cluster # 4631

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Schistosoma mansoni
cluster # 4631 cluster # 4631 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4631#0 length = 426 sequences # 1

consensus_4631#1 length = 269 sequences # 2

consensusID : consensus_4631#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 426
fasta sequence

                              [GGAGTATGGGCAAAGACAAGCGTGTTGTATATTTTTACGATCCAGATTGTGGGAATTTTCATTATGGACCGAATCATCCCATGAAACCACATAGACTTACACTAACTCATACCCTTGTGGTAAATTATAATCTGACAGATCGTATGAAGGTCTACAAACCATATCATGCTAGTATGAAGGATATGATATCATTTCATTCACAAGAATATATCGAATTCTTGCGTGATGTTACACCAACTAATGTGCATACATTTCCTAAAGAAAAATTATTAACCTATAATATTGGTGAAGATTGTCCAATTTTCGATGGTATATATCGCTTTTCTTCTATTCACACTGGTGCATCACTTCAAGCTGCTAAATATTTAAATAATGGAGTAACAGATATTGCAATCAATTGGTCAGGCGGACTTCATCATGCTAAGA]

[+] EMBL AI977521             [GGAGTATGGGCAAAGACAAGCGTGTTGTATATTTTTACGATCCAGATTGTGGGAATTTTCATTATGGACCGAATCATCCCATGAAACCACATAGACTTACACTAACTCATACCCTTGTGGTAAATTATAATCTGACAGATCGTATGAAGGTCTACAAACCATATCATGCTAGTATGAAGGATATGATATCATTTCATTCACAAGAATATATCGAATTCTTGCGTGATGTTACACCAACTAATGTGCATACATTTCCTAAAGAAAAATTATTAACCTATAATATTGGTGAAGATTGTCCAATTTTCGATGGTATATATCGCTTTTCTTCTATTCACACTGGTGCATCACTTCAAGCTGCTAAATATTTAAATAATGGAGTAACAGATATTGCAATCAATTGGTCAGGCGGACTTCATCATGCTAAGA]




>consensus_4631#0
GGAGTATGGGCAAAGACAAGCGTGTTGTATATTTTTACGATCCAGATTGTGGGAATTTTC
ATTATGGACCGAATCATCCCATGAAACCACATAGACTTACACTAACTCATACCCTTGTGG
TAAATTATAATCTGACAGATCGTATGAAGGTCTACAAACCATATCATGCTAGTATGAAGG
ATATGATATCATTTCATTCACAAGAATATATCGAATTCTTGCGTGATGTTACACCAACTA
ATGTGCATACATTTCCTAAAGAAAAATTATTAACCTATAATATTGGTGAAGATTGTCCAA
TTTTCGATGGTATATATCGCTTTTCTTCTATTCACACTGGTGCATCACTTCAAGCTGCTA
AATATTTAAATAATGGAGTAACAGATATTGCAATCAATTGGTCAGGCGGACTTCATCATG
CTAAGA

consensusID : consensus_4631#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 269
fasta sequence

                              [ATTCTTGCGTGATGTTACACCAACTAATGTGCATACATTTCCTAAAGAAAAATTATTAACCTATAATATTGGTGAAGATTGTCCAATTTTCGATGGTATATATCGCTTTTCCTCTATTCACACTGGTGCATCACTTCAAGCTGCTAAATATTTAAATAATGGAGTATGCATAAAAAATTTATCAAAAAAGTCATCTATTATAATTTATTCAATTTAGGTAACAGATATTGCAATCAATTGGTCAGGCGGACTTCATCATGCTAAGGAAT]

[-] EMBL CD199575             [ATTCTTGCGTGATGTTACACCAACTAATGTGCATACATTTCCTAAAGAAAAATTATTAACCTATAATATTGGTGAAGATTGTCCAATTTTCGATGGTATATATCGCTTTTCCTCTATTCACACTGGTGCATCACTTCAAGCTGCTAAATATTTAAATAATGGAGTATGCATAAAAAATTTATCAAAAAAGTCATCTATTATAATTTATTCAATTTAGGTAACAGATATTGCAATCAATTGGTCAGGCGGACTTCATCATGCTAAGGAAT]
[-] EMBL CD199474             [ATTCTTGCGTGATGTTACACCAACTAATGTGCATACATTTCCTAAAGAAAAATTATTAACCTATAATATTGGTGAAGATTGTCCAATTTTCGATGGTATATATCGCTTTTCCTCTATTCACACTGGTGCATCACTTCAAGCTGCTAAATATTTAAATAATGGAGTATGCATAAAAAATTTATCAAAAAAGTCATCTATTATAATTTATTCAATTTAGGTAACAGATATTGCGATCAATTGGTCAGGCGGACTTCATCATGCTAAGAAAT]




>consensus_4631#1
ATTCTTGCGTGATGTTACACCAACTAATGTGCATACATTTCCTAAAGAAAAATTATTAAC
CTATAATATTGGTGAAGATTGTCCAATTTTCGATGGTATATATCGCTTTTCCTCTATTCA
CACTGGTGCATCACTTCAAGCTGCTAAATATTTAAATAATGGAGTATGCATAAAAAATTT
ATCAAAAAAGTCATCTATTATAATTTATTCAATTTAGGTAACAGATATTGCAATCAATTG
GTCAGGCGGACTTCATCATGCTAAGGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4631#0      GGAGTATGGGCAAAGACAAGCGTGTTGTATATTTTTACGATCCAGATTGTGGGAATTTTC 60
consensus_4631#1      ------------------------------------------------------------
                                                                                  

consensus_4631#0      ATTATGGACCGAATCATCCCATGAAACCACATAGACTTACACTAACTCATACCCTTGTGG 120
consensus_4631#1      ------------------------------------------------------------
                                                                                  

consensus_4631#0      TAAATTATAATCTGACAGATCGTATGAAGGTCTACAAACCATATCATGCTAGTATGAAGG 180
consensus_4631#1      ------------------------------------------------------------
                                                                                  

consensus_4631#0      ATATGATATCATTTCATTCACAAGAATATATCGAATTCTTGCGTGATGTTACACCAACTA 240
consensus_4631#1      ----------------------------------ATTCTTGCGTGATGTTACACCAACTA 26
                                                        **************************

consensus_4631#0      ATGTGCATACATTTCCTAAAGAAAAATTATTAACCTATAATATTGGTGAAGATTGTCCAA 300
consensus_4631#1      ATGTGCATACATTTCCTAAAGAAAAATTATTAACCTATAATATTGGTGAAGATTGTCCAA 86
                      ************************************************************

consensus_4631#0      TTTTCGATGGTATATATCGCTTTTCTTCTATTCACACTGGTGCATCACTTCAAGCTGCTA 360
consensus_4631#1      TTTTCGATGGTATATATCGCTTTTCCTCTATTCACACTGGTGCATCACTTCAAGCTGCTA 146
                      ************************* **********************************

consensus_4631#0      AATATTTAAATAATGGAGTA---------------------------------------- 380
consensus_4631#1      AATATTTAAATAATGGAGTATGCATAAAAAATTTATCAAAAAAGTCATCTATTATAATTT 206
                      ********************                                        

consensus_4631#0      --------------ACAGATATTGCAATCAATTGGTCAGGCGGACTTCATCATGCTAAGA 426
consensus_4631#1      ATTCAATTTAGGTAACAGATATTGCAATCAATTGGTCAGGCGGACTTCATCATGCTAAGG 266
                                    ********************************************* 

consensus_4631#0      ---
consensus_4631#1      AAT 269