cluster # 4599

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Schistosoma mansoni
cluster # 4599 cluster # 4599 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4599#0 length = 698 sequences # 2

consensus_4599#1 length = 183 sequences # 1

consensusID : consensus_4599#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 698
fasta sequence

                              [AACGNATGTGCAAATAGTAGGTAATCAAGTAAGTAGTATGTTAATAGGTAGGTTAATAAAAAGCGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAAGTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTACCACACTCGCAAAACACAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATCAGATCAGTCTTCATTTCCGATTATTACAGTTACTATTATTGTTCATAGGTAGGTTAATAAAAAGCGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCAT]

[+] EMBL CD127558             [AACGNATGTGCAAATAGTAGGTAATCAAGTAAGTAGTATGTTAATAGGTAGGTTAATAAAAAGCGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAAGTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTACCACACTCGCAA                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD163011             [                                                                                                                                                                                                                        CATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAAGTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTACCACACTCGCAAAACACAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATCAGATCAGTCTTCATTTCCGATTATTACAGTTACTATTATTGTTCATAGGTAGGTTAATAAAAAGCGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCAT]




>consensus_4599#0
AACGNATGTGCAAATAGTAGGTAATCAAGTAAGTAGTATGTTAATAGGTAGGTTAATAAA
AAGCGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTT
AGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGC
TACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCATTC
CAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCA
ACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAAGT
ACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTACCACACTCGCAAA
ACACAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATCAG
ATCAGTCTTCATTTCCGATTATTACAGTTACTATTATTGTTCATAGGTAGGTTAATAAAA
AGCGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTA
GTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGCT
ACCAATGGATAAAACCGCTATACCAGTATAACATTCAT

consensusID : consensus_4599#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 183
fasta sequence

                              [CGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCTACTATTTGCACATNCGTTG]

[-] EMBL CD127524             [CGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCTACTATTTGCACATNCGTTG]




>consensus_4599#1
CGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGT
TGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGCTAC
CAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCTACTATTTGCACATNCG
TTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4599#0      AACGNATGTGCAAATAGTAGGTAATCAAGTAAGTAGTATGTTAATAGGTAGGTTAATAAA 60
consensus_4599#1      ------------------------------------------------------------
                                                                                  

consensus_4599#0      AAGCGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTT 120
consensus_4599#1      ---CGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTT 57
                         *********************************************************

consensus_4599#0      AGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGC 180
consensus_4599#1      AGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGC 117
                      ************************************************************

consensus_4599#0      TACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCATTC 240
consensus_4599#1      TACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCTACTATTTGCACAT 177
                      ********************************************** *     * **   

consensus_4599#0      CAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCA 300
consensus_4599#1      NCGTTG------------------------------------------------------ 183
                                                                                  

consensus_4599#0      ACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAAGT 360
consensus_4599#1      ------------------------------------------------------------
                                                                                  

consensus_4599#0      ACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTACCACACTCGCAAA 420
consensus_4599#1      ------------------------------------------------------------
                                                                                  

consensus_4599#0      ACACAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATCAG 480
consensus_4599#1      ------------------------------------------------------------
                                                                                  

consensus_4599#0      ATCAGTCTTCATTTCCGATTATTACAGTTACTATTATTGTTCATAGGTAGGTTAATAAAA 540
consensus_4599#1      ------------------------------------------------------------
                                                                                  

consensus_4599#0      AGCGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTA 600
consensus_4599#1      ------------------------------------------------------------
                                                                                  

consensus_4599#0      GTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGCT 660
consensus_4599#1      ------------------------------------------------------------
                                                                                  

consensus_4599#0      ACCAATGGATAAAACCGCTATACCAGTATAACATTCAT 698
consensus_4599#1      --------------------------------------