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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 896 fasta sequence
[ATTATTNCGGCACGAGGCATAAAANAGAAAAATGAATTCAAGAGAATGGCAGAACAAGTATTTTCTTAGTCTGTCTTCGACGTCTCTTAGGTAATGAGTCGATACCAGGTGCTCAGAAAAACTCTAATGGAATGTGATGAAGCAGATCAATATTCTACCCCTGATATAATGCATTTATCCACCAAACAGCTTGCTTCTTTGTTAGTTGAAAGCAGAGAAGCTAACAAAAGTTTAGAACATGAGCTAATGAATTCTCGCGAAAAAATTGAAGAACTCCAAGGAGATATTAAGGTGTTGAGAAAACAACTAAGCGATCGTTCATGTGAAAACCAACACACAATGGATCCTAGAGTTTCCGGAAATGATCGCCAAGCATATGTAACTCAATTGGAAGAGCTTACTTTTCAGCTCTCTGAACTTAAACGCGAATTGGGGCAATGTCTTGATGAGAAGCAAGAAATCGCAACGGAACGAGATATATATCGTAATAAATGTGATCGATTGAACAATGAATTAAATTATATTTTAAGTGGAGATGAACGAAAAATTCAAGATATCGACACCTTAATAACTGAAAGCAGAATGTTGAAAGAGCAAATCCAATCGTTGGAAATGGAAAAGTCTTTAGCATTGAGCACAATAACTAAATATAAGAAACTTTTAGATCGAAAGTTGACAAAAAACTCATCAGTTAGCAGTGAAAGTTGTATGACACCAGCAACTTCACCTAAACATCAAGAGAAGACAATTTGACATTGAACATGCTCTTGAAACGGCTTCCAGTTGGATGAGTAACCTGCATTCGTATTATGCATTCAAATCATATTACTTCGAGACATTGTCATTTGACATCGCTGTGATATTTGTATGCTCGTGNGATTATTATTATTATTATT]
[+] EMBL CD081723 [ATTATTNCGGCACGAGGCATAAAANAGAAAAATGAATTCAAGAGAATGGCAGAACAAGTATTTTCTTAGTCTGTCTTCGACGTCTCTTAGGTAATGAGTCGATACCAGGTGCTCAGAAAAACTCTAATGGAATGTGATGAAGCAGATCAATATTCTACCCCTGATATAATGCATTTATCCACCAAACAGCTTGCTTCTTTGTTAGTTGAAAGCAGAGAAGCTAACAAAAGTTTAGAACATGAGCTAATGAATTCTCGCGAAAAAATTGAAGAACTCCAAGGAGATATTAAGGTGTTGAGAAAACAACTAAGCGATCGTTCATGTGAAAACCAACACACAATGGATCCTAGAGTTTCCGGAAATGATCGCCAAGCATATGTAACTCAATTGGAAGAGCTTACTTTTCAGCTCTCTGAACTTAAACGCGAATTGGGGCAATGTCTTGATGAGAAGCAAGAAATCGCAACGGAACGAGATATATATCGTAATAAATGTGATCGATTGAACAATGAATTAAATTATATTTTAAGTGGAGATGAACGAAAAATTCAAGATATCGACACCTTAATAACTGAAAGCAGAATGTTGAAAGAGCAAATCCAATCGTTGGAAATGGAAAAGTCTTTAGCATTGAGCACAATAACTAAATATAAGAAACTTTTAGATCGAAAGTTGACAAAAAACTCATCAGTTAGCAGTGAAAGTTGTATGACACCAGCAACTTCACCTAAACATCAAGAGAAGACAATTTGACATTGAACATGCTCTTGAAACGGCTTCCAGTTGGATGAGTAACCTGCATTCGTATTATGCATTCAAATCATATTACTTCGAGACATTGTCATTTGACATCGCTGTGATATT ]
[+] EMBL CD079429 [ ATAATGCATTTATCCACCAAACAGCTTGCTTCTTTGTTAGTTGAAAGCAGAGAAGCTAACAAAAGTTTAGAACATGAGCTAATGAATTCTCGCGAAAAAATTGAAGAACTCCAAGGAGATATTAAGGTGTTGAGAAAACAACTAAGCGATCGTTCATGTGAAAACCAACACACAATGGATCCTAGAGTTTCCGGAAATGATCGCCAAGCATATGTAACTCAATTGGAAGAGCTTACTTTTCAGCTCTCTGAACTTAAACGCGAATTGGGGCAATGTCTTGATGAGAAGCAAGAAATCGCAACGGAACGAGATATATATCGTAATAAATGTGATCGATTGAACAATGAATTAAATTATATTTTAAGTGGAGATGAACGAAAAATTCAAGATATCGACACCTTAATAACTGAAAGCAGAATGTTGAAAGAGCAAATCCAATCGTTGGAAATGGAAAAGTCTTTAGCATTGAGCACAATAACTAAATATAAGAAACTTTTAGATCGAAAGTTGACAAAAAACTCATCAGTTAGCAGTGAAAGTTGTATGACACCAGCAACTTCACCTAAACATCAAGAGAAGACAATTTGACATTGAACATGCTCTTGAAACGGCTTCCAGTTGGATGAGTAACCTGCATTCGTATTATGCATTCAAATCATATTACTTCGAGACATTGTCATTTGACATCGCTGTGATATTTGTATGCTCGTGNGATTATTATTATTATTATT]
consensusID : consensus_4626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence
[CGAGCCAANATTCGGCACGAGGACAGCTTGCTTCTTTGTTAGTTGAAAGCAGAGAAGCTAACAAAAGTTTAGAACATGAGCTAATGAATTCTCGCGAAAAAATTGAAGAACTCCAAGGAGATATTAAGGTGTTGAGAAAACAACTAAGCGATCGTTCATGTGAAAACCAACACACAATGGATCCTAGAGTTTCCGGAAATGATCGCCAAGCATATGTAACTCAATTGGAAGAGCTTACTTTTCAGCTCTCTGAACTTAAACGCGAATTGGGGCAATGTCTTGATGAGAAGCAAGAAATCGCAACGGAACGAGATATATATCGTAATAAATGTGATCGATTGAACAATGAATTAAATTATATTTTAAGTGGAGATGAACGAAAAATTCAAGATATCGACACCTTAATAACTGAAAGCAGAATGTTGAAAGAGCAAATCCAATCGTTGGAAATGGAAAAGTCTTTAGCATTGAGCACAATAACTAAATATAAGAAACTTTTAGATCGAAAGTTGACAAAAAACTCATCAGTTAGCAGTGAAAGTTGTATGACACCAGCAACTTCACCTAAACATCAAGAGAAGACAATTTGACATTGAACATGCTCTTGAAACGGCTTCCAGTTGGATGAGTAACCTGCATTCGTATTATGCATTCAAATCATATTACTTCGAGACATTGTCATTTGACATCGCTGTGATA]
[+] EMBL CD082598 [CGAGCCAANATTCGGCACGAGGACAGCTTGCTTCTTTGTTAGTTGAAAGCAGAGAAGCTAACAAAAGTTTAGAACATGAGCTAATGAATTCTCGCGAAAAAATTGAAGAACTCCAAGGAGATATTAAGGTGTTGAGAAAACAACTAAGCGATCGTTCATGTGAAAACCAACACACAATGGATCCTAGAGTTTCCGGAAATGATCGCCAAGCATATGTAACTCAATTGGAAGAGCTTACTTTTCAGCTCTCTGAACTTAAACGCGAATTGGGGCAATGTCTTGATGAGAAGCAAGAAATCGCAACGGAACGAGATATATATCGTAATAAATGTGATCGATTGAACAATGAATTAAATTATATTTTAAGTGGAGATGAACGAAAAATTCAAGATATCGACACCTTAATAACTGAAAGCAGAATGTTGAAAGAGCAAATCCAATCGTTGGAAATGGAAAAGTCTTTAGCATTGAGCACAATAACTAAATATAAGAAACTTTTAGATCGAAAGTTGACAAAAAACTCATCAGTTAGCAGTGAAAGTTGTATGACACCAGCAACTTCACCTAAACATCAAGAGAAGACAATTTGACATTGAACATGCTCTTGAAACGGCTTCCAGTTGGATGAGTAACCTGCATTCGTATTATGCATTCAAATCATATTACTTCGAGACATTGTCATTTGACATCGCTGTGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4626#0 ATTATTNCGGCACGAGGCATAAAANAGAAAAATGAATTCAAGAGAATGGCAGAACAAGTA 60
consensus_4626#1 ------------------------------------------------------------
consensus_4626#0 TTTTCTTAGTCTGTCTTCGACGTCTCTTAGGTAATGAGTCGATACCAGGTGCTCAGAAAA 120
consensus_4626#1 ------------------------------------------------------------
consensus_4626#0 ACTCTAATGGAATGTGATGAAGCAGATCAATATTCTACCCCTGATATAATGCATTTATCC 180
consensus_4626#1 -----------------------------------------CGAGCCAA--NATTCGGCA 17
** ** *** *
consensus_4626#0 ACCAAACAGCTTGCTTCTTTGTTAGTTGAAAGCAGAGAAGCTAACAAAAGTTTAGAACAT 240
consensus_4626#1 CGAGGACAGCTTGCTTCTTTGTTAGTTGAAAGCAGAGAAGCTAACAAAAGTTTAGAACAT 77
*******************************************************
consensus_4626#0 GAGCTAATGAATTCTCGCGAAAAAATTGAAGAACTCCAAGGAGATATTAAGGTGTTGAGA 300
consensus_4626#1 GAGCTAATGAATTCTCGCGAAAAAATTGAAGAACTCCAAGGAGATATTAAGGTGTTGAGA 137
************************************************************
consensus_4626#0 AAACAACTAAGCGATCGTTCATGTGAAAACCAACACACAATGGATCCTAGAGTTTCCGGA 360
consensus_4626#1 AAACAACTAAGCGATCGTTCATGTGAAAACCAACACACAATGGATCCTAGAGTTTCCGGA 197
************************************************************
consensus_4626#0 AATGATCGCCAAGCATATGTAACTCAATTGGAAGAGCTTACTTTTCAGCTCTCTGAACTT 420
consensus_4626#1 AATGATCGCCAAGCATATGTAACTCAATTGGAAGAGCTTACTTTTCAGCTCTCTGAACTT 257
************************************************************
consensus_4626#0 AAACGCGAATTGGGGCAATGTCTTGATGAGAAGCAAGAAATCGCAACGGAACGAGATATA 480
consensus_4626#1 AAACGCGAATTGGGGCAATGTCTTGATGAGAAGCAAGAAATCGCAACGGAACGAGATATA 317
************************************************************
consensus_4626#0 TATCGTAATAAATGTGATCGATTGAACAATGAATTAAATTATATTTTAAGTGGAGATGAA 540
consensus_4626#1 TATCGTAATAAATGTGATCGATTGAACAATGAATTAAATTATATTTTAAGTGGAGATGAA 377
************************************************************
consensus_4626#0 CGAAAAATTCAAGATATCGACACCTTAATAACTGAAAGCAGAATGTTGAAAGAGCAAATC 600
consensus_4626#1 CGAAAAATTCAAGATATCGACACCTTAATAACTGAAAGCAGAATGTTGAAAGAGCAAATC 437
************************************************************
consensus_4626#0 CAATCGTTGGAAATGGAAAAGTCTTTAGCATTGAGCACAATAACTAAATATAAGAAACTT 660
consensus_4626#1 CAATCGTTGGAAATGGAAAAGTCTTTAGCATTGAGCACAATAACTAAATATAAGAAACTT 497
************************************************************
consensus_4626#0 TTAGATCGAAAGTTGACAAAAAACTCATCAGTTAGCAGTGAAAGTTGTATGACACCAGCA 720
consensus_4626#1 TTAGATCGAAAGTTGACAAAAAACTCATCAGTTAGCAGTGAAAGTTGTATGACACCAGCA 557
************************************************************
consensus_4626#0 ACTTCACCTAAACATCAAGAGAAGACAATTTGACATTGAACATGCTCTTGAAACGGCTTC 780
consensus_4626#1 ACTTCACCTAAACATCAAGAGAAGACAATTTGACATTGAACATGCTCTTGAAACGGCTTC 617
************************************************************
consensus_4626#0 CAGTTGGATGAGTAACCTGCATTCGTATTATGCATTCAAATCATATTACTTCGAGACATT 840
consensus_4626#1 CAGTTGGATGAGTAACCTGCATTCGTATTATGCATTCAAATCATATTACTTCGAGACATT 677
************************************************************
consensus_4626#0 GTCATTTGACATCGCTGTGATATTTGTATGCTCGTGNGATTATTATTATTATTATT 896
consensus_4626#1 GTCATTTGACATCGCTGTGATA---------------------------------- 699
**********************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||