cluster # 4582

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Schistosoma mansoni
cluster # 4582 cluster # 4582 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4582#0 length = 689 sequences # 2

consensus_4582#1 length = 184 sequences # 1

consensusID : consensus_4582#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 689
fasta sequence

                              [TCGTACGTCATGTGGACCTAACGCGTGCCGCTGTGGATGTGTAGGAGATGCATGACCAGCTGTAGGCGATGTACTTGATCAGACTGTAGTACCGCACACTGCTGCTGTGAATGAGCAGGCTGGCCGCACAGCTATTGTGGCATACGTTCATCACCTGATCGCCTATATCCATGTCTTGGTTGTCTATGTGCGTAGGTATACTGCGGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTAGCTGGAGTTCCTGACAAGAAGCTGGTGGAGACTGTTGCAGGTGACTCAGTGTCAGGCATTGTGCACGACCGAATGGACAGACAAACTATGGACTTATGTGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGACAGAGGTTGATGACACGGACAGAGTGGAGGCAGAC]

[+] EMBL CD183480             [TCGTACGTCATGTGGACCTAACGCGTGCCGCTGTGGATGTGTAGGAGATGCATGACCAGCTGTAGGCGATGTACTTGATCAGACTGTAGTACCGCACACTGCTGCTGTGAATGAGCAGGCTGGCCGCACAGCTATTGTGGCATACGTTCATCACCTGATCGCCTATATCCATGTCTTGGTTGTCTATGTGCGTAGGTATACTGCGGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGGCAG                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD092849             [                                                                                                                                                                                                            GGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTAGCTGGAGTTCCTGACAAGAAGCTGGTGGAGACTGTTGCAGGTGACTCAGTGTCAGGCATTGTGCACGACCGAATGGACAGACAAACTATGGACTTATGTGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGACAGAGGTTGATGACACGGACAGAGTGGAGGCAGAC]




>consensus_4582#0
TCGTACGTCATGTGGACCTAACGCGTGCCGCTGTGGATGTGTAGGAGATGCATGACCAGC
TGTAGGCGATGTACTTGATCAGACTGTAGTACCGCACACTGCTGCTGTGAATGAGCAGGC
TGGCCGCACAGCTATTGTGGCATACGTTCATCACCTGATCGCCTATATCCATGTCTTGGT
TGTCTATGTGCGTAGGTATACTGCGGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGA
GTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAG
GACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTT
GGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTAGCTGGAGTTCCTGACAA
GAAGCTGGTGGAGACTGTTGCAGGTGACTCAGTGTCAGGCATTGTGCACGACCGAATGGA
CAGACAAACTATGGACTTATGTGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGA
TGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGT
CGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGACAGAGG
TTGATGACACGGACAGAGTGGAGGCAGAC

consensusID : consensus_4582#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 184
fasta sequence

                              [TGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTTGCTGGAGTTCCTGACAAGAAGCTGGTGGAGACTGTTGCAGGTGACTCGTGGGAAGTNCCAGGGTACCG]

[-] EMBL CD065930             [TGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTTGCTGGAGTTCCTGACAAGAAGCTGGTGGAGACTGTTGCAGGTGACTCGTGGGAAGTNCCAGGGTACCG]




>consensus_4582#1
TGGTGAACGAGAGGACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGG
TTGTCGGTGAGTTGGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTTGCTG
GAGTTCCTGACAAGAAGCTGGTGGAGACTGTTGCAGGTGACTCGTGGGAAGTNCCAGGGT
ACCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4582#0      TCGTACGTCATGTGGACCTAACGCGTGCCGCTGTGGATGTGTAGGAGATGCATGACCAGC 60
consensus_4582#1      ------------------------------------------------------------
                                                                                  

consensus_4582#0      TGTAGGCGATGTACTTGATCAGACTGTAGTACCGCACACTGCTGCTGTGAATGAGCAGGC 120
consensus_4582#1      ------------------------------------------------------------
                                                                                  

consensus_4582#0      TGGCCGCACAGCTATTGTGGCATACGTTCATCACCTGATCGCCTATATCCATGTCTTGGT 180
consensus_4582#1      ------------------------------------------------------------
                                                                                  

consensus_4582#0      TGTCTATGTGCGTAGGTATACTGCGGCGACGTTGACGGCTCTGGAGCGTTCACAGCTTGA 240
consensus_4582#1      ------------------------------------------------------------
                                                                                  

consensus_4582#0      GTTGATGATGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAG 300
consensus_4582#1      -----------------------------------------------TGGTGAACGAGAG 13
                                                                     *************

consensus_4582#0      GACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTT 360
consensus_4582#1      GACTTGGTCGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTT 73
                      ************************************************************

consensus_4582#0      GGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTAGCTGGAGTTCCTGACAA 420
consensus_4582#1      GGCAGAGGTTGATGACACGGACAGAGTGGAGGCAGACGTGTTTGCTGGAGTTCCTGACAA 133
                      ****************************************** *****************

consensus_4582#0      GAAGCTGGTGGAGACTGTTGCAGGTGACTCAGTGTCAGGCATTGTGCACGACCGAATGGA 480
consensus_4582#1      GAAGCTGGTGGAGACTGTTGCAGGTGACTCGTGGGAAGTNCCAGGGTACCG--------- 184
                      ******************************   *  **     * * **           

consensus_4582#0      CAGACAAACTATGGACTTATGTGTTGACGGCTCTGGAGCGTTCACAGCTTGAGTTGATGA 540
consensus_4582#1      ------------------------------------------------------------
                                                                                  

consensus_4582#0      TGAAACAGACCGAAGTGCAGGAACTGGAGTCACGTATCGTGGTGAACGAGAGGACTTGGT 600
consensus_4582#1      ------------------------------------------------------------
                                                                                  

consensus_4582#0      CGATTCCTTGTGAGACTGTGGGAAAGGCACCCGATGTGGTTGTCGGTGAGTTGACAGAGG 660
consensus_4582#1      ------------------------------------------------------------
                                                                                  

consensus_4582#0      TTGATGACACGGACAGAGTGGAGGCAGAC 689
consensus_4582#1      -----------------------------