cluster # 4608

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Schistosoma mansoni
cluster # 4608 cluster # 4608 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4608#0 length = 238 sequences # 2

consensus_4608#1 length = 203 sequences # 1

consensusID : consensus_4608#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 238
fasta sequence

                              [GTCATTCANCACTGAGCATCCGCCAACCAGCCTCATCGCATTCCAAACTAGGATCAACCACACTCGCGACAGACCATTCACACATATATCACTGAGACGGCATTCGATGATGTGTGTGTCAAACTTCAACAATTCCATGAAGTTCACTGACCGTTCATCTATTGTCTTCAGTCAGTTGATATCTCACAACAGACTTGGTTTGAGCTCCACTGGTCACTGCTTATCAATACAACTGCGT]

[+] EMBL CD086514             [GTCATTCANCACTGAGCATCCGCCAACCAGCCTCATCGCATTCCAAACTAGGATCAACCACACTCGCGACAGACCATTCACACATATATCACTGAGACGGCATTCGATGATGTGTGTGTCAAACTTCAACAATTCCATGAAGTTCACTGACCGTTCATCTATTGTCTTCAGTCAGTTGATATCTCACAACAGACTTGGTTTGAGCTCCACTGGTCACTGCTTATCAATACAACTGCGT]
[-] EMBL CD086933             [                                        tttgAAATTAGGATCGACCACACTGGCAAAAGACCATTCACACATATATCACTGAGCCGGCATTCGATGATGTGTGTGTCTAACTTCAACAATTCCATGAAGTTCACTGACCGTTCATCTATTGTCTTGAGTCAGTTGATATCTCACAACAGACGTG                                         ]




>consensus_4608#0
GTCATTCANCACTGAGCATCCGCCAACCAGCCTCATCGCATTCCAAACTAGGATCAACCA
CACTCGCGACAGACCATTCACACATATATCACTGAGACGGCATTCGATGATGTGTGTGTC
AAACTTCAACAATTCCATGAAGTTCACTGACCGTTCATCTATTGTCTTCAGTCAGTTGAT
ATCTCACAACAGACTTGGTTTGAGCTCCACTGGTCACTGCTTATCAATACAACTGCGT

consensusID : consensus_4608#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 203
fasta sequence

                              [AGTGTCATTCAGCAGTGAGCATCCACCAACTCGTATCATCGCATTCCAGACTGGTATCAACCAATCTCGCGACAGACCATTCACACATATATCACTGAGACGGCATNCGATGGNGTGTATGTCAAACTCCAACANTTCCATGAAGTTCACTGACCGTTTCATCTATTGTCTTGAGTCAGTNGATATCTCACAACAGACGTGGT]

[+] EMBL SMRAP110             [AGTGTCATTCAGCAGTGAGCATCCACCAACTCGTATCATCGCATTCCAGACTGGTATCAACCAATCTCGCGACAGACCATTCACACATATATCACTGAGACGGCATNCGATGGNGTGTATGTCAAACTCCAACANTTCCATGAAGTTCACTGACCGTTTCATCTATTGTCTTGAGTCAGTNGATATCTCACAACAGACGTGGT]




>consensus_4608#1
AGTGTCATTCAGCAGTGAGCATCCACCAACTCGTATCATCGCATTCCAGACTGGTATCAA
CCAATCTCGCGACAGACCATTCACACATATATCACTGAGACGGCATNCGATGGNGTGTAT
GTCAAACTCCAACANTTCCATGAAGTTCACTGACCGTTTCATCTATTGTCTTGAGTCAGT
NGATATCTCACAACAGACGTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4608#0      ---GTCATTCANCACTGAGCATCCGCCAACCAGCCTCATCGCATTCCAAACTAGGATCAA 57
consensus_4608#1      AGTGTCATTCAGCAGTGAGCATCCACCAACTCGTATCATCGCATTCCAGACTGGTATCAA 60
                         ******** ** ********* *****  *  ************* *** * *****

consensus_4608#0      CCACACTCGCGACAGACCATTCACACATATATCACTGAGACGGCATTCGATGATGTGTGT 117
consensus_4608#1      CCAATCTCGCGACAGACCATTCACACATATATCACTGAGACGGCATNCGATGGNGTGTAT 120
                      ***  ***************************************** *****  **** *

consensus_4608#0      GTCAAACTTCAACAATTCCATGAAGTTCACTGACCGTT-CATCTATTGTCTTCAGTCAGT 176
consensus_4608#1      GTCAAACTCCAACANTTCCATGAAGTTCACTGACCGTTTCATCTATTGTCTTGAGTCAGT 180
                      ******** ***** *********************** ************* *******

consensus_4608#0      TGATATCTCACAACAGACTTGGTTTGAGCTCCACTGGTCACTGCTTATCAATACAACTGC 236
consensus_4608#1      NGATATCTCACAACAGACGTGGT------------------------------------- 203
                       ***************** ****                                     

consensus_4608#0      GT 238
consensus_4608#1      --