cluster # 4614

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Schistosoma mansoni
cluster # 4614 cluster # 4614 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4614#0 length = 648 sequences # 1

consensus_4614#1 length = 417 sequences # 1
consensus_4614#2 length = 405 sequences # 1

consensusID : consensus_4614#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 648
fasta sequence

                              [GGTGACAGAACAACGACAAATCTTTTTCTTGGGAATCTAAACCCTAAAGTATTTCGGTTTTACTCAGTACATCACATCTTCAGATGACGGAGCAGCAACTATGTGAGGCTTTTGGTCGTTACGGTCCTCTTGCAAGTGTCAAAATAATGTGGCCTAGAACAGAAGAAGAACGTTCGAGAGGAAGGAACTGTGGATTTGTTGCTTTCATGAATAGAAAAGATGGCGAACGAGCCCTCGATAATATTAGAGGGAAGGAACTTATGGGATTTGAAATGAAATTAGGTTGGGGTAAAAGCGTCCCGATCCCTTTATACCCAGTTTACATTCCTCCGGCATTGCTTGAGTTGGTTAAACCACCTCCCCCAAGTGGACTACCATTCAATGCCCAACCTAGAGAGTGGTTAAAGTCATTCCGCTTGGCGATCAAGGAGCGAGCCAAACTTGTAACTGATGGTGCAGACGGTGAGAGCGCGCCACCACCTCCGGCCCCAGACCGAAAGCCTTACGATATAAACAAGATGTCGAGTGAAGAACTTACTGAAGTTAGTATTTAGAGTCTTTCCATTCTTGNCAAACTAAGTTNTAAATAGTTNTTTTAGGAGTCAATATTATTCGCTGGGCAATATCATACTTTGTACGATGTATACT]

[+] EMBL CD082649             [GGTGACAGAACAACGACAAATCTTTTTCTTGGGAATCTAAACCCTAAAGTATTTCGGTTTTACTCAGTACATCACATCTTCAGATGACGGAGCAGCAACTATGTGAGGCTTTTGGTCGTTACGGTCCTCTTGCAAGTGTCAAAATAATGTGGCCTAGAACAGAAGAAGAACGTTCGAGAGGAAGGAACTGTGGATTTGTTGCTTTCATGAATAGAAAAGATGGCGAACGAGCCCTCGATAATATTAGAGGGAAGGAACTTATGGGATTTGAAATGAAATTAGGTTGGGGTAAAAGCGTCCCGATCCCTTTATACCCAGTTTACATTCCTCCGGCATTGCTTGAGTTGGTTAAACCACCTCCCCCAAGTGGACTACCATTCAATGCCCAACCTAGAGAGTGGTTAAAGTCATTCCGCTTGGCGATCAAGGAGCGAGCCAAACTTGTAACTGATGGTGCAGACGGTGAGAGCGCGCCACCACCTCCGGCCCCAGACCGAAAGCCTTACGATATAAACAAGATGTCGAGTGAAGAACTTACTGAAGTTAGTATTTAGAGTCTTTCCATTCTTGNCAAACTAAGTTNTAAATAGTTNTTTTAGGAGTCAATATTATTCGCTGGGCAATATCATACTTTGTACGATGTATACT]




>consensus_4614#0
GGTGACAGAACAACGACAAATCTTTTTCTTGGGAATCTAAACCCTAAAGTATTTCGGTTT
TACTCAGTACATCACATCTTCAGATGACGGAGCAGCAACTATGTGAGGCTTTTGGTCGTT
ACGGTCCTCTTGCAAGTGTCAAAATAATGTGGCCTAGAACAGAAGAAGAACGTTCGAGAG
GAAGGAACTGTGGATTTGTTGCTTTCATGAATAGAAAAGATGGCGAACGAGCCCTCGATA
ATATTAGAGGGAAGGAACTTATGGGATTTGAAATGAAATTAGGTTGGGGTAAAAGCGTCC
CGATCCCTTTATACCCAGTTTACATTCCTCCGGCATTGCTTGAGTTGGTTAAACCACCTC
CCCCAAGTGGACTACCATTCAATGCCCAACCTAGAGAGTGGTTAAAGTCATTCCGCTTGG
CGATCAAGGAGCGAGCCAAACTTGTAACTGATGGTGCAGACGGTGAGAGCGCGCCACCAC
CTCCGGCCCCAGACCGAAAGCCTTACGATATAAACAAGATGTCGAGTGAAGAACTTACTG
AAGTTAGTATTTAGAGTCTTTCCATTCTTGNCAAACTAAGTTNTAAATAGTTNTTTTAGG
AGTCAATATTATTCGCTGGGCAATATCATACTTTGTACGATGTATACT

consensusID : consensus_4614#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence

                              [ACACCTCTTCACAGACCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGTCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGACCACTCTCTCCATCGCCAAACCAACACCACCGTCTGCGCTCCCGAAACTCATCAACCAACCACTCTNGTCGCCGCCACCGCTATCACAATCGCTACCATAGCAACCGCCACCGTACCCACCCAAATAGTCATGTGATCTGGTCAAGGCAGTGGCGTAACCAATGGCTACTAATAAGACGACCGTGAGTGACTTGTCCCATTTTTAAAATTGTCGGTGTTGT]

[+] EMBL CD129693             [ACACCTCTTCACAGACCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGTCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGACCACTCTCTCCATCGCCAAACCAACACCACCGTCTGCGCTCCCGAAACTCATCAACCAACCACTCTNGTCGCCGCCACCGCTATCACAATCGCTACCATAGCAACCGCCACCGTACCCACCCAAATAGTCATGTGATCTGGTCAAGGCAGTGGCGTAACCAATGGCTACTAATAAGACGACCGTGAGTGACTTGTCCCATTTTTAAAATTGTCGGTGTTGT]




>consensus_4614#1
ACACCTCTTCACAGACCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGA
AACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGTCGCCACAAAAACTATACTCCC
GTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAAC
TACACCTCTTCACAGACCACTCTCTCCATCGCCAAACCAACACCACCGTCTGCGCTCCCG
AAACTCATCAACCAACCACTCTNGTCGCCGCCACCGCTATCACAATCGCTACCATAGCAA
CCGCCACCGTACCCACCCAAATAGTCATGTGATCTGGTCAAGGCAGTGGCGTAACCAATG
GCTACTAATAAGACGACCGTGAGTGACTTGTCCCATTTTTAAAATTGTCGGTGTTGT

consensusID : consensus_4614#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [TCAACCAACCACTCGTGTCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGCACATCTCCAATTCAAAAATACATCTCTCTCGCTCACATCTCTGGATACAACTACACCTTTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACACCACCGTCTTCGCTCCTGAA]

[+] EMBL CD145711             [TCAACCAACCACTCGTGTCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGCACATCTCCAATTCAAAAATACATCTCTCTCGCTCACATCTCTGGATACAACTACACCTTTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACACCACCGTCTTCGCTCCTGAA]




>consensus_4614#2
TCAACCAACCACTCGTGTCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGCACATCTC
CAATTCAAAAATACATCTCTCTCGCTCACATCTCTGGATACAACTACACCTTTTCACAGT
CCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAAC
ACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACAAAAACT
ATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTC
GATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTT
CGCTCCTGAAACTCATCAACCAACACCACCGTCTTCGCTCCTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4614#1      ------------------------------------------------------------
consensus_4614#2      ------------------------------------TCAACCAACCACTCGTGTCGCCGC 24
consensus_4614#0      GGTGACAGAACAACGACAAATCTTTTTCTTGGGAATCTAAACCCTAAAGTATTTCGGTTT 60
                                                                                  

consensus_4614#1      ------------------------------------------------------------
consensus_4614#2      CACAAAAACTATACTCCCGTCTAGT--CAGCACATCTCCAATTCAAAAATACATCTCTCT 82
consensus_4614#0      TACTCAGTACATCACATCTTCAGATGACGGAGCAGCAACTATGTGAGGCTTTTGGTCGTT 120
                                                                                  

consensus_4614#1      -----------------------ACACCTCTTCACAGACCACTCTCTCCATCGCCAAACC 37
consensus_4614#2      CGCTCACATCTCTGGATACAACTACACCTTTTCACAGTCCACTCTCTCCATCGCCAAACC 142
consensus_4614#0      ACGGTCCTCTTGCAAGTGTCAAAATAATGTGGCCTAGAACAGAAGAAGAACGTTCGAGAG 180
                                             * *      *  **  **        *    * *   

consensus_4614#1      AACACCACCGTC--TTCGCTCCTGAAACTCATCAACCAA--CCACTCTTGTCGC------ 87
consensus_4614#2      AACACCACCGTC--TTCGCTCCTGAAACTCATCAACCAACACCACCGTCTTCGCTCCTGA 200
consensus_4614#0      GAAGGAACTGTGGATTTGTTGCTTTCATGAATAGAAAAGATGGCGAACGAGCCCTCGATA 240
                       *    ** **   ** * * **   *   **  *  *             * *      

consensus_4614#1      ---------------CGCCACCGCCGTCGCCACAAAAACTATACTCCCGTCTAGTCAGTA 132
consensus_4614#2      AACTCATCAACCAACCACTCTTGTCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTA 260
consensus_4614#0      ATATTAGAGGGAAGGAACTTATGGGATTTGAAATGAAATTAGGTTGGGGTAAAAGCGTCC 300
                                       *    *        *   *** **   *   **  *  *    

consensus_4614#1      CACTCCAATTCAAAAATACACTCGCTCGCTCA-CATCTCTCGATACAACTA---CACCTC 188
consensus_4614#2      CACTCCAATTCAAAAATACACTCGCTCGCTCA-CATCTCTCGATACAACTA---CACCTC 316
consensus_4614#0      CGATCCCTTTATACCCAGTTTACATTCCTCCGGCATTGCTTGAGTTGGTTAAACCACCTC 360
                      *  ***  **  *         *  **   *  ***  ** **      **   ******

consensus_4614#1      TTCACAGACCACTCTC-TCCATCGCCAAACCAACACCACCGTCTGCGCTCCCGAAACTCA 247
consensus_4614#2      TTCACAGTCCACTCTC-TCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCA 375
consensus_4614#0      CCCCAAGTGGACTACCATTCAATGCCCAACCTAGAGAGTGGT-TAAAGTCATTCCGCTTG 419
                        *  **   ***  * * **  *** **** * *     ** *    **      **  

consensus_4614#1      TCAACCAACCACTC--TNGTCGCCGCCACCGCTATCACAATCGCTACCATAGCA--ACCG 303
consensus_4614#2      TCAACCAAC-ACCA--CCGTCTTCGCTCCTGAA--------------------------- 405
consensus_4614#0      GCGATCAAGGAGCGAGCCAAACTTGTAACTGATGGTGCAGACGGTGAGAGCGCGCCACCA 479
                       * * ***  *             *   * *                             

consensus_4614#1      CCACCGTACCCACCCAAATAGTCATGTGATCTGGTCAAGGCAGTGGCGTAACCAATGGCT 363
consensus_4614#2      ------------------------------------------------------------
consensus_4614#0      CCTCCGGCCCCAGACCGAAAGCCTTACGATATAAACAAGATGTCGAGTGAAGAACTTACT 539
                                                                                  

consensus_4614#1      ACTAATAAGACGACCGTGAGTGACTTGTCCCATTTTTAAAATTGTCGGTGTTGT------ 417
consensus_4614#2      ------------------------------------------------------------
consensus_4614#0      GAAGTTAGTATTTAGAGTCTTTCCATTCTTGNCAAACTAAGTTNTAAATAGTTNTTTTAG 599
                                                                                  

consensus_4614#1      -------------------------------------------------
consensus_4614#2      -------------------------------------------------
consensus_4614#0      GAGTCAATATTATTCGCTGGGCAATATCATACTTTGTACGATGTATACT 648