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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4612#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 683 fasta sequence
[CCTCGNAGCCAANAATTCGGCACGAGGTAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTATGCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTTCATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGATCTCAGCCATTGGATATCTAGCTATCTTTATAGTGCACTTAATATCGCAAATAAACTTGCTCCGTGTCATCGGAATCATCCTCTCTCGTTTTTCATTATTTCAAGCTCTATTAGCATTGGATGCATCGTACTTAGCATGTATGTTTCCGGCGTAACCTTAGCTTATATAGCTCTCAATATTTGTCTAATTTTACCAACTTTGCTGCATCATCGTGTAATTTCCCGTGTTTGGGACTTGATTAAACCTATTTTAAAGCGTATCGAAGCGGAGTTCGATAAAAATCCGTTAGAATCTCCCGAAGAACGTGATGCTGGTGAGCGAGAACTTTACGAGCCTATTGTTGAAGCTGCAAATGCTGCANATTCTTCCGTATTCCCTGTTGGATTTTTAACAGACGTACCCATGANACTGGAATCTAATCAGCTAGAGTCAGAAGAACTAGANNTACTCGAAGCAGTATTCATCANACAGTTTGTT]
[+] EMBL CD082623 [CCTCGNAGCCAANAATTCGGCACGAGGTAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTATGCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTTCATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGATCTCAGCCATTGGATATCTAGCTATCTTTATAGTGCACTTAATATCGCAAATAAACTTGCTCCGTGTCATCGGAATCATCCTCTCTCGTTTTTCATTATTTCAAGCTCTATTAGCATTGGATGCATCGTACTTAGCATGTATGTTTCCGGCGTAACCTTAGCTTATATAGCTCTCAATATTTGTCTAATTTTACCAACTTTGCTGCATCATCGTGTAATTTCCCGTGTTTGGGACTTGATTAAACCTATTTTAAAGCGTATCGAAGCGGAGTTCGATAAAAATCCGTTAGAATCTCCCGAAGAACGTGATGCTGGTGAGCGAGAACTTTACGAGCCTATTGTTGAAGCTGCAAATGCTGCANATTCTTCCGTATTCCCTGTTGGATTTTTAACAGACGTACCCATGANACTGGAATCTAATCAGCTAGAGTCAGAAGAACTAGANNTACTCGAAGCAGTATTCATCANACAGTTTGTT]
[+] EMBL CD144713 [ CGCTCACCTGGTTCATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGATCTCAGCCATTGGATATCTAGCTATCTTTATAGTGCACTTAATATCGCAAATAAACTTGCTCCGTGTCATCGGAATCATCCTCTCTCGTTTTTCATTATTTCAAGCTCTATTAGCATTGGATGCATCGTACTTAGCATGTATGTTTCCGGCGTAACCTTAGCTTATATAGCTCTCAATATT ]
consensusID : consensus_4612#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence
[AATTACCTACAACTGAATATCACTATGCGAAGTCCCCATGATAAGTTTTCTATGATGTCTATAGTGTGATAAGTCAATGGGAGTTCATAATTCTTCGCATCCAGACAATACTTTTGTGGGAACGTGTGGTCCCAAGTTTTGTTTTCACAGCATTCGTACACCTTGTGTTCTTATCATTTATAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTATGCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTTCATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGAT]
[-] EMBL CD068243 [AATTACCTACAACTGAATATCACTATGCGAAGTCCCCATGATAAGTTTTCTATGATGTCTATAGTGTGATAAGTCAATGGGAGTTCATAATTCTTCGCATCCAGACAATACTTTTGTGGGAACGTGTGGTCCCAAGTTTTGTTTTCACAGCATTCGTACACCTTGTGTTCTTATCATTTATAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTATGCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTTCATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4612#0 ------------------------------------------------------------
consensus_4612#1 AATTACCTACAACTGAATATCACTATGCGAAGTCCCCATGATAAGTTTTCTATGATGTCT 60
consensus_4612#0 ------------------------------------------------------------
consensus_4612#1 ATAGTGTGATAAGTCAATGGGAGTTCATAATTCTTCGCATCCAGACAATACTTTTGTGGG 120
consensus_4612#0 ---------------------------------CCTCGNAGCCAANAATTCGGCACGAGG 27
consensus_4612#1 AACGTGTGGTCCCAAGTTTTGTTTTCACAGCATTCGTACACCTTGTGTTCTTATCATTTA 180
* * * *
consensus_4612#0 TAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTAT 87
consensus_4612#1 TAAAAAGCAACTTCAGCACACTGTTTATTTTCTGTCTGGCGTTGTTTCTTGTCCTGTTAT 240
************************************************************
consensus_4612#0 GCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTT 147
consensus_4612#1 GCAACCTCTTACAACCTCTAATGGCGAGATTTTTTCTAGATTCTAAGCGCTCACCTGGTT 300
************************************************************
consensus_4612#0 CATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGATC 207
consensus_4612#1 CATTCTCAGAACTTGTTTCCATTTGTCTGGAAAATGGGAGCATCATGTCTACTACTGAT- 359
***********************************************************
consensus_4612#0 TCAGCCATTGGATATCTAGCTATCTTTATAGTGCACTTAATATCGCAAATAAACTTGCTC 267
consensus_4612#1 ------------------------------------------------------------
consensus_4612#0 CGTGTCATCGGAATCATCCTCTCTCGTTTTTCATTATTTCAAGCTCTATTAGCATTGGAT 327
consensus_4612#1 ------------------------------------------------------------
consensus_4612#0 GCATCGTACTTAGCATGTATGTTTCCGGCGTAACCTTAGCTTATATAGCTCTCAATATTT 387
consensus_4612#1 ------------------------------------------------------------
consensus_4612#0 GTCTAATTTTACCAACTTTGCTGCATCATCGTGTAATTTCCCGTGTTTGGGACTTGATTA 447
consensus_4612#1 ------------------------------------------------------------
consensus_4612#0 AACCTATTTTAAAGCGTATCGAAGCGGAGTTCGATAAAAATCCGTTAGAATCTCCCGAAG 507
consensus_4612#1 ------------------------------------------------------------
consensus_4612#0 AACGTGATGCTGGTGAGCGAGAACTTTACGAGCCTATTGTTGAAGCTGCAAATGCTGCAN 567
consensus_4612#1 ------------------------------------------------------------
consensus_4612#0 ATTCTTCCGTATTCCCTGTTGGATTTTTAACAGACGTACCCATGANACTGGAATCTAATC 627
consensus_4612#1 ------------------------------------------------------------
consensus_4612#0 AGCTAGAGTCAGAAGAACTAGANNTACTCGAAGCAGTATTCATCANACAGTTTGTT 683
consensus_4612#1 --------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||