cluster # 4586

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Schistosoma mansoni
cluster # 4586 cluster # 4586 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4586#0 length = 436 sequences # 1

consensus_4586#1 length = 387 sequences # 2

consensusID : consensus_4586#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [GATCATTTGTGATCAAATCAAAGAATTTTCGATGAGAAAATATCGAAGCACAAATGGCAAAGAGGATTTTTTTAAATCGGATGATCATCATTCGATGAGAAATCAAATCGAAATGGACCGACGAACGGGACGGACGGACGGACGAAAGAAGGGAAGATGGTTTTCTTTATTTTCCCAATGGACAAAGCACCTGTATGGCTAAAGCGATGAGACGTGCGGGACGGATGATTGAATCTGTTCTCTGAAGAATGAGAACATGTTTCTCATCTTGTTTTTTTTTCGATGCGAGAAAAACATAAAACGATCAAATATGTGCGTGTAACACTGGATAAATTGTTGGCAGATGTGTGTATGAAAAGATCATTGGGAAAAGGATAAAACTCTCTTCTTCTTCTTATCGAAACCAATCATTTTTCCATATCGAAATAAAATCTTC]

[+] EMBL CD140698             [GATCATTTGTGATCAAATCAAAGAATTTTCGATGAGAAAATATCGAAGCACAAATGGCAAAGAGGATTTTTTTAAATCGGATGATCATCATTCGATGAGAAATCAAATCGAAATGGACCGACGAACGGGACGGACGGACGGACGAAAGAAGGGAAGATGGTTTTCTTTATTTTCCCAATGGACAAAGCACCTGTATGGCTAAAGCGATGAGACGTGCGGGACGGATGATTGAATCTGTTCTCTGAAGAATGAGAACATGTTTCTCATCTTGTTTTTTTTTCGATGCGAGAAAAACATAAAACGATCAAATATGTGCGTGTAACACTGGATAAATTGTTGGCAGATGTGTGTATGAAAAGATCATTGGGAAAAGGATAAAACTCTCTTCTTCTTCTTATCGAAACCAATCATTTTTCCATATCGAAATAAAATCTTC]




>consensus_4586#0
GATCATTTGTGATCAAATCAAAGAATTTTCGATGAGAAAATATCGAAGCACAAATGGCAA
AGAGGATTTTTTTAAATCGGATGATCATCATTCGATGAGAAATCAAATCGAAATGGACCG
ACGAACGGGACGGACGGACGGACGAAAGAAGGGAAGATGGTTTTCTTTATTTTCCCAATG
GACAAAGCACCTGTATGGCTAAAGCGATGAGACGTGCGGGACGGATGATTGAATCTGTTC
TCTGAAGAATGAGAACATGTTTCTCATCTTGTTTTTTTTTCGATGCGAGAAAAACATAAA
ACGATCAAATATGTGCGTGTAACACTGGATAAATTGTTGGCAGATGTGTGTATGAAAAGA
TCATTGGGAAAAGGATAAAACTCTCTTCTTCTTCTTATCGAAACCAATCATTTTTCCATA
TCGAAATAAAATCTTC

consensusID : consensus_4586#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 387
fasta sequence

                              [ATTGTTTAAAGAAGGGAAGATGGTTTTCTTTATTTTCCCAATGGACAAAGCACCTGTATGGCTAAAGCGATGAGACGTGCGGGACGGATGATTGAATCTGTTCTCTGAAGAATGAGAACATGTTTCTCATCTTGTTTTTTTTTTTCGATGCGAGAACTAAAACATAGTGATGGATGACGAGGATCGGCGACTTGACGCTTACAAACATAAAACGATCAAATATGTGCGTGTAACACTGGATAAATTGTTGGCAGATGTGTGTATGAAAAGATCATTGGGAAAAGGATAAAACTCTCTTCTTCTTCTTATCGAAACAAATCATTTTTCCATATCGAAATAAAATCTTCATAACTGATCGATTTTTCTTTCAATCATCATGATCATCAG]

[+] EMBL CD092597             [ATTGTTTAAAGAAGGGAAGATGGTTTTCTTTATTTTCCCAATGGACAAAGCACCTGTATGGCTAAAGCGATGAGACGTGCGGGACGGATGATTGAATCTGTTCTCTGAAGAATGAGAACATGTTTCTCATCTTGTTTTTTTTTTTCGATGCGAGAACTAAAACATAGTGATGGATGACGAGGATCGGCGACTTGACGCTTACAAACATAAAACGATCAAATATGTGCGTGTAACACTGGATAAATTGTTGGCAGATGTGTGTATGAAAAGATCATTGGGAAAAGGATAAAACTCTCTTCTTCTTCTTATCGAAACAAATCATTTTTCCATATCGAAATAAAATCTTCATAACTGATCGATTTTTCTTTCAATCATCATGATCATCAG]
[+] EMBL CD092619             [                 AGATGGTTTTCTTTATTTTCCCAATGGACAAAGCACCTGTATGGCTAAAGCGATGAGACGTGCGGGACGGATGATTGAATCTGTTCTCTGAAGAATGAGAACATGTTTCTCATCTTG   TTTTTTTTCGATGCGAGAACTAAAACATAGTGATGGATGACGAGGATCGGCGACTTGACACTTACAAACATAAAACGATCAAATATGTGCGTGTAACACTGGATAAATTGTTGGCAGATGTGTGTATGAAAAGATCATTGGGAAAAGGATAAGACTCTCTTCTTTCTCTTATCGAAACANATCATTTTTCCATATCGAAATTAAATCCTCATAACTGATCGA TTTTCTTTCAATCATCATGATCATtca]




>consensus_4586#1
ATTGTTTAAAGAAGGGAAGATGGTTTTCTTTATTTTCCCAATGGACAAAGCACCTGTATG
GCTAAAGCGATGAGACGTGCGGGACGGATGATTGAATCTGTTCTCTGAAGAATGAGAACA
TGTTTCTCATCTTGTTTTTTTTTTTCGATGCGAGAACTAAAACATAGTGATGGATGACGA
GGATCGGCGACTTGACGCTTACAAACATAAAACGATCAAATATGTGCGTGTAACACTGGA
TAAATTGTTGGCAGATGTGTGTATGAAAAGATCATTGGGAAAAGGATAAAACTCTCTTCT
TCTTCTTATCGAAACAAATCATTTTTCCATATCGAAATAAAATCTTCATAACTGATCGAT
TTTTCTTTCAATCATCATGATCATCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4586#0      GATCATTTGTGATCAAATCAAAGAATTTTCGATGAGAAAATATCGAAGCACAAATGGCAA 60
consensus_4586#1      ------------------------------------------------------------
                                                                                  

consensus_4586#0      AGAGGATTTTTTTAAATCGGATGATCATCATTCGATGAGAAATCAAATCGAAATGGACCG 120
consensus_4586#1      ------------------------------------------------------------
                                                                                  

consensus_4586#0      ACGAACGGGACGGACGGACGGACGAAAGAAGGGAAGATGGTTTTCTTTATTTTCCCAATG 180
consensus_4586#1      -----------------ATTGTTTAAAGAAGGGAAGATGGTTTTCTTTATTTTCCCAATG 43
                                       *  *   ************************************

consensus_4586#0      GACAAAGCACCTGTATGGCTAAAGCGATGAGACGTGCGGGACGGATGATTGAATCTGTTC 240
consensus_4586#1      GACAAAGCACCTGTATGGCTAAAGCGATGAGACGTGCGGGACGGATGATTGAATCTGTTC 103
                      ************************************************************

consensus_4586#0      TCTGAAGAATGAGAACATGTTTCTCATCTTGTTTTTTTTT--CGATGCGAGAA------- 291
consensus_4586#1      TCTGAAGAATGAGAACATGTTTCTCATCTTGTTTTTTTTTTTCGATGCGAGAACTAAAAC 163
                      ****************************************  ***********       

consensus_4586#0      ---------------------------------------AAACATAAAACGATCAAATAT 312
consensus_4586#1      ATAGTGATGGATGACGAGGATCGGCGACTTGACGCTTACAAACATAAAACGATCAAATAT 223
                                                             *********************

consensus_4586#0      GTGCGTGTAACACTGGATAAATTGTTGGCAGATGTGTGTATGAAAAGATCATTGGGAAAA 372
consensus_4586#1      GTGCGTGTAACACTGGATAAATTGTTGGCAGATGTGTGTATGAAAAGATCATTGGGAAAA 283
                      ************************************************************

consensus_4586#0      GGATAAAACTCTCTTCTTCTTCTTATCGAAACCAATCATTTTTCCATATCGAAATAAAAT 432
consensus_4586#1      GGATAAAACTCTCTTCTTCTTCTTATCGAAACAAATCATTTTTCCATATCGAAATAAAAT 343
                      ******************************** ***************************

consensus_4586#0      CTTC---------------------------------------- 436
consensus_4586#1      CTTCATAACTGATCGATTTTTCTTTCAATCATCATGATCATCAG 387
                      ****