cluster # 4602

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Schistosoma mansoni
cluster # 4602 cluster # 4602 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4602#0 length = 646 sequences # 2

consensus_4602#1 length = 166 sequences # 1

consensusID : consensus_4602#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 646
fasta sequence

                              [CCTCGAGGCCANAATTCGGCACGAGGATTTTAACAGAAACTGTAATGACTGAAAACTATGAGTACATGCCGCGAGCGAGGCCGGACCCTGATGTCGAATATCCTTTGACAATTAAGTATTGTGGTGAATGCACTATGCCTCTGGAGTATTGTGAATTTTCACCATTTCCTGATAAGTGTCGAGCATGGCTAGAGAAAAATTTACCTGAAGAGTTTGAACGACTTAATACCGATGATATGGATTCAAACCAAACTGAGGCAGCGCCTAAAGGACGTCAAGTTAGGGGTGGAAAGGGAGGACCTAAAAAACCAGTAAAGCAGCAAATAGCAGTATTTAAAACTTCCAGAGGCAAGAAAAAATATACGACTAGTGTCACTGGATTGTCCACATTTGGGATTGATCTGAAAGCAGCTTCGAAGATATTTGGTCACAAATTCGCAACCGGTAGTTCAGTAACGGGTAATGGTGATGAAATTGTAATTCAAGGAGATGTAAAAGACGAGCTAATTAATGTATTAATAGAAAAATGGCCAGAAATTGATAAAGACGTAATAGAGAATCTTGGGGAAATGAAACGATAAACTTAATTCGTTATTTTGGTGTACAGTGTTGTAATTAATCTTCTTGCTTTGAAAATACAACCCTT]

[+] EMBL CD080218             [CCTCGAGGCCANAATTCGGCACGAGGATTTTAACAGAAACTGTAATGACTGAAAACTATGAGTACATGCCGCGAGCGAGGCCGGACCCTGATGTCGAATATCCTTTGACAATTAAGTATTGTGGTGAATGCACTATGCCTCTGGAGTATTGTGAATTTTCACCATTTCCTGATAAGTGTCGAGCATGGCTAGAGAAAAATTTACCTGAAGAGTTTGAACGACTTAATACCGATGATATGGATTCAAACCAAACTGAGGCAGCGCCTAAAGGACGTCAAGTTAGGGGTGGAAAGGGAGGACCTAAAAAACCAGTAAAGCAGCAAATAGCAGTATTTAAAACTTCCAGAGGCAAGAAAAAATATACGACTAGTGTCACTGGATTGTCCACATTTGGGATTGATCTGAAAGCAGCTTCGAAGATATTTGGTCACAAATTCGCAACCGGTAGTTCAGTAACGGGTAATGGTGATGAAATTGTAATTCAAGGAGATGTAAAAGACGAGCTAATTAATGTATTAATAGAAAAATGGCCAGAAATTGATAAAGACGTAATAGAGAATCTTGGGGAAATGAAACGATAAACTTAATTCGTTATTTTGGTGTACAGTGTTGTAATTAATCTTCTTGCTTTGAAAATACAACCCTT]
[+] EMBL CD079839             [                                                                                                                                                                                                                   GTCTGAACGACTTAATACCGATGATATGGATTCAAACCAAACTGAGGCAGCGCCTAAAGGACGTCAAGTTAGGGGTGGAAAGGGAGGACCTAAAAAACCAGTAAAGCAGCAAATAGCAGTATTTAAAACTTCCAGAGGCAAGAAAAAATATACGACTAGTGTCACTGGATTGTCCACATTTGGGATTGATCTGAAAGCAGCTTCGAAGATATTTGGTCACAAATTCGCAACCGGTAGTTCAGTAACGGGTAATGGTGATGAAATTGTAATTCAAGGAGATGTAAAAGACGAGCTAATTAATGTATTAATAGAAAAATGGCCAGAAATTGATAAAGACGTAATAGAGAATCTTGGGGAAATGAAACGATAAACTTAATTCGTTATTTTGGTGTACAGTGTTGTAATTAATCTTCTTGCTTTGAAAATACAACCCTT]




>consensus_4602#0
CCTCGAGGCCANAATTCGGCACGAGGATTTTAACAGAAACTGTAATGACTGAAAACTATG
AGTACATGCCGCGAGCGAGGCCGGACCCTGATGTCGAATATCCTTTGACAATTAAGTATT
GTGGTGAATGCACTATGCCTCTGGAGTATTGTGAATTTTCACCATTTCCTGATAAGTGTC
GAGCATGGCTAGAGAAAAATTTACCTGAAGAGTTTGAACGACTTAATACCGATGATATGG
ATTCAAACCAAACTGAGGCAGCGCCTAAAGGACGTCAAGTTAGGGGTGGAAAGGGAGGAC
CTAAAAAACCAGTAAAGCAGCAAATAGCAGTATTTAAAACTTCCAGAGGCAAGAAAAAAT
ATACGACTAGTGTCACTGGATTGTCCACATTTGGGATTGATCTGAAAGCAGCTTCGAAGA
TATTTGGTCACAAATTCGCAACCGGTAGTTCAGTAACGGGTAATGGTGATGAAATTGTAA
TTCAAGGAGATGTAAAAGACGAGCTAATTAATGTATTAATAGAAAAATGGCCAGAAATTG
ATAAAGACGTAATAGAGAATCTTGGGGAAATGAAACGATAAACTTAATTCGTTATTTTGG
TGTACAGTGTTGTAATTAATCTTCTTGCTTTGAAAATACAACCCTT

consensusID : consensus_4602#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 166
fasta sequence

                              [TTCAAAGTAATAATTACGTTTTTGGCTGTCAATCGATCGACTTCCAACGTCTAAATCAAAAGCACTTATACCAGACGCTAATTTCATATTTTTTGTTGTTTTAGTTCAGTTTTATTTTAACAGAAACTGTAATGACTGAAAACTATGAGTACATGCCGCGAGCGAG]

[+] EMBL CD192503             [TTCAAAGTAATAATTACGTTTTTGGCTGTCAATCGATCGACTTCCAACGTCTAAATCAAAAGCACTTATACCAGACGCTAATTTCATATTTTTTGTTGTTTTAGTTCAGTTTTATTTTAACAGAAACTGTAATGACTGAAAACTATGAGTACATGCCGCGAGCGAG]




>consensus_4602#1
TTCAAAGTAATAATTACGTTTTTGGCTGTCAATCGATCGACTTCCAACGTCTAAATCAAA
AGCACTTATACCAGACGCTAATTTCATATTTTTTGTTGTTTTAGTTCAGTTTTATTTTAA
CAGAAACTGTAATGACTGAAAACTATGAGTACATGCCGCGAGCGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4602#0      CCTCGAGGCCANAATTCGGCACGAGGATTTTAACAGA---AACTGTAATGACTGAAAACT 57
consensus_4602#1      -TTCAAAGTAATAATTACGTTTTTGGCTGTCAATCGATCGACTTCCAACGTCT--AAATC 57
                        ** * *  * ****  *     ** * * **  **   *  *  ** * **  ***  

consensus_4602#0      ATGAGTACATGCCGCGAGCGAGGCCGGACCCTGATGTCGAATATCCTTTGACAATTAAGT 117
consensus_4602#1      AAAAGCACTTAT----------ACCAGACGCTAATTTC--ATATTTTTTGTTGTTTTAGT 105
                      *  ** ** *             ** *** ** ** **  ****  ****    ** ***

consensus_4602#0      ATTGTGGTGAATGCACTATGCCTCTGGAGTATTGTGAATTTTCACCATTTCCTGATAAGT 177
consensus_4602#1      TCAGTTTTATTTTAACAGAAACTGTAATG-ACTGAAAACTATGAGTACATGCCG-CGAGC 163
                         **  *   *  **     ** *   * * **  ** * * *  *  * * *   ** 

consensus_4602#0      GTCGAGCATGGCTAGAGAAAAATTTACCTGAAGAGTTTGAACGACTTAATACCGATGATA 237
consensus_4602#1      GAG--------------------------------------------------------- 166
                      *                                                           

consensus_4602#0      TGGATTCAAACCAAACTGAGGCAGCGCCTAAAGGACGTCAAGTTAGGGGTGGAAAGGGAG 297
consensus_4602#1      ------------------------------------------------------------
                                                                                  

consensus_4602#0      GACCTAAAAAACCAGTAAAGCAGCAAATAGCAGTATTTAAAACTTCCAGAGGCAAGAAAA 357
consensus_4602#1      ------------------------------------------------------------
                                                                                  

consensus_4602#0      AATATACGACTAGTGTCACTGGATTGTCCACATTTGGGATTGATCTGAAAGCAGCTTCGA 417
consensus_4602#1      ------------------------------------------------------------
                                                                                  

consensus_4602#0      AGATATTTGGTCACAAATTCGCAACCGGTAGTTCAGTAACGGGTAATGGTGATGAAATTG 477
consensus_4602#1      ------------------------------------------------------------
                                                                                  

consensus_4602#0      TAATTCAAGGAGATGTAAAAGACGAGCTAATTAATGTATTAATAGAAAAATGGCCAGAAA 537
consensus_4602#1      ------------------------------------------------------------
                                                                                  

consensus_4602#0      TTGATAAAGACGTAATAGAGAATCTTGGGGAAATGAAACGATAAACTTAATTCGTTATTT 597
consensus_4602#1      ------------------------------------------------------------
                                                                                  

consensus_4602#0      TGGTGTACAGTGTTGTAATTAATCTTCTTGCTTTGAAAATACAACCCTT 646
consensus_4602#1      -------------------------------------------------