cluster # 4607

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Schistosoma mansoni
cluster # 4607 cluster # 4607 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4607#0 length = 354 sequences # 2

consensus_4607#1 length = 286 sequences # 1

consensusID : consensus_4607#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 354
fasta sequence

                              [AACCTGCACACTAAGGCAGAGAAGCTCCACGAACCTTTCCGTAGTCTCCTTTGCCAATAACACGTTGAATTTTGAAGTTTTCAGCATTAACACGATTGTTCGGATTGACTGTCTTCTGACATATCTCGACAGTTTCTTGAGTTGTTATCTCTTCTTTGTTCTCCGAACAAATTAACTCCTTTGACAATTGATCTGAAGACTTGGTATTATTTTTCCCCGGAGACGATAGGTTGAGTCTGTCTGTTTCATCGTCTCTACACTCATCATCATTTTCAAGTTCAGCAGACAAAAAGTCAATCTCTGCCATCCACTACAAGAGGGGAAAGTCAA-GAAAGAGCAGATCAGTGATGAATG]

[+] EMBL CD097814             [AACCTGCACACTAAGGCAGAGAAGCTCCACGAACCTTTCCGTAGTCTCCTTTGCCAATAACACGTTGAATTTTGAAGTTTTCAGCATTAACACGATTGTTCGGATTGACTGTCTTCTGACATATCTCGACAGTTTCTTGAGTTGTTATCTCTTCTTTGTTCTCCGAACAAATTAACTCCTTTGACAATTGATCTGAAGACTTGGTATTATTTTTCCCCGGAGACGATAGGTTGAGTCTGTCTGTTTCATCGTCTCTACACTCATCATCATTTTCAAGTTCAGCAGACAAAAAGTCAATCTCTGCCATCCACTACAAGAGGGGAAAGTCAA GAAAGAGCAGATCAGTGATG    ]
[+] EMBL CD112046             [                                                                   AATTTTGAAGTTTTCAGCATTAACACGATTGTTCGGATTGACTGTCTTCTGACATATCTCGACAGTTTCTTGAGTTGTTATCTCTTCTTTGTTCTCCGAACAAATTAACTCCTTTGACAATTGATCTGAAGACTTGGTATTATTTTTCCCCGGAGACGATAGGTTGAGTCTGTCTGTTTCATCGTCTCTACACTCATCATCATTTTCAAGTTCAGCAGACAAAAAGTCAATCTCTGCCATCCACTACAAGAGGGGAAAGTCAACCAAAGAGCAGATCAGTGATGAATG]




>consensus_4607#0
AACCTGCACACTAAGGCAGAGAAGCTCCACGAACCTTTCCGTAGTCTCCTTTGCCAATAA
CACGTTGAATTTTGAAGTTTTCAGCATTAACACGATTGTTCGGATTGACTGTCTTCTGAC
ATATCTCGACAGTTTCTTGAGTTGTTATCTCTTCTTTGTTCTCCGAACAAATTAACTCCT
TTGACAATTGATCTGAAGACTTGGTATTATTTTTCCCCGGAGACGATAGGTTGAGTCTGT
CTGTTTCATCGTCTCTACACTCATCATCATTTTCAAGTTCAGCAGACAAAAAGTCAATCT
CTGCCATCCACTACAAGAGGGGAAAGTCAAGAAAGAGCAGATCAGTGATGAATG

consensusID : consensus_4607#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence

                              [TCCTTGATCAATGCCATCAACCTTCTGAACTAGAAAAACCTTTCCGTAGCCTCCTTGCCAATAACACGTTGAATTTTGAAGTTTTCAGCATTAACACGATTGTTCGGATTGACTGTCTTCTGACATATCTCGACAGTTTCTTGAGTTGTTATCTCTTCTTTGTTCTCCGAACAAATTAACTCCTTTGACAATTGATCTGAAGACTTGGTATTATTTTTCCCCGGAGACGATAGGTTGAGTCTGTCCGTTTCATCGTCTCTACACTCATCATCATTTTCAAGTTCAG]

[+] EMBL CD068234             [TCCTTGATCAATGCCATCAACCTTCTGAACTAGAAAAACCTTTCCGTAGCCTCCTTGCCAATAACACGTTGAATTTTGAAGTTTTCAGCATTAACACGATTGTTCGGATTGACTGTCTTCTGACATATCTCGACAGTTTCTTGAGTTGTTATCTCTTCTTTGTTCTCCGAACAAATTAACTCCTTTGACAATTGATCTGAAGACTTGGTATTATTTTTCCCCGGAGACGATAGGTTGAGTCTGTCCGTTTCATCGTCTCTACACTCATCATCATTTTCAAGTTCAG]




>consensus_4607#1
TCCTTGATCAATGCCATCAACCTTCTGAACTAGAAAAACCTTTCCGTAGCCTCCTTGCCA
ATAACACGTTGAATTTTGAAGTTTTCAGCATTAACACGATTGTTCGGATTGACTGTCTTC
TGACATATCTCGACAGTTTCTTGAGTTGTTATCTCTTCTTTGTTCTCCGAACAAATTAAC
TCCTTTGACAATTGATCTGAAGACTTGGTATTATTTTTCCCCGGAGACGATAGGTTGAGT
CTGTCCGTTTCATCGTCTCTACACTCATCATCATTTTCAAGTTCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4607#0      -----AACCTGCACACTAAGGCAGAGAAGCTCCACGAACCTTTCCGTAGTCTCCTTTGCC 55
consensus_4607#1      TCCTTGATCAATGCCATCAACCTTCTGAACTAGAAAAACCTTTCCGTAGCCTCCTT-GCC 59
                            * *    *  * *  *     * **  *  ************* ****** ***

consensus_4607#0      AATAACACGTTGAATTTTGAAGTTTTCAGCATTAACACGATTGTTCGGATTGACTGTCTT 115
consensus_4607#1      AATAACACGTTGAATTTTGAAGTTTTCAGCATTAACACGATTGTTCGGATTGACTGTCTT 119
                      ************************************************************

consensus_4607#0      CTGACATATCTCGACAGTTTCTTGAGTTGTTATCTCTTCTTTGTTCTCCGAACAAATTAA 175
consensus_4607#1      CTGACATATCTCGACAGTTTCTTGAGTTGTTATCTCTTCTTTGTTCTCCGAACAAATTAA 179
                      ************************************************************

consensus_4607#0      CTCCTTTGACAATTGATCTGAAGACTTGGTATTATTTTTCCCCGGAGACGATAGGTTGAG 235
consensus_4607#1      CTCCTTTGACAATTGATCTGAAGACTTGGTATTATTTTTCCCCGGAGACGATAGGTTGAG 239
                      ************************************************************

consensus_4607#0      TCTGTCTGTTTCATCGTCTCTACACTCATCATCATTTTCAAGTTCAGCAGACAAAAAGTC 295
consensus_4607#1      TCTGTCCGTTTCATCGTCTCTACACTCATCATCATTTTCAAGTTCAG------------- 286
                      ****** ****************************************             

consensus_4607#0      AATCTCTGCCATCCACTACAAGAGGGGAAAGTCAAGAAAGAGCAGATCAGTGATGAATG 354
consensus_4607#1      -----------------------------------------------------------