These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4600#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 433 fasta sequence [TTTAAATTATGGTACATCGATAAGAGATGGTTATGCGAGCAGTATTGGAGGTGTTGGAGTTGGAGCAGGAGGAGTTAGCAATGGAATTGGGGGCGGTAGGAAAAAAACCAAAAAGAAATTATCTTGTTTATCTTGTCTACATGGAACTGATAACGTTGAATCGTCAACAAAGTATGTTATAAATTAGATTAATTGAATTTGAGTTATTCTTAAAAAATATTAACGATATGAAGACATGGCTGTTTCGTCTTATTCTCAAAAGATTTTATGATTTGTAAACAAGCTTTAGATTATCAAAGCGAATGGATAGAATACCGGTTGATAGGTAATATACAATGATACAATTCGGATGAATGATAGTTCAGTTGCTAACTTAAGCCCCTGAATGAATTTAGATCAAAGACAAGATCATTAACCAGTAGAATAGGTTTTC] [+] EMBL CD185294 [TTTAAATTATGGTACATCGATAAGAGATGGTTATGCGAGCAGTATTGGAGGTGTTGGAGTTGGAGCAGGAGGAGTTAGCAATGGAATTGGGGGCGGTAGGAAAAAAACCAAAAAGAAATTATCTTGTTTATCTTGTCTACATGGAACTGATAACGTTGAATCGTCAACAAAGTATGTTATAAATTAGATTAATTGAATTTGAGTTATTCTTAAAAAATATTAACGATATGAAGACATGGCTGTTTCGTCTTATTCTCAAAAGATTTTATGATTTGTAAACAAGCTTTAGATTATCAAAGCGAATGGATAGAATACCGGTTGATAGGTAATATACAATGATACAATTCGGATGAATGATAGTTCAGTTGCTAACTTAAGCCCCTGAATGAATTTAGATCAAAGACAAGATCATTAACCAGTAGAATAGGTTTTC] [+] EMBL CD133910 [TTTAAATTATGGTACATCGATAAGAGATGGTTATGCGAGCAGTATTGGAGGTGTTGGAGTTGGAGCAGGAGGAGTTAGCAATGGAATTGGGGGCGGTAGGAAAAAAACCAAAAAGAAATTATCTTGTTTATCTTGTCTACATGGAACTGATAACGTTGAATCGTCAACAAAGTATGTTATAAATTAGATTAATTGAATTTGAGTTATTCTTAAAAAATATTAACGATATGAAGACATGGCTGTTTCGTCTTATTCTCAAAAGATTTTATGATTTGTAAACAAGCTTTAGATTATCAAAGCGAATGGATAGAATACCGGTTGATAGGTAATATACAATGATACAATTCGGATGAATGATAGTTCAGTTGCTAACTTAAGCCCCTAAATGAATTTAGATCAAAGACAAAATCATTAACCAGTAGAATAGGTTTTC] consensusID : consensus_4600#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [AGGGCACTGAAATTTTCTTTGGTACAAAGGTATCCAATCAGCCCATAAAGTAACACAAATTGATCGAATTCTAGGATCTGTGTACAACCATCCATCAGCAGAACAGTTGAAAAAAAAATATCATTAAAGTCAATCCAATCAATAAAAGAATGTCCAACAAAGCGAATACAATCGACAAACAGATAATATATGGATTTTGTTGTTGTTGTTGTTCTCGTTTATTCACTTCATGTCCATCTGATTTATTTAGGTCATCTATTAAGTTTAAGTCATCAGATGATGAATATAAATTTGTTGACGATTCAACGTTATCAGTTCCATGTAGACAAGATAAACAAGATAATTTCTTTTTGGTTTTTTTTCTACCGC] [+] EMBL CD200726 [AGGGCACTGAAATTTTCTTTGGTACAAAGGTATCCAATCAGCCCATAAAGTAACACAAATTGATCGAATTCTAGGATCTGTGTACAACCATCCATCAGCAGAACAGTTGAAAAAAAAATATCATTAAAGTCAATCCAATCAATAAAAGAATGTCCAACAAAGCGAATACAATCGACAAACAGATAATATATGGATTTTGTTGTTGTTGTTGTTCTCGTTTATTCACTTCATGTCCATCTGATTTATTTAGGTCATCTATTAAGTTTAAGTCATCAGATGATGAATATAAATTTGTTGACGATTCAACGTTATCAGTTCCATGTAGACAAGATAAACAAGATAATTTCTTTTTGGTTTTTTTTCTACCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4600#0 TTTAAATTATGGTA--CATCGATAAGAGATGGTTATGCGAGCAGTATTGGAGGTGTTGGA 58 consensus_4600#1 ---AGGGCACTGAAATTTTCTTTGGTACAAAGGTATCCAATCAGCCCATAAAGTAACACA 57 * * * * ** * * * * *** * * *** * ** * consensus_4600#0 GTTGGAGCAGGAGGAGTTAGCAATGGAATTGGGGGCGGTAGGAAAAAAACCAAAAAGAAA 118 consensus_4600#1 AATTGATCGAATTCTAGGATCTGTGTACAACCATCCATCAGCAGAACAGTTGAAAAAAAA 117 * ** * * * ** * * ** * ** * **** *** consensus_4600#0 TTATCTTGTTTATCTTGTCTACATGGAACTGATAACGTTGAATCGTCAACAAAGTATGTT 178 consensus_4600#1 ATATC--ATTAAAGTCA-----ATCCAATCAATAAAA--GAATGTCCAACAAAGCGA--- 165 **** ** * * ** ** **** **** ******** consensus_4600#0 ATAAATTAGATTAATTGAATTTGAGTTATTCTTAAAAAATATTAACGATATGAAGACATG 238 consensus_4600#1 ATACAATCGACAAACAGA-------TAATATATGGATTTTGTTGTTGTTGTT--GTTCTC 216 *** * * ** ** ** * ** * * * ** * * * * * consensus_4600#0 GCTGTTTCGTCTTATTCTCAAAAGATTT-TATGATTTGTAAACAAGCTTTAGATTATCAA 297 consensus_4600#1 GTTTATTCACTTCATGTCCATCTGATTTATTTAGGTCATCTATTAAGTTTAAGTCATCAG 276 * * *** * ** ** ***** * * * * * * **** * **** consensus_4600#0 AGCGAATGGATAGAATACCGGTTGATAGGTAATATACAATGATACAATTCGGATGAATGA 357 consensus_4600#1 A--TGATGAATATAA-ATTTGTTGACGATTCAACGTTATCAGTTCCATGTAGACAA--GA 331 * *** *** ** * ***** * * * * * ** ** * ** consensus_4600#0 TAGTTCAGTTGCTAACTTAAGCCCCTGAATGAATTTAGATCAAAGACAAGATCATTAACC 417 consensus_4600#1 TAAACAAGATAATTTCTT-----TTTGGTTTTTTTTCTACCGC----------------- 369 ** ** * * *** ** * *** * * consensus_4600#0 AGTAGAATAGGTTTTC 433 consensus_4600#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||