cluster # 4587

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Schistosoma mansoni
cluster # 4587 cluster # 4587 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4587#0 length = 558 sequences # 2

consensus_4587#1 length = 245 sequences # 1

consensusID : consensus_4587#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 558
fasta sequence

                              [ATTTTGAAGAGTCTGGTCTTTCTTCAGTCAGTGACGAGCACGTAAATCATTCCATATAAATAGTAAAAAAAGGAAATAATAAAGAAAGCAAGCTTCACCCAGCCTTCCTTCATAGCTCTGCTAAGCTCATCATGGTTCATGATCGTAGTCGGATCATACAATCCAGGACATGACATAACTGGACGATTTTTGTACCTGTATATATTATATGCCAACAATGGCACATTTAGCAAGACAGTCCCAATTTGNGCTGTGAACATAAACAATAATGTGAATGCAGCATGAAGCGCATATTCAGGGAGTACGAGCGGAATGCAATAAGTGGCTAAGCTGAGTGGTACCGGATTAAGTGATTTACACTGGTCAATAGGATTTTTGTAGTCTGTTCGGAGTTCATCAAATGAGATAACTTGAAAAATAACGAGGAATATAAGAGCAATCGTAAAAACTAATGCTAATATATAAGCAATAGCAACAAGACCGAATCCCATCCTTCCAGAGACCACGGAAAACACGCAGGCAAGGTAAATAAGTCAGTGCGTTTTCAAACCTGCCCGC]

[+] EMBL CD142793             [ATTTTGAAGAGTCTGGTCTTTCTTCAGTCAGTGACGAGCACGTAAATCATTCCATATAAATAGTAAAAAAAGGAAATAATAAAGAAAGCAAGCTTCACCCAGCCTTCCTTCATAGCTCTGCTAAGCTCATCATGGTTCATGATCGTAGTCGGATCATACAATCCAGGACATGACATAACTGGACGATTTTTGTACCTGTATATATTATATGCCAACAATGGCACATTTAGCAAGACAGTCCCAATTTGNGCTGTGAACATAAACAATAATGTGAATGCAGCATGAAGCGCATATTCAGGGAGTACGAGCGGA                                                                                                                                                                                                                                                      ]
[-] EMBL CD200966             [                                                                                                                                                                                                                                                                         ATAATGTGAATGCAGCATGAAGCGCATATTCAGGGAGTACGAGCTAAATGCAATAAGTGGCTAAGCTGAGTGGTACCGGATTAAGTGATTTACACTGGTCAATAGGATTTTTGTAGTCTGTTCGGAGTTCATCAAATGAGATAACTTGAAAAATAACGAGGAATATAAGAGCAATCGTAAAAACTAATGCTAATATATAAGCAATAGCAACAAGACCGAATCCCATCCTTCCAGAGACCACGGAAAACACGCAGGCAAGGTAAATAAGTCAGTGCGTTTTCAAACCTGCCCGC]




>consensus_4587#0
ATTTTGAAGAGTCTGGTCTTTCTTCAGTCAGTGACGAGCACGTAAATCATTCCATATAAA
TAGTAAAAAAAGGAAATAATAAAGAAAGCAAGCTTCACCCAGCCTTCCTTCATAGCTCTG
CTAAGCTCATCATGGTTCATGATCGTAGTCGGATCATACAATCCAGGACATGACATAACT
GGACGATTTTTGTACCTGTATATATTATATGCCAACAATGGCACATTTAGCAAGACAGTC
CCAATTTGNGCTGTGAACATAAACAATAATGTGAATGCAGCATGAAGCGCATATTCAGGG
AGTACGAGCGGAATGCAATAAGTGGCTAAGCTGAGTGGTACCGGATTAAGTGATTTACAC
TGGTCAATAGGATTTTTGTAGTCTGTTCGGAGTTCATCAAATGAGATAACTTGAAAAATA
ACGAGGAATATAAGAGCAATCGTAAAAACTAATGCTAATATATAAGCAATAGCAACAAGA
CCGAATCCCATCCTTCCAGAGACCACGGAAAACACGCAGGCAAGGTAAATAAGTCAGTGC
GTTTTCAAACCTGCCCGC

consensusID : consensus_4587#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence

                              [AAACAATAATGTGAATGCAGCATGAAGCGCATATTCAGGGAGTACGAGCGGATTAAGTGATTTACACTGGTCAATAGGATTTTTGTAGTCTGTTCGGAGTTCATCAAATGAGATAACTTGAAAAATAACGAGGAATATAAGAGCAATCGTAAAAACTAATGCTAATATATAAGCAATAGCAACAAGACCGAATCCCATCCTTCCAGAGACCACGGAAAACACGCGGGCAAGGTAAATAAGTCAGT]

[-] EMBL CD131837             [AAACAATAATGTGAATGCAGCATGAAGCGCATATTCAGGGAGTACGAGCGGATTAAGTGATTTACACTGGTCAATAGGATTTTTGTAGTCTGTTCGGAGTTCATCAAATGAGATAACTTGAAAAATAACGAGGAATATAAGAGCAATCGTAAAAACTAATGCTAATATATAAGCAATAGCAACAAGACCGAATCCCATCCTTCCAGAGACCACGGAAAACACGCGGGCAAGGTAAATAAGTCAGT]




>consensus_4587#1
AAACAATAATGTGAATGCAGCATGAAGCGCATATTCAGGGAGTACGAGCGGATTAAGTGA
TTTACACTGGTCAATAGGATTTTTGTAGTCTGTTCGGAGTTCATCAAATGAGATAACTTG
AAAAATAACGAGGAATATAAGAGCAATCGTAAAAACTAATGCTAATATATAAGCAATAGC
AACAAGACCGAATCCCATCCTTCCAGAGACCACGGAAAACACGCGGGCAAGGTAAATAAG
TCAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4587#0      ATTTTGAAGAGTCTGGTCTTTCTTCAGTCAGTGACGAGCACGTAAATCATTCCATATAAA 60
consensus_4587#1      ------------------------------------------------------------
                                                                                  

consensus_4587#0      TAGTAAAAAAAGGAAATAATAAAGAAAGCAAGCTTCACCCAGCCTTCCTTCATAGCTCTG 120
consensus_4587#1      ------------------------------------------------------------
                                                                                  

consensus_4587#0      CTAAGCTCATCATGGTTCATGATCGTAGTCGGATCATACAATCCAGGACATGACATAACT 180
consensus_4587#1      ------------------------------------------------------------
                                                                                  

consensus_4587#0      GGACGATTTTTGTACCTGTATATATTATATGCCAACAATGGCACATTTAGCAAGACAGTC 240
consensus_4587#1      ------------------------------------------------------------
                                                                                  

consensus_4587#0      CCAATTTGNGCTGTGAACATAAACAATAATGTGAATGCAGCATGAAGCGCATATTCAGGG 300
consensus_4587#1      --------------------AAACAATAATGTGAATGCAGCATGAAGCGCATATTCAGGG 40
                                          ****************************************

consensus_4587#0      AGTACGAGCGGAATGCAATAAGTGGCTAAGCTGAGTGGTACCGGATTAAGTGATTTACAC 360
consensus_4587#1      AGTACGAGCGGA---------------------------------TTAAGTGATTTACAC 67
                      ************                                 ***************

consensus_4587#0      TGGTCAATAGGATTTTTGTAGTCTGTTCGGAGTTCATCAAATGAGATAACTTGAAAAATA 420
consensus_4587#1      TGGTCAATAGGATTTTTGTAGTCTGTTCGGAGTTCATCAAATGAGATAACTTGAAAAATA 127
                      ************************************************************

consensus_4587#0      ACGAGGAATATAAGAGCAATCGTAAAAACTAATGCTAATATATAAGCAATAGCAACAAGA 480
consensus_4587#1      ACGAGGAATATAAGAGCAATCGTAAAAACTAATGCTAATATATAAGCAATAGCAACAAGA 187
                      ************************************************************

consensus_4587#0      CCGAATCCCATCCTTCCAGAGACCACGGAAAACACGCAGGCAAGGTAAATAAGTCAGTGC 540
consensus_4587#1      CCGAATCCCATCCTTCCAGAGACCACGGAAAACACGCGGGCAAGGTAAATAAGTCAGT-- 245
                      ************************************* ********************  

consensus_4587#0      GTTTTCAAACCTGCCCGC 558
consensus_4587#1      ------------------