] EMBL CD065930 [TGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTTGCTGGAGTTCCTGACAAGAAGCTGGTGGAGACTGTTGCAGGTGACTCGTGGGAAGTNCCAGGGTACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4582#0 TCGTACGTCATGTGGACCTAACGCGTGCCGCTGTGGATGTGTAGGAGATGCATGACCAGC 60 consensus_4582#1 ------------------------------------------------------------ consensus_4582#0 TGTAGGCGATGTACTTGATCAGACTGTAGTACCGCACACTGCTGCTGTGAATGAGCAGGC 120 consensus_4582#1 ------------------------------------------------------------ consensus_4582#0 TGGCCGCACAGCTATTGTGGCATACGTTCATCACCTGATCGCCTATATCCATGTCTTGGT 180 consensus_4582#1 ------------------------------------------------------------ consensus_4582#0 TGTCTATGTGCGTAGGTATACTGCGGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGA 240 consensus_4582#1 ------------------------------------------------------------ consensus_4582#0 GTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAG 300 consensus_4582#1 -----------------------------------------------TGGTGAACGAGAG 13 ************* consensus_4582#0 GACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTT 360 consensus_4582#1 GACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTT 73 ************************************************************ consensus_4582#0 GGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTAGCTGGAGTTCCTGACAA 420 consensus_4582#1 GGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTTGCTGGAGTTCCTGACAA 133 ****************************************** ***************** consensus_4582#0 GAAGCTGGTGGAGACTGTTGCAGGTGACTCAGTGTCAGGCATTGTGCACGACCGAATGGA 480 consensus_4582#1 GAAGCTGGTGGAGACTGTTGCAGGTGACTCGTGGGAAGTNCCAGGGTACCG--------- 184 ****************************** * ** * * ** consensus_4582#0 CAGACAAACTATGGACTTATGTGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGA 540 consensus_4582#1 ------------------------------------------------------------ consensus_4582#0 TGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGT 600 consensus_4582#1 ------------------------------------------------------------ consensus_4582#0 CGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGACAGAGG 660 consensus_4582#1 ------------------------------------------------------------ consensus_4582#0 TTGATGACACGGACAGAGTGGAGGCAGAC 689 consensus_4582#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||