cluster # 4606

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Schistosoma mansoni
cluster # 4606 cluster # 4606 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4606#0 length = 664 sequences # 1

consensus_4606#1 length = 262 sequences # 1
consensus_4606#2 length = 254 sequences # 1

consensusID : consensus_4606#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [TATGCGGGCAGCGTTTTGGCTTAGATAATCTATCAAACTTGTTTTTCTGAAATGAAAACACCAAGTCACTAAACTACCCAGTTATACTGTACTTCACATTGGGCTAGTGTTCTTTTCAGCTCGCCCCAGTGTAACTTAACATCAGACGTACGATAAATGCCGAATTCTATTCCCTTATCTATAGCGATCAATCGCTAGGTATCATGAAAACACGAATCGTCGATACATATAAACCAGATAGCTGGATTAAAACTCACGGAACAAGCTAATACACCCGTGTCTGTGGGGCAGAACATTTTGTTTGTATCAGGCTCTTTATGGATGAGAATAAGGCAATCAGTGATATTGAGGTTGTTCTCCTACACTCACCATTCAGACTCATGTTTCTAATTTTTGTGCTGGATTAACTATTCTACTAATACAACCTTTAACATGCTAACTCGGACTTTTAAATGAACACTGTGTGGCAGGCATCGGATGATGAAAAAAAACCGACTGTAAAGGATATGGTTGTTATTTTACTCAACACTCTACTCTCTATATGCACTCTCTGTTCCTCCTCATTCCAACCTTGACTTCCCCCCTTCATTCGAACCTACTCCACCTTGATAAATATAACAACTCATTGGTCTTTATTACTGCATTCTCTCTCATGGAGCCNNCT]

[+] EMBL CD086828             [TATGCGGGCAGCGTTTTGGCTTAGATAATCTATCAAACTTGTTTTTCTGAAATGAAAACACCAAGTCACTAAACTACCCAGTTATACTGTACTTCACATTGGGCTAGTGTTCTTTTCAGCTCGCCCCAGTGTAACTTAACATCAGACGTACGATAAATGCCGAATTCTATTCCCTTATCTATAGCGATCAATCGCTAGGTATCATGAAAACACGAATCGTCGATACATATAAACCAGATAGCTGGATTAAAACTCACGGAACAAGCTAATACACCCGTGTCTGTGGGGCAGAACATTTTGTTTGTATCAGGCTCTTTATGGATGAGAATAAGGCAATCAGTGATATTGAGGTTGTTCTCCTACACTCACCATTCAGACTCATGTTTCTAATTTTTGTGCTGGATTAACTATTCTACTAATACAACCTTTAACATGCTAACTCGGACTTTTAAATGAACACTGTGTGGCAGGCATCGGATGATGAAAAAAAACCGACTGTAAAGGATATGGTTGTTATTTTACTCAACACTCTACTCTCTATATGCACTCTCTGTTCCTCCTCATTCCAACCTTGACTTCCCCCCTTCATTCGAACCTACTCCACCTTGATAAATATAACAACTCATTGGTCTTTATTACTGCATTCTCTCTCATGGAGCCNNCT]




>consensus_4606#0
TATGCGGGCAGCGTTTTGGCTTAGATAATCTATCAAACTTGTTTTTCTGAAATGAAAACA
CCAAGTCACTAAACTACCCAGTTATACTGTACTTCACATTGGGCTAGTGTTCTTTTCAGC
TCGCCCCAGTGTAACTTAACATCAGACGTACGATAAATGCCGAATTCTATTCCCTTATCT
ATAGCGATCAATCGCTAGGTATCATGAAAACACGAATCGTCGATACATATAAACCAGATA
GCTGGATTAAAACTCACGGAACAAGCTAATACACCCGTGTCTGTGGGGCAGAACATTTTG
TTTGTATCAGGCTCTTTATGGATGAGAATAAGGCAATCAGTGATATTGAGGTTGTTCTCC
TACACTCACCATTCAGACTCATGTTTCTAATTTTTGTGCTGGATTAACTATTCTACTAAT
ACAACCTTTAACATGCTAACTCGGACTTTTAAATGAACACTGTGTGGCAGGCATCGGATG
ATGAAAAAAAACCGACTGTAAAGGATATGGTTGTTATTTTACTCAACACTCTACTCTCTA
TATGCACTCTCTGTTCCTCCTCATTCCAACCTTGACTTCCCCCCTTCATTCGAACCTACT
CCACCTTGATAAATATAACAACTCATTGGTCTTTATTACTGCATTCTCTCTCATGGAGCC
NNCT

consensusID : consensus_4606#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 262
fasta sequence

                              [TTCGTCGAGCTTGTTCCTGATGTCAGAAGTTACATAGCTTCACCCTCGGAGCAAGATTCTGAAGAGAAAAAAAGAGAAACCGAGGAGCAGCAAGGCATTTGGATATGAGCGATAATCAATGCTTAACATTTATTAGTGGAACAGATGGAGAGTGAAGTGTGATTAGGGGCTCCAGAGGAGAGAAGGCAGTAATAAAGAACAATGAGTTGTGATATTTATCAAGGTGGAGTAGGTTCCAATGAAGGAGGGAAGTCAAGGTTGG]

[+] EMBL CD148091             [TTCGTCGAGCTTGTTCCTGATGTCAGAAGTTACATAGCTTCACCCTCGGAGCAAGATTCTGAAGAGAAAAAAAGAGAAACCGAGGAGCAGCAAGGCATTTGGATATGAGCGATAATCAATGCTTAACATTTATTAGTGGAACAGATGGAGAGTGAAGTGTGATTAGGGGCTCCAGAGGAGAGAAGGCAGTAATAAAGAACAATGAGTTGTGATATTTATCAAGGTGGAGTAGGTTCCAATGAAGGAGGGAAGTCAAGGTTGG]




>consensus_4606#1
TTCGTCGAGCTTGTTCCTGATGTCAGAAGTTACATAGCTTCACCCTCGGAGCAAGATTCT
GAAGAGAAAAAAAGAGAAACCGAGGAGCAGCAAGGCATTTGGATATGAGCGATAATCAAT
GCTTAACATTTATTAGTGGAACAGATGGAGAGTGAAGTGTGATTAGGGGCTCCAGAGGAG
AGAAGGCAGTAATAAAGAACAATGAGTTGTGATATTTATCAAGGTGGAGTAGGTTCCAAT
GAAGGAGGGAAGTCAAGGTTGG

consensusID : consensus_4606#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 254
fasta sequence

                              [TTCATTGGAACCTACTCCACCTTGATAAATATCACAACTCATTGTTTTTTATTACTGCCTTCTCTCCTCTGGAGCCCCTAATCGCAGTTCACTCTTGCAACCTCCATCTGTTCCACTAATAAATGTTAAGCATTGATTATCGCTCATATCCAAATGCCTTGCTGCTCCTCGGTTTCTCTTTTGTTTTTTCTCTTCAGAATCTTGCTCTGAGGGTGAAGCTATGTAACTTCGGACATCTGGAACAAGCTCGACGA]

[+] EMBL CD148039             [TTCATTGGAACCTACTCCACCTTGATAAATATCACAACTCATTGTTTTTTATTACTGCCTTCTCTCCTCTGGAGCCCCTAATCGCAGTTCACTCTTGCAACCTCCATCTGTTCCACTAATAAATGTTAAGCATTGATTATCGCTCATATCCAAATGCCTTGCTGCTCCTCGGTTTCTCTTTTGTTTTTTCTCTTCAGAATCTTGCTCTGAGGGTGAAGCTATGTAACTTCGGACATCTGGAACAAGCTCGACGA]




>consensus_4606#2
TTCATTGGAACCTACTCCACCTTGATAAATATCACAACTCATTGTTTTTTATTACTGCCT
TCTCTCCTCTGGAGCCCCTAATCGCAGTTCACTCTTGCAACCTCCATCTGTTCCACTAAT
AAATGTTAAGCATTGATTATCGCTCATATCCAAATGCCTTGCTGCTCCTCGGTTTCTCTT
TTGTTTTTTCTCTTCAGAATCTTGCTCTGAGGGTGAAGCTATGTAACTTCGGACATCTGG
AACAAGCTCGACGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4606#0      TATGCGGGCAGCGTTTTGGCTTAGATAATCTATCAAACTTGTTTTTCTGAAATGAAAACA 60
consensus_4606#2      ------------------------------------------------------------
consensus_4606#1      ------------------------------------------------------------
                                                                                  

consensus_4606#0      CCAAGTCACTAAACTACCCAGTTATACTGTACTTCACATTGGGCTAGTGTTCTTTTCAGC 120
consensus_4606#2      -------------------------------------------------TTCATTGGAAC 11
consensus_4606#1      -------------------------------------------------TTCGTCGAGCT 11
                                                                       *** *      

consensus_4606#0      TCGCCCCAGTGTAACTTAACATCA-GACGTACGATAAATGCCGAATTCTATTCCCTTATC 179
consensus_4606#2      CTACTCCACCTTGA-TAAATATCACAACTCATTGTTTTTTATTACTGCC-TTCTCTCCTC 69
consensus_4606#1      TGTTCCTGATGTCAGAAGTTACATAGCTTCACCCTCGGAGCAAGATTCTGAAGAGAAAAA 71
                           *     * *      *         *   *          * *            

consensus_4606#0      TATAGCGATCAA----TCGCTAGGTATC---ATGAAAAC----ACGAATCGTCGATACAT 228
consensus_4606#2      TGGAGCCCCTAA----TCGCAGTTCACT---CTTGCAAC----CTCCATCTGTTCCACTA 118
consensus_4606#1      AAGAGAAACCGAGGAGCAGCAAGGCATTTGGATATGAGCGATAATCAATGCTTAACATTT 131
                         **      *      **     *      *   * *        **       *   

consensus_4606#0      ATAAACCAGATAGCTGGATTAAAACTCACG---GAACAAGCTAATACACCCGTGTCTGTG 285
consensus_4606#2      ATAAATGTTAAGCATTGATTATCGCTCATATCCAAATGCCTTGCTGCTCCTCGGTTTCTC 178
consensus_4606#1      ATTAGTGGAACAGATGGAGAGTGAAGTGTGATTAGGGGCTCCAGAGGAGAGAAGGCAGTA 191
                      ** *     *    * **                                   *    * 

consensus_4606#0      GGGCAGAACATTTTGTTTGTATCAGGCTCTTTATGGATGAGAATAAGGC-AATCAGTGAT 344
consensus_4606#2      TTTTGTTTTTTCTCTTCAGAATCTTGCTC--TGAGGGTGAAGCTATG-T-AACTTCGGAC 234
consensus_4606#1      ATAAAGAACAATGAGTTGTGATATTTATCAAGGTGGAGTAGGTTCCAATGAAGGAGGGAA 251
                                     *    **     **     **   *   *      **     ** 

consensus_4606#0      ATTGAGGTTGTTCTCCTACACTCACCATTCAGACTCATGTTTCTAATTTTTGTGCTGGAT 404
consensus_4606#2      ATCTGGAACAAGCTCGACGA---------------------------------------- 254
consensus_4606#1      GTCAAGGTTGG------------------------------------------------- 262
                       *   *                                                      

consensus_4606#0      TAACTATTCTACTAATACAACCTTTAACATGCTAACTCGGACTTTTAAATGAACACTGTG 464
consensus_4606#2      ------------------------------------------------------------
consensus_4606#1      ------------------------------------------------------------
                                                                                  

consensus_4606#0      TGGCAGGCATCGGATGATGAAAAAAAACCGACTGTAAAGGATATGGTTGTTATTTTACTC 524
consensus_4606#2      ------------------------------------------------------------
consensus_4606#1      ------------------------------------------------------------
                                                                                  

consensus_4606#0      AACACTCTACTCTCTATATGCACTCTCTGTTCCTCCTCATTCCAACCTTGACTTCCCCCC 584
consensus_4606#2      ------------------------------------------------------------
consensus_4606#1      ------------------------------------------------------------
                                                                                  

consensus_4606#0      TTCATTCGAACCTACTCCACCTTGATAAATATAACAACTCATTGGTCTTTATTACTGCAT 644
consensus_4606#2      ------------------------------------------------------------
consensus_4606#1      ------------------------------------------------------------
                                                                                  

consensus_4606#0      TCTCTCTCATGGAGCCNNCT 664
consensus_4606#2      --------------------
consensus_4606#1      --------------------