cluster # 463

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Schistosoma mansoni
cluster # 463 cluster # 463 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_463#0 length = 396 sequences # 1

consensus_463#1 length = 212 sequences # 1

consensusID : consensus_463#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [CTCGATCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACTTAGCCAATTTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTTGAGTCCGGACGTTAGCACCCGGTGCTCTGTCTCCCAAGCTGTACTCTTCGGTATTCGGAGTTTGCATAGGTTTGGTAAGTCGCTCAGGAGCTCGAGCCGGACCTGTGCTCGCGAAATGGCGCGTTGCCCTTGGTAGACACCTTCCATGAGTTCCACGGCAATGCCGATCGTGCCGGTCACGCCGACGGGGTAGACCTTGAGACCGACAAGCGTCTGCTCGAGGATTGGCTGAGCGGGATCACTCGACCAGTAGCCG]

[+] EMBL CD124534             [CTCGATCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACTTAGCCAATTTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTTGAGTCCGGACGTTAGCACCCGGTGCTCTGTCTCCCAAGCTGTACTCTTCGGTATTCGGAGTTTGCATAGGTTTGGTAAGTCGCTCAGGAGCTCGAGCCGGACCTGTGCTCGCGAAATGGCGCGTTGCCCTTGGTAGACACCTTCCATGAGTTCCACGGCAATGCCGATCGTGCCGGTCACGCCGACGGGGTAGACCTTGAGACCGACAAGCGTCTGCTCGAGGATTGGCTGAGCGGGATCACTCGACCAGTAGCCG]




>consensus_463#0
CTCGATCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTG
ACTGTTTTAGCCTTCCCACTTCGTTTCCCACTTAGCCAATTTTAGGGACCTTAGCTGGCG
GTCTGGGTTGTTTCCCTCTTGAGTCCGGACGTTAGCACCCGGTGCTCTGTCTCCCAAGCT
GTACTCTTCGGTATTCGGAGTTTGCATAGGTTTGGTAAGTCGCTCAGGAGCTCGAGCCGG
ACCTGTGCTCGCGAAATGGCGCGTTGCCCTTGGTAGACACCTTCCATGAGTTCCACGGCA
ATGCCGATCGTGCCGGTCACGCCGACGGGGTAGACCTTGAGACCGACAAGCGTCTGCTCG
AGGATTGGCTGAGCGGGATCACTCGACCAGTAGCCG

consensusID : consensus_463#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 212
fasta sequence

                              [GCTCAGACAGCAGGATGTGGCTTAGAAGCGGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTCAAATCAGGCACCGAAGCCGCGGATTCATACTTTGTATGAGTGGTAGGGGAGCGTTCTGTAAGTCTGTGAAGGTGTGTCGTGAGGCATGCTGGAGATATCAGAAGTGCGAATGC]

[+] EMBL CD086990             [GCTCAGACAGCAGGATGTGGCTTAGAAGCGGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTCAAATCAGGCACCGAAGCCGCGGATTCATACTTTGTATGAGTGGTAGGGGAGCGTTCTGTAAGTCTGTGAAGGTGTGTCGTGAGGCATGCTGGAGATATCAGAAGTGCGAATGC]




>consensus_463#1
GCTCAGACAGCAGGATGTGGCTTAGAAGCGGCCATCATTTAAAGAAAGCGTAATAGCTCA
CTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTCAAATCAGGCACCGAAGCCGCG
GATTCATACTTTGTATGAGTGGTAGGGGAGCGTTCTGTAAGTCTGTGAAGGTGTGTCGTG
AGGCATGCTGGAGATATCAGAAGTGCGAATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_463#0      CTCGATCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTG 60
consensus_463#1      ------------------------------------------------------------
                                                                                 

consensus_463#0      ACTGTTTTAGCCTTCCCACTTCGTTTCCCACTTAGCCAATTTTAGGGACCTTAGCTGGCG 120
consensus_463#1      ------------------------------------------------------------
                                                                                 

consensus_463#0      GTCTGGGTTGTTTCCCTCTTGAGTCCGGACGTTAGCACCCGGTGCTCTGTCTCCCAAGCT 180
consensus_463#1      ------------------------------GCTCAGACAGCAGGATGTGGCTTAGAAGCG 30
                                                   * *   **     * * ** **   **** 

consensus_463#0      GTACTCTTCGGTATTCGGAGTTTGCATAGGTTTGGTAAGTCGCTCAGGAGCTCGAGCCGG 240
consensus_463#1      GCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGC-GCGGAAGATGT 89
                     *   ** *    *    * **          * *   *****  * *  **   **  * 

consensus_463#0      ACCTGTGCTCGCGAAATGGCGCGTTGCCCTTGGTAGACACCTTCCATGAGTTCCACGGCA 300
consensus_463#1      AACGGGGCTCAAATCAGGCACCGAAGCCGCGGATTCATACTTTGTATGAGTGGTAGGGGA 149
                     * * * ****     * *   **  ***   * *  * ** **  ******   * ** *

consensus_463#0      ATGCCGATCGTGCCGGTCACGCCGACGGGGTAGACCTTGAGACCGACAAGCGTCTGCTCG 360
consensus_463#1      GCGTT--------CTGTAAGTCTGTGAAGGTGTGTCGTGAGGCATGCTGGAGA-TATCAG 200
                       *          * ** *  * *    ***    * **** *   *  * *  *    *

consensus_463#0      AGGATTGGCTGAGCGGGATCACTCGACCAGTAGCCG 396
consensus_463#1      AAGTGCGAATGC------------------------ 212
                     * *   *  **