cluster # 4633

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Schistosoma mansoni
cluster # 4633 cluster # 4633 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4633#0 length = 540 sequences # 1

consensus_4633#1 length = 522 sequences # 2

consensusID : consensus_4633#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [TGTTGCCATCAGTCCCCATCCTTTGTCTTTACCCGCATAAAAGGGTCTCGTCGGAGCGTAAAGCCTCATCTGGAACTGACGATTACTGCAAAAATCACCAGCAGCACAATGCAGTCCGCACTCAATATTTAGGGCACGGTTAATGCAACCAGGACCACAGGAAAGTATGCCTAGGTTAAGTTCCACTGGAGTAGGAGCGACACAATCGCAAATCCACTGTCGCATTTCATAGTGTAATGAACTAGCACGCAATCCAGTTGCCCCAAGAAGCTTGCCACTCCCCGAGTATGTTGTCTTACTGGGAATCGATGAACGGGTTGAACTCAAAAGACTGTAATCATTGTTCAACAGGTGAGCGTATTGTGGAGTAGGTGCTCCAGGATACGAAGAAAAAATGCTGCTTAGATCAACATCATAACTGTGGGACAGAAACAAGAGGATATTTGTGGAAGTCCGTTTTGAATCAACAAAAAAGTCAATTAAGTAATTCTAGCAATTGTCATTTAGTTATCAACTAATCTTATCAGNCATTCGAATGGT]

[+] EMBL CD131689             [TGTTGCCATCAGTCCCCATCCTTTGTCTTTACCCGCATAAAAGGGTCTCGTCGGAGCGTAAAGCCTCATCTGGAACTGACGATTACTGCAAAAATCACCAGCAGCACAATGCAGTCCGCACTCAATATTTAGGGCACGGTTAATGCAACCAGGACCACAGGAAAGTATGCCTAGGTTAAGTTCCACTGGAGTAGGAGCGACACAATCGCAAATCCACTGTCGCATTTCATAGTGTAATGAACTAGCACGCAATCCAGTTGCCCCAAGAAGCTTGCCACTCCCCGAGTATGTTGTCTTACTGGGAATCGATGAACGGGTTGAACTCAAAAGACTGTAATCATTGTTCAACAGGTGAGCGTATTGTGGAGTAGGTGCTCCAGGATACGAAGAAAAAATGCTGCTTAGATCAACATCATAACTGTGGGACAGAAACAAGAGGATATTTGTGGAAGTCCGTTTTGAATCAACAAAAAAGTCAATTAAGTAATTCTAGCAATTGTCATTTAGTTATCAACTAATCTTATCAGNCATTCGAATGGT]




>consensus_4633#0
TGTTGCCATCAGTCCCCATCCTTTGTCTTTACCCGCATAAAAGGGTCTCGTCGGAGCGTA
AAGCCTCATCTGGAACTGACGATTACTGCAAAAATCACCAGCAGCACAATGCAGTCCGCA
CTCAATATTTAGGGCACGGTTAATGCAACCAGGACCACAGGAAAGTATGCCTAGGTTAAG
TTCCACTGGAGTAGGAGCGACACAATCGCAAATCCACTGTCGCATTTCATAGTGTAATGA
ACTAGCACGCAATCCAGTTGCCCCAAGAAGCTTGCCACTCCCCGAGTATGTTGTCTTACT
GGGAATCGATGAACGGGTTGAACTCAAAAGACTGTAATCATTGTTCAACAGGTGAGCGTA
TTGTGGAGTAGGTGCTCCAGGATACGAAGAAAAAATGCTGCTTAGATCAACATCATAACT
GTGGGACAGAAACAAGAGGATATTTGTGGAAGTCCGTTTTGAATCAACAAAAAAGTCAAT
TAAGTAATTCTAGCAATTGTCATTTAGTTATCAACTAATCTTATCAGNCATTCGAATGGT

consensusID : consensus_4633#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 522
fasta sequence

                              [TCTTTACCCGCATAAAAGGGTCTCGTCGGAGCGTAAAGCCTCATCTGGAACTGACGATTACTGCAAAAATCACCAGCAGCACAATGCAGTCCGCACTCAATATTTAGGGCACGGTTAATGCAACCAGGACCACAGGAAAGTATGCCTAGGTTAAGTTCCACTGGAGTAGGAGCGACACAATCGCAAATCCACTGTCGCATTTCATAGTGTAATGAACTAGCACGCAATCCAGTTGCCCCAAGAAGCTTGCCACTCCCCGAGTATGTTGTCTTACTGGGAATCGATGAACGGGTTGAACTCAAAAGACTGTAATCATTGTTCAACAGGTGAGTGTATTGTGGAGTAGGTGCTCCAGGATACGAAG-AAAAAATGCTGCTTAGATCAACATCATAATCGGATAACCTTTCATGCGGATTGAGAGTGTTGGACAGAAAACACATCGGGATATGAGGCTTAATCTTCCGTTTCCGCAGGTCGTATTTCAATTCGCATGGCCTAATGTCCTGCGTACTGACAACTGTT]

[-] EMBL CD146091             [TCTTTACCCGCATAAAAGGGTCTCGTCGGAGCGTAAAGCCTCATCTGGAACTGACGATTACTGCAAAAATCACCAGCAGCACAATGCAGTCCGCACTCAATATTTAGGGCACGGTTAATGCAACCAGGACCACAGGAAAGTATGCCTAGGTTAAGTTCCACTGGAGTAGGAGCGACACAATCGCAAATCCACTGTCGCATTTCATAGTGTAATGAACTAGCACGCAATCCAGTTGCCCCAAGAAGCTTGCCACTCCCCGAGTATGTTGTCTTACTGGGAATCGATGAACGGGTTGAACTCAAAAGACTGTAATCATTGTTCAACAGGTGAGTGTATTGTGGAGTAGGTGCTCCAGGATACGAAG AAAAAATGCTGCTTAGATCAACATCATAATCGGATAACCTTTCATGCGGATTGAG                                                                                                       ]
[+] EMBL CD185790             [                                                                                                                                                                                                                                                                                               ACGGGTTGAACTCAAAAGACTGTAATCATTGTTCAACAGGTGAGTGTATTGTGGAGTAGGTGCTCCAGGATACGAAGAAAAAAATGCTGCTTAGATCAACATCATAATCGGATAACCTTTCATACGGATTGAGAGTGTTGGACAGAAAACACATCGGGATATGAGGCTTAATCTTCCGTTTCCGCAGGTCGTATTTCAATTCGCATGGCCTAATGTCCTGCGTACTGACAACTGTT]




>consensus_4633#1
TCTTTACCCGCATAAAAGGGTCTCGTCGGAGCGTAAAGCCTCATCTGGAACTGACGATTA
CTGCAAAAATCACCAGCAGCACAATGCAGTCCGCACTCAATATTTAGGGCACGGTTAATG
CAACCAGGACCACAGGAAAGTATGCCTAGGTTAAGTTCCACTGGAGTAGGAGCGACACAA
TCGCAAATCCACTGTCGCATTTCATAGTGTAATGAACTAGCACGCAATCCAGTTGCCCCA
AGAAGCTTGCCACTCCCCGAGTATGTTGTCTTACTGGGAATCGATGAACGGGTTGAACTC
AAAAGACTGTAATCATTGTTCAACAGGTGAGTGTATTGTGGAGTAGGTGCTCCAGGATAC
GAAGAAAAAATGCTGCTTAGATCAACATCATAATCGGATAACCTTTCATGCGGATTGAGA
GTGTTGGACAGAAAACACATCGGGATATGAGGCTTAATCTTCCGTTTCCGCAGGTCGTAT
TTCAATTCGCATGGCCTAATGTCCTGCGTACTGACAACTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4633#0      TGTTGCCATCAGTCCCCATCCTTTGTCTTTACCCGCATAAAAGGGTCTCGTCGGAGCGTA 60
consensus_4633#1      -------------------------TCTTTACCCGCATAAAAGGGTCTCGTCGGAGCGTA 35
                                               ***********************************

consensus_4633#0      AAGCCTCATCTGGAACTGACGATTACTGCAAAAATCACCAGCAGCACAATGCAGTCCGCA 120
consensus_4633#1      AAGCCTCATCTGGAACTGACGATTACTGCAAAAATCACCAGCAGCACAATGCAGTCCGCA 95
                      ************************************************************

consensus_4633#0      CTCAATATTTAGGGCACGGTTAATGCAACCAGGACCACAGGAAAGTATGCCTAGGTTAAG 180
consensus_4633#1      CTCAATATTTAGGGCACGGTTAATGCAACCAGGACCACAGGAAAGTATGCCTAGGTTAAG 155
                      ************************************************************

consensus_4633#0      TTCCACTGGAGTAGGAGCGACACAATCGCAAATCCACTGTCGCATTTCATAGTGTAATGA 240
consensus_4633#1      TTCCACTGGAGTAGGAGCGACACAATCGCAAATCCACTGTCGCATTTCATAGTGTAATGA 215
                      ************************************************************

consensus_4633#0      ACTAGCACGCAATCCAGTTGCCCCAAGAAGCTTGCCACTCCCCGAGTATGTTGTCTTACT 300
consensus_4633#1      ACTAGCACGCAATCCAGTTGCCCCAAGAAGCTTGCCACTCCCCGAGTATGTTGTCTTACT 275
                      ************************************************************

consensus_4633#0      GGGAATCGATGAACGGGTTGAACTCAAAAGACTGTAATCATTGTTCAACAGGTGAGCGTA 360
consensus_4633#1      GGGAATCGATGAACGGGTTGAACTCAAAAGACTGTAATCATTGTTCAACAGGTGAGTGTA 335
                      ******************************************************** ***

consensus_4633#0      TTGTGGAGTAGGTGCTCCAGGATACGAAGAAAAAATGCTGCTTAGATCAACATCATAACT 420
consensus_4633#1      TTGTGGAGTAGGTGCTCCAGGATACGAAGAAAAAATGCTGCTTAGATCAACATCATAATC 395
                      **********************************************************  

consensus_4633#0      GTGGGACAG---AAACAAGAGGATATTTGTGGAAGTCCGTTTTGAATCAACAAAAAAGTC 477
consensus_4633#1      GGATAACCTTTCATGCGGATTGAGAGTGTTGGACAGAAAACACATCGGGATATGAGGCTT 455
                      *    **     *  *     ** * *  ****                * *  *   * 

consensus_4633#0      AATTAAGTAATTCTAGCAATTGTCATTTAGTT---ATCAACTAATCTTATCAGNCATTCG 534
consensus_4633#1      AATCTTCCGTTTCCGCAGGTCGTATTTCAATTCGCATGGCCTAATGTCCTGCGTACTGAC 515
                      ***       ***      * **  ** * **   **   ***** *  *  *   *   

consensus_4633#0      AATGGT- 540
consensus_4633#1      AACTGTT 522
                      **  **