cluster # 4635

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Schistosoma mansoni
cluster # 4635 cluster # 4635 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4635#0 length = 521 sequences # 2

consensus_4635#1 length = 321 sequences # 1

consensusID : consensus_4635#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 521
fasta sequence

                              [CCCTTATCTCATCAGCGCGCTGACGACTGATGTTCTCAAAAAGAGCTCGTTCAGCAGTAATACGCTCAAAAATGGCTTCACGTTCTACCATGTCAACACGGATAGATTCTAACTGGCGAGAGAGATTTCGTTTAGCATCAGCTAAGGCGGCCTTGCTACATGCTAACTGAGCTCGCAAACATGCATTTTCATGCGCCAAACGATGATTTATTCCACTACTATCCCTTAGTAAGTTGATAATTNTTTCAGGTTCGTTTTGGATACGATCACGAACACACTGAGCTGAACGAAGCTGGTCTGCGTACCAATCACGCGAGCACTTCAAAGTGTCGATCTCTTTCTGTAAATCTTTTTGGTGATAGATGGCTTGTTTGGTAGTGTTATAAATACGGCCATCTGAATAATAGGAATGGGTCGAAGAACTGAAGAGAGGAGAACCGATTTCTGTGCGGTCAGCGGCTGAAGGAGAGCTATGATAAGTCCACGTGGATACTAGAAGATATCGCCCGNCTTCCGCCATC]

[+] EMBL CD179843             [CCCTTATCTCATCAGCGCGCTGACGACTGATGTTCTCAAAAAGAGCTCGTTCAGCAGTAATACGCTCAAAAATGGCTTCACGTTCTACCATGTCAACACGGATAGATTCTAACTGGCGAGAGAGATTTCGTTTAGCATCAGCTAAGGCGGCCTTGCTACATGCTAACTGAGCTCGCAAACATGCATTTTCATGCGCCAAACGATGATTTATTCCACTACTATCCCTTAGTAAGTTGATAATTNTTTCAGGTTCGTTTTGGATACGATCACGAACACACTGAGCTGAACGAAGCTGGTCTGCGTACCAATCACGCGAGCACTTCAAAGTGTCGATCTCTTTCTGTAAATCTTTTTGGTGATAGATGGCTTGTTTGGTAGTGTTATAAATACGGCCATCTGAATAATAGGAATGGGTCGAAGAACTGAAGAGAGGAGAACCGATTTCTGTGCGGTCAGCGGCTGAAGGAGAGCTATGATAAGTCCACGTGGATACT                           ]
[-] EMBL CD068342             [                                                                                                                                                                                                                                                                                                                                                                                                                                              AGGAGATCCGATTTCTGTGCGGTCAGCGGCTGAAGGAGAGCTATGATAAGTCCACGTGGATACTAGAAGATATCGCCCGNCTTCCGCCATC]




>consensus_4635#0
CCCTTATCTCATCAGCGCGCTGACGACTGATGTTCTCAAAAAGAGCTCGTTCAGCAGTAA
TACGCTCAAAAATGGCTTCACGTTCTACCATGTCAACACGGATAGATTCTAACTGGCGAG
AGAGATTTCGTTTAGCATCAGCTAAGGCGGCCTTGCTACATGCTAACTGAGCTCGCAAAC
ATGCATTTTCATGCGCCAAACGATGATTTATTCCACTACTATCCCTTAGTAAGTTGATAA
TTNTTTCAGGTTCGTTTTGGATACGATCACGAACACACTGAGCTGAACGAAGCTGGTCTG
CGTACCAATCACGCGAGCACTTCAAAGTGTCGATCTCTTTCTGTAAATCTTTTTGGTGAT
AGATGGCTTGTTTGGTAGTGTTATAAATACGGCCATCTGAATAATAGGAATGGGTCGAAG
AACTGAAGAGAGGAGAACCGATTTCTGTGCGGTCAGCGGCTGAAGGAGAGCTATGATAAG
TCCACGTGGATACTAGAAGATATCGCCCGNCTTCCGCCATC

consensusID : consensus_4635#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 321
fasta sequence

                              [TCATTCTTCTTGTAATCATTATGGAAAGGAACTGAATTACCTTCAGCAAGAGCTTATGGCGCGCACTGAAGAGGCAGATAAGATTGCGCATGAAGTTATACTGGCAAAGAATGAAGAAAAGCAATTTGATGAGCATTTACAGGAACTAACAAGAGATGGTTCTGCTAAAACAGATACTATTAATAGGTTGAAAGAAAAAGTTTCTGAGCTATATGAGGAAGTGGAATCCCTTCGACATTCTCATCAACAAGCCATCTATCACCAAAAAGATTTACAGAAAGAGATCGACACTTTGAAGTGCTCGCGTGATTGGTACGCAGA]

[+] EMBL CD181686             [TCATTCTTCTTGTAATCATTATGGAAAGGAACTGAATTACCTTCAGCAAGAGCTTATGGCGCGCACTGAAGAGGCAGATAAGATTGCGCATGAAGTTATACTGGCAAAGAATGAAGAAAAGCAATTTGATGAGCATTTACAGGAACTAACAAGAGATGGTTCTGCTAAAACAGATACTATTAATAGGTTGAAAGAAAAAGTTTCTGAGCTATATGAGGAAGTGGAATCCCTTCGACATTCTCATCAACAAGCCATCTATCACCAAAAAGATTTACAGAAAGAGATCGACACTTTGAAGTGCTCGCGTGATTGGTACGCAGA]




>consensus_4635#1
TCATTCTTCTTGTAATCATTATGGAAAGGAACTGAATTACCTTCAGCAAGAGCTTATGGC
GCGCACTGAAGAGGCAGATAAGATTGCGCATGAAGTTATACTGGCAAAGAATGAAGAAAA
GCAATTTGATGAGCATTTACAGGAACTAACAAGAGATGGTTCTGCTAAAACAGATACTAT
TAATAGGTTGAAAGAAAAAGTTTCTGAGCTATATGAGGAAGTGGAATCCCTTCGACATTC
TCATCAACAAGCCATCTATCACCAAAAAGATTTACAGAAAGAGATCGACACTTTGAAGTG
CTCGCGTGATTGGTACGCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4635#0      CCCTTATCTCATCAGCGCGCTGACGACTGATGTTCTCAAAAAGAGCTCGTTCAGCAGTAA 60
consensus_4635#1      ------------------------------------------------------------
                                                                                  

consensus_4635#0      TACGCTCAAAAATGGCTTCACGTTCTACCATGTCAACACGGATAGATTCTAACTGGCGAG 120
consensus_4635#1      -----------------TCATTCTTCTTGTAATCATTATGGAAAGG----AACTGA---- 35
                                       ***   *        ***  * *** **     *****     

consensus_4635#0      AGAGATTTCGTTTAGCATCAGCTAAGGCGGCCTTGCTACATGCTAACTGAGCTCGCAAAC 180
consensus_4635#1      ----ATTACCTTCAGCAAGAGCTTATGGCGCGCACTGAAGAGGCAGATAAGATTGC--GC 89
                          *** * ** ****  **** * *  **      *   *  *  * ** * **   *

consensus_4635#0      ATGCATTTTCATGCGCCAAACGATGATTTATTCCACTACTATCCCTTAGTAAGTTGATAA 240
consensus_4635#1      ATGAAGTTATAC-TGGCAAAGAATGAAGAAA----------------AGCAATTTGATGA 132
                      *** * **  *   * ****  ****   *                 ** ** ***** *

consensus_4635#0      TTNTTT-CAGGTTCGTTTTGGATACGATCACGAACACACTGAGCTGAACGAAGCTGGTCT 299
consensus_4635#1      GCATTTACAGGAACTAACAAGAGATGGTTCTGCTAAAACAGATACTATTAATA--GGTTG 190
                         *** ****  *      ** * * *   *   * ** **    *   *    ***  

consensus_4635#0      GCGTACCAATCACGCGAGCACTTCAAAGTGTCGATCTCTTTCTGTAAATCTTTTTGGTGA 359
consensus_4635#1      AAAGAAAAAGTTTCTGAGCTATATGAGGAAGTGGAATCCCTTCGACATTCTCATCAACAA 250
                          *  **      ****  *   * *    *   **  *  *  * ***  *     *

consensus_4635#0      TAGATGGCTTGTTTGGTAGTGTTATAAATACGGCCATCTGAATAATAGGAATGGGTCGAA 419
consensus_4635#1      GCCATCTATCACCAAAAAGATTTACAGAAAGAG--ATC--GACACTTTGAAGTGCTCGCG 306
                         **   *        **  *** * * *  *  ***   * * *  ***  * ***  

consensus_4635#0      GAACTGAAGAGAGGAGAACCGATTTCTGTGCGGTCAGCGGCTGAAGGAGAGCTATGATAA 479
consensus_4635#1      TGATTGGTACGCAGA--------------------------------------------- 321
                        * **    *  **                                             

consensus_4635#0      GTCCACGTGGATACTAGAAGATATCGCCCGNCTTCCGCCATC 521
consensus_4635#1      ------------------------------------------