cluster # 460

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Schistosoma mansoni
cluster # 460 cluster # 460 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_460#0 length = 572 sequences # 1

consensus_460#1 length = 397 sequences # 1

consensusID : consensus_460#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence

                              [AAAGGAAAACATCAAGAAAACTTTAATGATAATCGATTAATGTGTATGTAAGTTGCCAAACCATACTAACTTGTTACCATAAGTGGATCAACCCAGAACATTTAGTTAGGAACTTCATTGAGCCTAACAAATATTTTGGTACTTATAACATATATTTAGACCAAAGATAATTGTGTTTACTTATAATTAACATTAGGACGAACTCCGCCTGGAGCCCCTCTGAGAACTACCGCAGGACTCAAGCCCGGATAAAGTAGGAGGGTTGAATATGGGGTTAGTGACCCCATCCCGTAGAAAACTAACTCGCTAAAAAAACACTAACCACAGAAAATAATTTAAGCCATTTGAACTGTGTCCTAGAAGTTAGTATGTCTTTATTTACAAGTGTTATGGCGCTTCATGGTAAAAGCCGAGTTCCTTCAGAAGTCACGAGGCTGATGCCCCTTCTGACAACCAGAGAAACCATTAATTTAGGTACATGGAATGTTTGTACAACGTGGAAGACCGGAAGAGCCATCCAAATTGCTGCAGAAATGAGAAAATACAACCTGNAGGTGCTTGAAATCAGTGAA]

[+] EMBL CD094894             [AAAGGAAAACATCAAGAAAACTTTAATGATAATCGATTAATGTGTATGTAAGTTGCCAAACCATACTAACTTGTTACCATAAGTGGATCAACCCAGAACATTTAGTTAGGAACTTCATTGAGCCTAACAAATATTTTGGTACTTATAACATATATTTAGACCAAAGATAATTGTGTTTACTTATAATTAACATTAGGACGAACTCCGCCTGGAGCCCCTCTGAGAACTACCGCAGGACTCAAGCCCGGATAAAGTAGGAGGGTTGAATATGGGGTTAGTGACCCCATCCCGTAGAAAACTAACTCGCTAAAAAAACACTAACCACAGAAAATAATTTAAGCCATTTGAACTGTGTCCTAGAAGTTAGTATGTCTTTATTTACAAGTGTTATGGCGCTTCATGGTAAAAGCCGAGTTCCTTCAGAAGTCACGAGGCTGATGCCCCTTCTGACAACCAGAGAAACCATTAATTTAGGTACATGGAATGTTTGTACAACGTGGAAGACCGGAAGAGCCATCCAAATTGCTGCAGAAATGAGAAAATACAACCTGNAGGTGCTTGAAATCAGTGAA]




>consensus_460#0
AAAGGAAAACATCAAGAAAACTTTAATGATAATCGATTAATGTGTATGTAAGTTGCCAAA
CCATACTAACTTGTTACCATAAGTGGATCAACCCAGAACATTTAGTTAGGAACTTCATTG
AGCCTAACAAATATTTTGGTACTTATAACATATATTTAGACCAAAGATAATTGTGTTTAC
TTATAATTAACATTAGGACGAACTCCGCCTGGAGCCCCTCTGAGAACTACCGCAGGACTC
AAGCCCGGATAAAGTAGGAGGGTTGAATATGGGGTTAGTGACCCCATCCCGTAGAAAACT
AACTCGCTAAAAAAACACTAACCACAGAAAATAATTTAAGCCATTTGAACTGTGTCCTAG
AAGTTAGTATGTCTTTATTTACAAGTGTTATGGCGCTTCATGGTAAAAGCCGAGTTCCTT
CAGAAGTCACGAGGCTGATGCCCCTTCTGACAACCAGAGAAACCATTAATTTAGGTACAT
GGAATGTTTGTACAACGTGGAAGACCGGAAGAGCCATCCAAATTGCTGCAGAAATGAGAA
AATACAACCTGNAGGTGCTTGAAATCAGTGAA

consensusID : consensus_460#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [TTCAACTGCCATGAGGTTTGCGAAAACCCTGATTTGCTGAGCTACGACAATATCATTTTTGAAAATGATTCGTACCGTTATTCTCTTCATTATCATTATTCAATGAGGATTCGGCTTAATCAGTCTCAACTAGCTTTTAATGACAGTTATCGAAACTTTCCCTTTCCATACTTTTTTAAACCGAAGTTCTCCTTTCGATTCTACGATACTCTAATCGATGATGTTTATATTTACTATTATGGTAAGCCAATAAATTTCGTTGAGCTCGTATTATGACTGAGTTTTCTTGATCAAATTTCTCTTCATGAATCAAAGTTGATTCAACTTCTTCAGTAAACCAGTTTGAGGTTCCTTGTTACATGAAAAACGTCTTTGAATATCTGTTCTCGTTCGAACT]

[+] EMBL CD147778             [TTCAACTGCCATGAGGTTTGCGAAAACCCTGATTTGCTGAGCTACGACAATATCATTTTTGAAAATGATTCGTACCGTTATTCTCTTCATTATCATTATTCAATGAGGATTCGGCTTAATCAGTCTCAACTAGCTTTTAATGACAGTTATCGAAACTTTCCCTTTCCATACTTTTTTAAACCGAAGTTCTCCTTTCGATTCTACGATACTCTAATCGATGATGTTTATATTTACTATTATGGTAAGCCAATAAATTTCGTTGAGCTCGTATTATGACTGAGTTTTCTTGATCAAATTTCTCTTCATGAATCAAAGTTGATTCAACTTCTTCAGTAAACCAGTTTGAGGTTCCTTGTTACATGAAAAACGTCTTTGAATATCTGTTCTCGTTCGAACT]




>consensus_460#1
TTCAACTGCCATGAGGTTTGCGAAAACCCTGATTTGCTGAGCTACGACAATATCATTTTT
GAAAATGATTCGTACCGTTATTCTCTTCATTATCATTATTCAATGAGGATTCGGCTTAAT
CAGTCTCAACTAGCTTTTAATGACAGTTATCGAAACTTTCCCTTTCCATACTTTTTTAAA
CCGAAGTTCTCCTTTCGATTCTACGATACTCTAATCGATGATGTTTATATTTACTATTAT
GGTAAGCCAATAAATTTCGTTGAGCTCGTATTATGACTGAGTTTTCTTGATCAAATTTCT
CTTCATGAATCAAAGTTGATTCAACTTCTTCAGTAAACCAGTTTGAGGTTCCTTGTTACA
TGAAAAACGTCTTTGAATATCTGTTCTCGTTCGAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_460#0      AAAGGAAAACATCAAGAAAACTTTAATGATAATCGATTAATGTGTATGTAAGTTGCCAAA 60
consensus_460#1      ------------------------------------------------------------
                                                                                 

consensus_460#0      CCATACTAACTTGTTACCATAAGTGGATCAAC--CCAGAACATTTAGTTAGGAACTTCAT 118
consensus_460#1      --------------------------TTCAACTGCCATGAGGTTTG--CGAAAACCCTGA 32
                                                *****  ***  *  ***       ***     

consensus_460#0      TGAGCCTAACAAATATTTTGGTACTTATAACATATATTTAGACCAAAGATAATTGTGTTT 178
consensus_460#1      TTTGCTGAGCTACGACAATATCATTTTTGAAAATGATTCGTACCGTTATTCTCTTCATTA 92
                     *  **  * * *  *   *   * ** * * *   ***   ***     *   *   ** 

consensus_460#0      AC-TTAT--AATTAACATTAGGACGAACTCCGCCTGGAGCCCCTCTGAGAACTACCGCAG 235
consensus_460#1      TCATTATTCAATGAGGATTCGGCTTAATCAGTCTCAACTAGCTTTTAATGACAGTTATCG 152
                      * ****  *** *  *** **   **     *        * * * *  **       *

consensus_460#0      GACTCAAGCCCGGATAAAGTAGGAGGGTTGAATATGGGGTTAGTGACCCCATCCCGTAGA 295
consensus_460#1      AAACTTTCCCTTTCCATACTTT-----TTTAAACCGAAGTTCTCCTTTCGATTCTACGAT 207
                      *      **     * * *       ** **   *  ***       * ** *      

consensus_460#0      AAACTAACTCGCTAAAAAAACACTAACCAC---AGAAAATAATTTAAGCCATTTGAACTG 352
consensus_460#1      ACTCTAATCGATGATGTTTATATTTACTATTATGGTAAGCCAATAAATTTCGTTGAGCT- 266
                     *  ****      *     * * * ** *     * **   * * **     **** ** 

consensus_460#0      TGTCCTAGAAGTTAGTATGTCTTTATTTACAAGTGTTATGGCGCTTCATGGTAAAAGCCG 412
consensus_460#1      CGTATTATGACTGAGTTT--TCTTGATCAAATTTCTCTTCATGAATCAAAGTTGA--TTC 322
                      **  **  * * *** *    **  * * *  * *  *   *  ***  **  *     

consensus_460#0      AGTTCCTTCAGAAGTCACGAGGCTGATGCCCCTTCTGACAACCAGAGAAACCATTAATTT 472
consensus_460#1      AACTTCTTCAGTAA--ACCAGTTTGAGGTTCCTTGTTACATGAAAAACGTCTTTGAATAT 380
                     *  * ****** *   ** **  *** *  **** * ***   * *    *  * *** *

consensus_460#0      AGGTACATGGAATGTTTGTACAACGTGGAAGACCGGAAGAGCCATCCAAATTGCTGCAGA 532
consensus_460#1      CTGTTCTCG-----TTCGAACT-------------------------------------- 397
                       ** *  *     ** * **                                       

consensus_460#0      AATGAGAAAATACAACCTGNAGGTGCTTGAAATCAGTGAA 572
consensus_460#1      ----------------------------------------