cluster # 4600

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Schistosoma mansoni
cluster # 4600 cluster # 4600 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4600#0 length = 433 sequences # 2

consensus_4600#1 length = 369 sequences # 1

consensusID : consensus_4600#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 433
fasta sequence

                              [TTTAAATTATGGTACATCGATAAGAGATGGTTATGCGAGCAGTATTGGAGGTGTTGGAGTTGGAGCAGGAGGAGTTAGCAATGGAATTGGGGGCGGTAGGAAAAAAACCAAAAAGAAATTATCTTGTTTATCTTGTCTACATGGAACTGATAACGTTGAATCGTCAACAAAGTATGTTATAAATTAGATTAATTGAATTTGAGTTATTCTTAAAAAATATTAACGATATGAAGACATGGCTGTTTCGTCTTATTCTCAAAAGATTTTATGATTTGTAAACAAGCTTTAGATTATCAAAGCGAATGGATAGAATACCGGTTGATAGGTAATATACAATGATACAATTCGGATGAATGATAGTTCAGTTGCTAACTTAAGCCCCTGAATGAATTTAGATCAAAGACAAGATCATTAACCAGTAGAATAGGTTTTC]

[+] EMBL CD185294             [TTTAAATTATGGTACATCGATAAGAGATGGTTATGCGAGCAGTATTGGAGGTGTTGGAGTTGGAGCAGGAGGAGTTAGCAATGGAATTGGGGGCGGTAGGAAAAAAACCAAAAAGAAATTATCTTGTTTATCTTGTCTACATGGAACTGATAACGTTGAATCGTCAACAAAGTATGTTATAAATTAGATTAATTGAATTTGAGTTATTCTTAAAAAATATTAACGATATGAAGACATGGCTGTTTCGTCTTATTCTCAAAAGATTTTATGATTTGTAAACAAGCTTTAGATTATCAAAGCGAATGGATAGAATACCGGTTGATAGGTAATATACAATGATACAATTCGGATGAATGATAGTTCAGTTGCTAACTTAAGCCCCTGAATGAATTTAGATCAAAGACAAGATCATTAACCAGTAGAATAGGTTTTC]
[+] EMBL CD133910             [TTTAAATTATGGTACATCGATAAGAGATGGTTATGCGAGCAGTATTGGAGGTGTTGGAGTTGGAGCAGGAGGAGTTAGCAATGGAATTGGGGGCGGTAGGAAAAAAACCAAAAAGAAATTATCTTGTTTATCTTGTCTACATGGAACTGATAACGTTGAATCGTCAACAAAGTATGTTATAAATTAGATTAATTGAATTTGAGTTATTCTTAAAAAATATTAACGATATGAAGACATGGCTGTTTCGTCTTATTCTCAAAAGATTTTATGATTTGTAAACAAGCTTTAGATTATCAAAGCGAATGGATAGAATACCGGTTGATAGGTAATATACAATGATACAATTCGGATGAATGATAGTTCAGTTGCTAACTTAAGCCCCTAAATGAATTTAGATCAAAGACAAAATCATTAACCAGTAGAATAGGTTTTC]




>consensus_4600#0
TTTAAATTATGGTACATCGATAAGAGATGGTTATGCGAGCAGTATTGGAGGTGTTGGAGT
TGGAGCAGGAGGAGTTAGCAATGGAATTGGGGGCGGTAGGAAAAAAACCAAAAAGAAATT
ATCTTGTTTATCTTGTCTACATGGAACTGATAACGTTGAATCGTCAACAAAGTATGTTAT
AAATTAGATTAATTGAATTTGAGTTATTCTTAAAAAATATTAACGATATGAAGACATGGC
TGTTTCGTCTTATTCTCAAAAGATTTTATGATTTGTAAACAAGCTTTAGATTATCAAAGC
GAATGGATAGAATACCGGTTGATAGGTAATATACAATGATACAATTCGGATGAATGATAG
TTCAGTTGCTAACTTAAGCCCCTGAATGAATTTAGATCAAAGACAAGATCATTAACCAGT
AGAATAGGTTTTC

consensusID : consensus_4600#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [AGGGCACTGAAATTTTCTTTGGTACAAAGGTATCCAATCAGCCCATAAAGTAACACAAATTGATCGAATTCTAGGATCTGTGTACAACCATCCATCAGCAGAACAGTTGAAAAAAAAATATCATTAAAGTCAATCCAATCAATAAAAGAATGTCCAACAAAGCGAATACAATCGACAAACAGATAATATATGGATTTTGTTGTTGTTGTTGTTCTCGTTTATTCACTTCATGTCCATCTGATTTATTTAGGTCATCTATTAAGTTTAAGTCATCAGATGATGAATATAAATTTGTTGACGATTCAACGTTATCAGTTCCATGTAGACAAGATAAACAAGATAATTTCTTTTTGGTTTTTTTTCTACCGC]

[+] EMBL CD200726             [AGGGCACTGAAATTTTCTTTGGTACAAAGGTATCCAATCAGCCCATAAAGTAACACAAATTGATCGAATTCTAGGATCTGTGTACAACCATCCATCAGCAGAACAGTTGAAAAAAAAATATCATTAAAGTCAATCCAATCAATAAAAGAATGTCCAACAAAGCGAATACAATCGACAAACAGATAATATATGGATTTTGTTGTTGTTGTTGTTCTCGTTTATTCACTTCATGTCCATCTGATTTATTTAGGTCATCTATTAAGTTTAAGTCATCAGATGATGAATATAAATTTGTTGACGATTCAACGTTATCAGTTCCATGTAGACAAGATAAACAAGATAATTTCTTTTTGGTTTTTTTTCTACCGC]




>consensus_4600#1
AGGGCACTGAAATTTTCTTTGGTACAAAGGTATCCAATCAGCCCATAAAGTAACACAAAT
TGATCGAATTCTAGGATCTGTGTACAACCATCCATCAGCAGAACAGTTGAAAAAAAAATA
TCATTAAAGTCAATCCAATCAATAAAAGAATGTCCAACAAAGCGAATACAATCGACAAAC
AGATAATATATGGATTTTGTTGTTGTTGTTGTTCTCGTTTATTCACTTCATGTCCATCTG
ATTTATTTAGGTCATCTATTAAGTTTAAGTCATCAGATGATGAATATAAATTTGTTGACG
ATTCAACGTTATCAGTTCCATGTAGACAAGATAAACAAGATAATTTCTTTTTGGTTTTTT
TTCTACCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4600#0      TTTAAATTATGGTA--CATCGATAAGAGATGGTTATGCGAGCAGTATTGGAGGTGTTGGA 58
consensus_4600#1      ---AGGGCACTGAAATTTTCTTTGGTACAAAGGTATCCAATCAGCCCATAAAGTAACACA 57
                         *    *  * *    **  *   * *  * *** * * ***      * **     *

consensus_4600#0      GTTGGAGCAGGAGGAGTTAGCAATGGAATTGGGGGCGGTAGGAAAAAAACCAAAAAGAAA 118
consensus_4600#1      AATTGATCGAATTCTAGGATCTGTGTACAACCATCCATCAGCAGAACAGTTGAAAAAAAA 117
                        * ** *          * *  ** *        *   ** * ** *    **** ***

consensus_4600#0      TTATCTTGTTTATCTTGTCTACATGGAACTGATAACGTTGAATCGTCAACAAAGTATGTT 178
consensus_4600#1      ATATC--ATTAAAGTCA-----ATCCAATCAATAAAA--GAATGTCCAACAAAGCGA--- 165
                       ****   ** *  *       **  **   ****    ****   ********      

consensus_4600#0      ATAAATTAGATTAATTGAATTTGAGTTATTCTTAAAAAATATTAACGATATGAAGACATG 238
consensus_4600#1      ATACAATCGACAAACAGA-------TAATATATGGATTTTGTTGTTGTTGTT--GTTCTC 216
                      *** * * **  **  **       * **   *  *   * **   * * *   *   * 

consensus_4600#0      GCTGTTTCGTCTTATTCTCAAAAGATTT-TATGATTTGTAAACAAGCTTTAGATTATCAA 297
consensus_4600#1      GTTTATTCACTTCATGTCCATCTGATTTATTTAGGTCATCTATTAAGTTTAAGTCATCAG 276
                      * *  ***   * **   **   ***** * *   *  *  *  *  ****  * **** 

consensus_4600#0      AGCGAATGGATAGAATACCGGTTGATAGGTAATATACAATGATACAATTCGGATGAATGA 357
consensus_4600#1      A--TGATGAATATAA-ATTTGTTGACGATTCAACGTTATCAGTTCCATGTAGACAA--GA 331
                      *    *** *** ** *   *****    * *     *    * * **   **  *  **

consensus_4600#0      TAGTTCAGTTGCTAACTTAAGCCCCTGAATGAATTTAGATCAAAGACAAGATCATTAACC 417
consensus_4600#1      TAAACAAGATAATTTCTT-----TTTGGTTTTTTTTCTACCGC----------------- 369
                      **    ** *  *  ***       **  *   ***  * *                   

consensus_4600#0      AGTAGAATAGGTTTTC 433
consensus_4600#1      ----------------