cluster # 4613

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4613 cluster # 4613 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4613#0 length = 446 sequences # 1

consensus_4613#1 length = 406 sequences # 2

consensusID : consensus_4613#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [CGCAAATTTTGGTGATATACACTGAATTGATAAAATAGCGATTATTAGTAGTTAATTAGTCTTCAGAATAGCTTGACCATCCATTCATCCAAATGATGTTGCTTAATTGTTGTATTGCTAAAAAATCTAATCTCTTCAAAAATGTTATTTATACTAAACGTTATGCAATGTCTGCTGACATAAAAACTGTTCTGGCGTCCAAACATTACGGGTTTATGGGATCTGGTAATATGTCTCAAGCATTGGTCAAAGGTTTTCTAGCCTCAAATGTAATGAATGGTTCTCAAGTTACAATGACTGATCGGTATGGTTTATCATTTCCAGATGCAGAGTTTCTGATACCGCTGAAAGCTTTATGTTCTAAATATGGAGTGGAATATATACAAACAAATGAACCAATGGTTGAAAAAAGTGATGTCGTGTTCGCCTGCGTTAAACCGGACATA]

[+] EMBL CD131803             [CGCAAATTTTGGTGATATACACTGAATTGATAAAATAGCGATTATTAGTAGTTAATTAGTCTTCAGAATAGCTTGACCATCCATTCATCCAAATGATGTTGCTTAATTGTTGTATTGCTAAAAAATCTAATCTCTTCAAAAATGTTATTTATACTAAACGTTATGCAATGTCTGCTGACATAAAAACTGTTCTGGCGTCCAAACATTACGGGTTTATGGGATCTGGTAATATGTCTCAAGCATTGGTCAAAGGTTTTCTAGCCTCAAATGTAATGAATGGTTCTCAAGTTACAATGACTGATCGGTATGGTTTATCATTTCCAGATGCAGAGTTTCTGATACCGCTGAAAGCTTTATGTTCTAAATATGGAGTGGAATATATACAAACAAATGAACCAATGGTTGAAAAAAGTGATGTCGTGTTCGCCTGCGTTAAACCGGACATA]




>consensus_4613#0
CGCAAATTTTGGTGATATACACTGAATTGATAAAATAGCGATTATTAGTAGTTAATTAGT
CTTCAGAATAGCTTGACCATCCATTCATCCAAATGATGTTGCTTAATTGTTGTATTGCTA
AAAAATCTAATCTCTTCAAAAATGTTATTTATACTAAACGTTATGCAATGTCTGCTGACA
TAAAAACTGTTCTGGCGTCCAAACATTACGGGTTTATGGGATCTGGTAATATGTCTCAAG
CATTGGTCAAAGGTTTTCTAGCCTCAAATGTAATGAATGGTTCTCAAGTTACAATGACTG
ATCGGTATGGTTTATCATTTCCAGATGCAGAGTTTCTGATACCGCTGAAAGCTTTATGTT
CTAAATATGGAGTGGAATATATACAAACAAATGAACCAATGGTTGAAAAAAGTGATGTCG
TGTTCGCCTGCGTTAAACCGGACATA

consensusID : consensus_4613#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 406
fasta sequence

                              [TCTAGCCTCAAATGTAATGAATGGTTCTCAAGTTACAATGACTGATCGGTATGGTTTATCATTTCCAGATGCAGAGAAATATGGAGTGGAATATATACAAACAAATGAACCAATGGTTGAAAAAAGTGATGTCGTGTTCGCCTGCGTTAAACCGCACATATTACTGCCGGCTCTAAAATGTTTATCCGATCGTTTAAATGATAAACTTTTGGTTTCTATTGCTGCAGGGATTACACTAGACCAAATACAGCAGGTTGTGCCGAAATCTACAAGAATTATCCGTATGATGCCTAATACACCGTGTTTGGTCGGTGTTGGTACTGCAGTGTATGCGCA-ACATCTTCTGTTACTGAACAAGATATTAATTTGATTTCTGCATTGTGTTCATCAATCTTTCCTGTATTTG]

[-] EMBL CD132091             [TCTAGCCTCAAATGTAATGAATGGTTCTCAAGTTACAATGACTGATCGGTATGGTTTATCATTTCCAGATGCAGAGAAATATGGAGTGGAATATATACAAACAAATGAACCAATGGTTGAAAAAAGTGATGTCGTGTTCGCCTGCGTTAAACCGCACATATTACTGCCGGCTCTAAAATGTTTATCCGATCGTTTAAATGATAAACTTTTGGTTTCTATTGCTGCAGGGATTACACTAGACCAAATACAGCAGGTTGTGCCGAAATCTACAAGAATTATCCGTATGATGCCTAATACACCGTGTTTGGTCGGTGTTGGTACTGCAGTGTATGCGCA ACATCTTCTGTTACTGAACAAGATATTAATTTGATTTCTGCATTGTGTTCATCAATCTTTCCTGTATTTG]
[+] EMBL CD185739             [                                                                                                                               GATGTCGTGTTCGCCTGCGTTAAACCGCACATATTACTGCCGGCTCTAAAATGTTTATCCGATCGTTTAAATGATAAACTTTTGGTTTCTATTGCTGCAGGGATTACACTAGACCAAATACAGCAGGTTGTGCCGAAATCTACAAGAATTATCCGTATGATGCCTAATACACCGTGTTTGGTCGGTGTTGGTACTGCAGTGTATGCGCATACATCTTCTGTTACTGAACAAGATATTAATTTGATTTCTGCATTGTGTTCATCAATCTTTCCTGTAT   ]




>consensus_4613#1
TCTAGCCTCAAATGTAATGAATGGTTCTCAAGTTACAATGACTGATCGGTATGGTTTATC
ATTTCCAGATGCAGAGAAATATGGAGTGGAATATATACAAACAAATGAACCAATGGTTGA
AAAAAGTGATGTCGTGTTCGCCTGCGTTAAACCGCACATATTACTGCCGGCTCTAAAATG
TTTATCCGATCGTTTAAATGATAAACTTTTGGTTTCTATTGCTGCAGGGATTACACTAGA
CCAAATACAGCAGGTTGTGCCGAAATCTACAAGAATTATCCGTATGATGCCTAATACACC
GTGTTTGGTCGGTGTTGGTACTGCAGTGTATGCGCAACATCTTCTGTTACTGAACAAGAT
ATTAATTTGATTTCTGCATTGTGTTCATCAATCTTTCCTGTATTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4613#0      CGCAAATTTTGGTGATATACACTGAATTGATAAAATAGCGATTATTAGTAGTTAATTAGT 60
consensus_4613#1      ---------------TCTAGCCTCAAATGT--AATGAATGGTTCTCAAGTTACAATGACT 43
                                     * **  ** ** **   **  *  * ** * *      *** * *

consensus_4613#0      CTTCAGAATAGCTTGACCATCCATTCATCCAAATGA-TGTTGCTTAATTGTTGTATTGCT 119
consensus_4613#1      GATCGGTATGGTTT-ATCATTTCCAGATGCAGAGAAATATGGAGTGGAATATATACAAAC 102
                        ** * ** * ** * ***      ** ** *  * * * *  *      * **     

consensus_4613#0      AAAAAATCTAATCTCTTCAAAAATGTTAT-TTATACTAAACGTTATGCAATGTCTGCTGA 178
consensus_4613#1      AAATGAACCAATGG-TTGAAAAAAGTGATGTCGTGTTCGCCTGCGTTAAA---CCGCACA 158
                      ***  * * ***   ** ***** ** ** *  *  *   *    *  **   * **  *

consensus_4613#0      CATAAAAACTG-TTCTGGCGTCCAAACATTACGGGTTTATGGGATCTGGTAATATGTCTC 237
consensus_4613#1      TATTACTGCCGGCTCTAAAATGTTTATCCGATCG-TTTAAATGATAAACTTTTG-GTTTC 216
                       ** *   * *  ***    *    *    *  * ****   ***    *  *  ** **

consensus_4613#0      AAGCATTGGTCAAAGGTTTTCTAGCCTCAAATGTAATGAATGGTTCTCAAGTTACAATGA 297
consensus_4613#1      TATTGCTG--CAGGGATTACACTAGACCAAATACAGCAGGTTGTGCCGAAATCTACAAGA 274
                       *    **  **  * **         *****  *     * ** *  ** *    * **

consensus_4613#0      CTGATCGGTATGGTTTATCATTTCCAGATGCAGAGTTTCTGATACCGCTGAAAGCTTTAT 357
consensus_4613#1      ATTATCCGTATGATGCCTAATACACCG-TGTTTGGTCGGTGTTGGTACTGCAG----TGT 329
                       * *** ***** *   * **   * * **    **   ** *    *** *     * *

consensus_4613#0      GTTCTAAATATGGAGTGGAATATATACAAACAAATGAACCAATGGTTGAAAAAAGTGATG 417
consensus_4613#1      ATGCGCAACATCTTCTGTTAC-TGAACAAGATATTAATTTGATTTCTGCATTGTGTT-CA 387
                       * *  ** **    **  *  *  ****   * * *    **   ** *    **    

consensus_4613#0      TCGTGTTCGCCTGCGTTAAACCGGACATA 446
consensus_4613#1      TCAATCTTTCCTGTATTTG---------- 406
                      **    *  ****  **