cluster # 4609

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Schistosoma mansoni
cluster # 4609 cluster # 4609 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4609#0 length = 593 sequences # 1

consensus_4609#1 length = 225 sequences # 1
consensus_4609#2 length = 130 sequences # 1

consensusID : consensus_4609#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [TGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTGAAGGTGAGACGGAAGCCGAGTCGSAGTTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACCGAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGATTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGAACGATTGGTTGAGCGTGTCGGGGYTTGNNAAAGAGRAAATTTKGGGGAAGGGCGGAAWTGGTGAAGGTTTGGTTGAAGGCGGTAMTTTGAAGGGTGAGACGGGAAGCCGGAGTCGGAGGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACCGAGAAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGATTCTGAGGCGCTTGCAGAGACTGCAGCACANCGGGANGGAAACGATTGGTTGANCGTGTCGGTGAGATGGAGGCGGAATATGGTGAGTTGGTGAAGGCGWTTTGAAGGTGAGACGGAAGCCGAKTCGN]

[+] EMBL SM1247328            [TGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTGAAGGTGAGACGGAAGCCGAGTCGSAGTTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACCGAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGATTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGAACGATTGGTTGAGCGTGTCGGGGYTTGNNAAAGAGRAAATTTKGGGGAAGGGCGGAAWTGGTGAAGGTTTGGTTGAAGGCGGTAMTTTGAAGGGTGAGACGGGAAGCCGGAGTCGGAGGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACCGAGAAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGATTCTGAGGCGCTTGCAGAGACTGCAGCACANCGGGANGGAAACGATTGGTTGANCGTGTCGGTGAGATGGAGGCGGAATATGGTGAGTTGGTGAAGGCGWTTTGAAGGTGAGACGGAAGCCGAKTCGN]




>consensus_4609#0
TGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTGA
AGGTGAGACGGAAGCCGAGTCGSAGTTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGA
AGCGGACCGAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGC
TCCAGTCGAATTGGATTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGAACGA
TTGGTTGAGCGTGTCGGGGYTTGNNAAAGAGRAAATTTKGGGGAAGGGCGGAAWTGGTGA
AGGTTTGGTTGAAGGCGGTAMTTTGAAGGGTGAGACGGGAAGCCGGAGTCGGAGGTCGAA
GTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACCGAGAAAAGTGAAGTGGTAGAACA
GGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGATTCTGAGGCGCTTGC
AGAGACTGCAGCACANCGGGANGGAAACGATTGGTTGANCGTGTCGGTGAGATGGAGGCG
GAATATGGTGAGTTGGTGAAGGCGWTTTGAAGGTGAGACGGAAGCCGAKTCGN

consensusID : consensus_4609#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 225
fasta sequence

                              [CGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAG]

[+] EMBL CD059397             [CGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAG]




>consensus_4609#1
CGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTG
CAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATG
GTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGT
TCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAG

consensusID : consensus_4609#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 130
fasta sequence

                              [ACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGT]

[+] EMBL CD059599             [ACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGT]




>consensus_4609#2
ACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGT
ATTTGAAGGTGAGACGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGA
CGCAGAAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4609#1      ------------------------------------------------------------
consensus_4609#2      ------------------------------------------------------------
consensus_4609#0      TGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTGA 60
                                                                                  

consensus_4609#1      ------------------------------------------------------------
consensus_4609#2      ------------------------------------------------------------
consensus_4609#0      AGGTGAGACGGAAGCCGAGTCGSAGTTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGA 120
                                                                                  

consensus_4609#1      --------------------------------------CGGAACGTGTGTCTGTGTTCGC 22
consensus_4609#2      ------------------------------------------------------------
consensus_4609#0      AGCGGACCGAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGC 180
                                                                                  

consensus_4609#1      TCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACG 82
consensus_4609#2      ---------------------------------------------------------ACG 3
consensus_4609#0      TCCAGTCGAATTGGATTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGG-AACG 239
                                                                               ***

consensus_4609#1      ATTGGTTGAGCGTGTCGG----TGAGATGGAGGC------GGAATATGGTGAAGTTGGTG 132
consensus_4609#2      ATTGGTTGAGCGTGTCGG----TGAGATGGAGGC------GGAATATGGTGAAGTTGGTG 53
consensus_4609#0      ATTGGTTGAGCGTGTCGGGGYTTGNNAAAGAGRAAATTTKGGGGAAGGGCGGAAWTGGTG 299
                      ******************    **  *  ***        **   * ** * *  *****

consensus_4609#1      AAGGCGTATTTGAAGG---------------TGAGACGGAAGCC--GAGTCGGCAGTCGA 175
consensus_4609#2      AAGGCGTATTTGAAGG---------------TGAGACGG--------------CAGTCGA 84
consensus_4609#0      AAGGTTTGGTTGAAGGCGGTAMTTTGAAGGGTGAGACGGGAAGCCGGAGTCGGAGGTCGA 359
                      ****  *  *******               ********                *****

consensus_4609#1      AGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAA-GTGAAG--------- 225
consensus_4609#2      AGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAA-GT------------- 130
consensus_4609#0      AGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACCGAGAAAAGTGAAGTGGTAGAAC 419
                      *************************************  ***** **             

consensus_4609#1      ------------------------------------------------------------
consensus_4609#2      ------------------------------------------------------------
consensus_4609#0      AGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGATTCTGAGGCGCTTG 479
                                                                                  

consensus_4609#1      ------------------------------------------------------------
consensus_4609#2      ------------------------------------------------------------
consensus_4609#0      CAGAGACTGCAGCACANCGGGANGGAAACGATTGGTTGANCGTGTCGGTGAGATGGAGGC 539
                                                                                  

consensus_4609#1      ------------------------------------------------------
consensus_4609#2      ------------------------------------------------------
consensus_4609#0      GGAATATGGTGAGTTGGTGAAGGCGWTTTGAAGGTGAGACGGAAGCCGAKTCGN 593