These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4587#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 558 fasta sequence [ATTTTGAAGAGTCTGGTCTTTCTTCAGTCAGTGACGAGCACGTAAATCATTCCATATAAATAGTAAAAAAAGGAAATAATAAAGAAAGCAAGCTTCACCCAGCCTTCCTTCATAGCTCTGCTAAGCTCATCATGGTTCATGATCGTAGTCGGATCATACAATCCAGGACATGACATAACTGGACGATTTTTGTACCTGTATATATTATATGCCAACAATGGCACATTTAGCAAGACAGTCCCAATTTGNGCTGTGAACATAAACAATAATGTGAATGCAGCATGAAGCGCATATTCAGGGAGTACGAGCGGAATGCAATAAGTGGCTAAGCTGAGTGGTACCGGATTAAGTGATTTACACTGGTCAATAGGATTTTTGTAGTCTGTTCGGAGTTCATCAAATGAGATAACTTGAAAAATAACGAGGAATATAAGAGCAATCGTAAAAACTAATGCTAATATATAAGCAATAGCAACAAGACCGAATCCCATCCTTCCAGAGACCACGGAAAACACGCAGGCAAGGTAAATAAGTCAGTGCGTTTTCAAACCTGCCCGC] [+] EMBL CD142793 [ATTTTGAAGAGTCTGGTCTTTCTTCAGTCAGTGACGAGCACGTAAATCATTCCATATAAATAGTAAAAAAAGGAAATAATAAAGAAAGCAAGCTTCACCCAGCCTTCCTTCATAGCTCTGCTAAGCTCATCATGGTTCATGATCGTAGTCGGATCATACAATCCAGGACATGACATAACTGGACGATTTTTGTACCTGTATATATTATATGCCAACAATGGCACATTTAGCAAGACAGTCCCAATTTGNGCTGTGAACATAAACAATAATGTGAATGCAGCATGAAGCGCATATTCAGGGAGTACGAGCGGA ] [-] EMBL CD200966 [ ATAATGTGAATGCAGCATGAAGCGCATATTCAGGGAGTACGAGCTAAATGCAATAAGTGGCTAAGCTGAGTGGTACCGGATTAAGTGATTTACACTGGTCAATAGGATTTTTGTAGTCTGTTCGGAGTTCATCAAATGAGATAACTTGAAAAATAACGAGGAATATAAGAGCAATCGTAAAAACTAATGCTAATATATAAGCAATAGCAACAAGACCGAATCCCATCCTTCCAGAGACCACGGAAAACACGCAGGCAAGGTAAATAAGTCAGTGCGTTTTCAAACCTGCCCGC] consensusID : consensus_4587#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 245 fasta sequence [AAACAATAATGTGAATGCAGCATGAAGCGCATATTCAGGGAGTACGAGCGGATTAAGTGATTTACACTGGTCAATAGGATTTTTGTAGTCTGTTCGGAGTTCATCAAATGAGATAACTTGAAAAATAACGAGGAATATAAGAGCAATCGTAAAAACTAATGCTAATATATAAGCAATAGCAACAAGACCGAATCCCATCCTTCCAGAGACCACGGAAAACACGCGGGCAAGGTAAATAAGTCAGT] [-] EMBL CD131837 [AAACAATAATGTGAATGCAGCATGAAGCGCATATTCAGGGAGTACGAGCGGATTAAGTGATTTACACTGGTCAATAGGATTTTTGTAGTCTGTTCGGAGTTCATCAAATGAGATAACTTGAAAAATAACGAGGAATATAAGAGCAATCGTAAAAACTAATGCTAATATATAAGCAATAGCAACAAGACCGAATCCCATCCTTCCAGAGACCACGGAAAACACGCGGGCAAGGTAAATAAGTCAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4587#0 ATTTTGAAGAGTCTGGTCTTTCTTCAGTCAGTGACGAGCACGTAAATCATTCCATATAAA 60 consensus_4587#1 ------------------------------------------------------------ consensus_4587#0 TAGTAAAAAAAGGAAATAATAAAGAAAGCAAGCTTCACCCAGCCTTCCTTCATAGCTCTG 120 consensus_4587#1 ------------------------------------------------------------ consensus_4587#0 CTAAGCTCATCATGGTTCATGATCGTAGTCGGATCATACAATCCAGGACATGACATAACT 180 consensus_4587#1 ------------------------------------------------------------ consensus_4587#0 GGACGATTTTTGTACCTGTATATATTATATGCCAACAATGGCACATTTAGCAAGACAGTC 240 consensus_4587#1 ------------------------------------------------------------ consensus_4587#0 CCAATTTGNGCTGTGAACATAAACAATAATGTGAATGCAGCATGAAGCGCATATTCAGGG 300 consensus_4587#1 --------------------AAACAATAATGTGAATGCAGCATGAAGCGCATATTCAGGG 40 **************************************** consensus_4587#0 AGTACGAGCGGAATGCAATAAGTGGCTAAGCTGAGTGGTACCGGATTAAGTGATTTACAC 360 consensus_4587#1 AGTACGAGCGGA---------------------------------TTAAGTGATTTACAC 67 ************ *************** consensus_4587#0 TGGTCAATAGGATTTTTGTAGTCTGTTCGGAGTTCATCAAATGAGATAACTTGAAAAATA 420 consensus_4587#1 TGGTCAATAGGATTTTTGTAGTCTGTTCGGAGTTCATCAAATGAGATAACTTGAAAAATA 127 ************************************************************ consensus_4587#0 ACGAGGAATATAAGAGCAATCGTAAAAACTAATGCTAATATATAAGCAATAGCAACAAGA 480 consensus_4587#1 ACGAGGAATATAAGAGCAATCGTAAAAACTAATGCTAATATATAAGCAATAGCAACAAGA 187 ************************************************************ consensus_4587#0 CCGAATCCCATCCTTCCAGAGACCACGGAAAACACGCAGGCAAGGTAAATAAGTCAGTGC 540 consensus_4587#1 CCGAATCCCATCCTTCCAGAGACCACGGAAAACACGCGGGCAAGGTAAATAAGTCAGT-- 245 ************************************* ******************** consensus_4587#0 GTTTTCAAACCTGCCCGC 558 consensus_4587#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||