Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4582 cluster # 4582       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4582#0 length = 689 sequences # 2  
consensus_4582#1 length = 184 sequences # 1  

consensusID : consensus_4582#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 689
fasta sequence
                              [TCGTACGTCATGTGGACCTAACGCGTGCCGCTGTGGATGTGTAGGAGATGCATGACCAGCTGTAGGCGATGTACTTGATCAGACTGTAGTACCGCACACTGCTGCTGTGAATGAGCAGGCTGGCCGCACAGCTATTGTGGCATACGTTCATCACCTGATCGCCTATATCCATGTCTTGGTTGTCTATGTGCGTAGGTATACTGCGGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTAGCTGGAGTTCCTGACAAGAAGCTGGTGGAGACTGTTGCAGGTGACTCAGTGTCAGGCATTGTGCACGACCGAATGGACAGACAAACTATGGACTTATGTGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGACAGAGGTTGATGACACGGACAGAGTGGAGGCAGAC]

[+] EMBL CD183480             [TCGTACGTCATGTGGACCTAACGCGTGCCGCTGTGGATGTGTAGGAGATGCATGACCAGCTGTAGGCGATGTACTTGATCAGACTGTAGTACCGCACACTGCTGCTGTGAATGAGCAGGCTGGCCGCACAGCTATTGTGGCATACGTTCATCACCTGATCGCCTATATCCATGTCTTGGTTGTCTATGTGCGTAGGTATACTGCGGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGGCAG                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD092849             [                                                                                                                                                                                                            GGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTAGCTGGAGTTCCTGACAAGAAGCTGGTGGAGACTGTTGCAGGTGACTCAGTGTCAGGCATTGTGCACGACCGAATGGACAGACAAACTATGGACTTATGTGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGACAGAGGTTGATGACACGGACAGAGTGGAGGCAGAC]


>consensus_4582#0 TCGTACGTCATGTGGACCTAACGCGTGCCGCTGTGGATGTGTAGGAGATGCATGACCAGC TGTAGGCGATGTACTTGATCAGACTGTAGTACCGCACACTGCTGCTGTGAATGAGCAGGC TGGCCGCACAGCTATTGTGGCATACGTTCATCACCTGATCGCCTATATCCATGTCTTGGT TGTCTATGTGCGTAGGTATACTGCGGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGA GTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAG GACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTT GGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTAGCTGGAGTTCCTGACAA GAAGCTGGTGGAGACTGTTGCAGGTGACTCAGTGTCAGGCATTGTGCACGACCGAATGGA CAGACAAACTATGGACTTATGTGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGA TGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGT CGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGACAGAGG TTGATGACACGGACAGAGTGGAGGCAGAC



consensusID : consensus_4582#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 184
fasta sequence
                              [TGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTTGCTGGAGTTCCTGACAAGAAGCTGGTGGAGACTGTTGCAGGTGACTCGTGGGAAGTNCCAGGGTACCG]

[-] EMBL CD065930             [TGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTTGCTGGAGTTCCTGACAAGAAGCTGGTGGAGACTGTTGCAGGTGACTCGTGGGAAGTNCCAGGGTACCG]


>consensus_4582#1 TGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGG TTGTCGGTGAGTTGGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTTGCTG GAGTTCCTGACAAGAAGCTGGTGGAGACTGTTGCAGGTGACTCGTGGGAAGTNCCAGGGT ACCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4582#0      TCGTACGTCATGTGGACCTAACGCGTGCCGCTGTGGATGTGTAGGAGATGCATGACCAGC 60
consensus_4582#1      ------------------------------------------------------------
                                                                                  

consensus_4582#0      TGTAGGCGATGTACTTGATCAGACTGTAGTACCGCACACTGCTGCTGTGAATGAGCAGGC 120
consensus_4582#1      ------------------------------------------------------------
                                                                                  

consensus_4582#0      TGGCCGCACAGCTATTGTGGCATACGTTCATCACCTGATCGCCTATATCCATGTCTTGGT 180
consensus_4582#1      ------------------------------------------------------------
                                                                                  

consensus_4582#0      TGTCTATGTGCGTAGGTATACTGCGGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGA 240
consensus_4582#1      ------------------------------------------------------------
                                                                                  

consensus_4582#0      GTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAG 300
consensus_4582#1      -----------------------------------------------TGGTGAACGAGAG 13
                                                                     *************

consensus_4582#0      GACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTT 360
consensus_4582#1      GACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTT 73
                      ************************************************************

consensus_4582#0      GGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTAGCTGGAGTTCCTGACAA 420
consensus_4582#1      GGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTTGCTGGAGTTCCTGACAA 133
                      ****************************************** *****************

consensus_4582#0      GAAGCTGGTGGAGACTGTTGCAGGTGACTCAGTGTCAGGCATTGTGCACGACCGAATGGA 480
consensus_4582#1      GAAGCTGGTGGAGACTGTTGCAGGTGACTCGTGGGAAGTNCCAGGGTACCG--------- 184
                      ******************************   *  **     * * **           

consensus_4582#0      CAGACAAACTATGGACTTATGTGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGA 540
consensus_4582#1      ------------------------------------------------------------
                                                                                  

consensus_4582#0      TGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGT 600
consensus_4582#1      ------------------------------------------------------------
                                                                                  

consensus_4582#0      CGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGACAGAGG 660
consensus_4582#1      ------------------------------------------------------------
                                                                                  

consensus_4582#0      TTGATGACACGGACAGAGTGGAGGCAGAC 689
consensus_4582#1      -----------------------------
                                                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)