cluster # 4636

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Schistosoma mansoni
cluster # 4636 cluster # 4636 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4636#0 length = 461 sequences # 1

consensus_4636#1 length = 441 sequences # 2

consensusID : consensus_4636#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [CAAGCGTTGGTAGCTAATATATGAGTACACCCGAGATCTTTCAAGGCCCAAACGTTGGCGCGATAGTTGACTTCGCTGGGTGGAATTAAGTGTCCTTTACCATGTCACGTTGTCGAGTAGCTGATATTAAACGTTGTAATGTGATTGGTCTTGCTCTATTTCTGTTAAACCTCGCATTTTTGAGCTAAAGATGCCTGAATAAGTTTTGTAATGACCATTGTTATTCGTAAACGATTGTTCGCTGTCGACAGTAGTACCATATATGTCATTCAGAAGTACAGTAACCTGGGAAGTACAACACATGCAACATCTCCAACAAAACCTTCGACAAGAGTGTCTGACGGCTTTCCAAACGGAGTAGTTACTTGTCGCACTCCTACTTTTTTGAATAGATTAGGGTCATCGAATCCAGAACCCCCAATAATTCCAACCTTAACTTTAGACATTCCGACTGAACTCGG]

[+] EMBL CD163667             [CAAGCGTTGGTAGCTAATATATGAGTACACCCGAGATCTTTCAAGGCCCAAACGTTGGCGCGATAGTTGACTTCGCTGGGTGGAATTAAGTGTCCTTTACCATGTCACGTTGTCGAGTAGCTGATATTAAACGTTGTAATGTGATTGGTCTTGCTCTATTTCTGTTAAACCTCGCATTTTTGAGCTAAAGATGCCTGAATAAGTTTTGTAATGACCATTGTTATTCGTAAACGATTGTTCGCTGTCGACAGTAGTACCATATATGTCATTCAGAAGTACAGTAACCTGGGAAGTACAACACATGCAACATCTCCAACAAAACCTTCGACAAGAGTGTCTGACGGCTTTCCAAACGGAGTAGTTACTTGTCGCACTCCTACTTTTTTGAATAGATTAGGGTCATCGAATCCAGAACCCCCAATAATTCCAACCTTAACTTTAGACATTCCGACTGAACTCGG]




>consensus_4636#0
CAAGCGTTGGTAGCTAATATATGAGTACACCCGAGATCTTTCAAGGCCCAAACGTTGGCG
CGATAGTTGACTTCGCTGGGTGGAATTAAGTGTCCTTTACCATGTCACGTTGTCGAGTAG
CTGATATTAAACGTTGTAATGTGATTGGTCTTGCTCTATTTCTGTTAAACCTCGCATTTT
TGAGCTAAAGATGCCTGAATAAGTTTTGTAATGACCATTGTTATTCGTAAACGATTGTTC
GCTGTCGACAGTAGTACCATATATGTCATTCAGAAGTACAGTAACCTGGGAAGTACAACA
CATGCAACATCTCCAACAAAACCTTCGACAAGAGTGTCTGACGGCTTTCCAAACGGAGTA
GTTACTTGTCGCACTCCTACTTTTTTGAATAGATTAGGGTCATCGAATCCAGAACCCCCA
ATAATTCCAACCTTAACTTTAGACATTCCGACTGAACTCGG

consensusID : consensus_4636#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 441
fasta sequence

                              [AAACTGATCAAGAACAACGAAATCTCCAGGTACCAAGTCCTCCTGCAGACTACCACAAGCGTTGGTAGCTAATATATGAGTACACCCGA-GATCTTTCAAGGCCCAAACGTTGGCGCGATAGTTGACTTCGCTGGGTGGAATTAAGTGTCCTTTACCATGTCTGGGAAGTACAACATATGCAACATCTCCAACAAAACCTTCGACAAGAGTGTCTGACGGCTTTCCAAACGGAGTAGTTACTTGTCGCACTCCTACTTTTTTGAATAGATTAGGGTCATCGAATCCAGAACCCCCAATAATTCCAACCTTAACTTTAGACATTCCGACTGAACTCGGCTAGGTTAGATAATTAACGACACAATTACAGCTCGCTATTTATAACCAGTGACGCTGTGGGCGTGTAGGGCTAGTTTTGTTTCTAAGGTTGAATATCGCGGGAAG]

[-] EMBL CD199584             [AAACTGATCAAGAACAACGAAATCTCCAGGTACCAAGTCCTCCTGCAGACTACCACAAGCGTTGGTAGCTAATATATGAGTACACCCGA GATCTTTCAAGGCCCAAACGTTGGCGCGATAGTTGACTTCGCTGGGTGGAATTAAGTGTCCTTTACCATGTCTGGGAAGTACAACATATGCAACATCTCCAACAAAACCTTCGACAAGAGTGTCTGACGGCTTTCCAAACGGAGTAGTTACTTGTCGCACTCCTACTTTTTTGAATAGATTAGGGTCATCGAATCCAGAACCCCCAATAATTCCAACCTTAACTTTAGACATTCCGACTGAACTCGGCTAGGTTAGATAATTAACGACACAATTACAGCTCGCTATTTATAA                                                            ]
[+] EMBL CD163679             [                                                       CAAGCGTTGGTAGCTAATATATGAGTACACCCGACGATCTTTCAAGGCCCAAACGTTGGCGCGATAGTTGACTTCGCTGGGTGGAATTAAGTGTCCTTTACCATGTCTGGGAAGTACAACACATGCAACATCTCCAACAAAACCTTCGACAAGAGTGTCTGACGGCTTTCCAAACGGAGTAGTTACTTGTCGCACTCCTACTTTTTTGAATAGATTAGGGTCATCGAATCCAGAACCCCCAATAATTCCAACCTCAACTTTAGACATTCCGACTGAACTCGGCTAGGTTAGATAATTAACGACACAATTACAGCTCGCTATTTATAACCAGTGACGCTGTGGGCGTGTAGGGCTAGTTTTGTTTCTAAGGTTGAATATCGCGGGAAG]




>consensus_4636#1
AAACTGATCAAGAACAACGAAATCTCCAGGTACCAAGTCCTCCTGCAGACTACCACAAGC
GTTGGTAGCTAATATATGAGTACACCCGAGATCTTTCAAGGCCCAAACGTTGGCGCGATA
GTTGACTTCGCTGGGTGGAATTAAGTGTCCTTTACCATGTCTGGGAAGTACAACATATGC
AACATCTCCAACAAAACCTTCGACAAGAGTGTCTGACGGCTTTCCAAACGGAGTAGTTAC
TTGTCGCACTCCTACTTTTTTGAATAGATTAGGGTCATCGAATCCAGAACCCCCAATAAT
TCCAACCTTAACTTTAGACATTCCGACTGAACTCGGCTAGGTTAGATAATTAACGACACA
ATTACAGCTCGCTATTTATAACCAGTGACGCTGTGGGCGTGTAGGGCTAGTTTTGTTTCT
AAGGTTGAATATCGCGGGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4636#0      CAAGCGTTGGTAGCTAATATATGAGTACACCCGAGATCTTTCAAGGCCCAAACGTTGGCG 60
consensus_4636#1      ------------------------------------------------------------
                                                                                  

consensus_4636#0      CGATAGTTGACTTCGCTGGGTGGAATTAAGTGTCCTTTACCATGTCACGTTGTCGAGTAG 120
consensus_4636#1      ---------------------------------------------------------AAA 3
                                                                                * 

consensus_4636#0      CTGATATTAAACGTTGTAATGTGATTGGTCTTGCTCTATTTCTGTTAAACCTCGCATTTT 180
consensus_4636#1      CTGATCAAGAACAACGAAATCTCCAGGTACCAAGTCC--TCCTGCAGACTACCACAAGCG 61
                      *****    ***   * *** *    *  *    **   * ***   *    * **    

consensus_4636#0      TGAGCTAAAGATGCCTGAATAAGTTTTGTAATGACCATTGTT-ATTCGTAAACG--ATTG 237
consensus_4636#1      TTGGTAGCTAATATATGAGTACACCCGAGATCTTTCAAGGCCCAAACGTTGGCGCGATAG 121
                      *  *      **   *** **        *     **  *   *  ***   **  ** *

consensus_4636#0      TTCGCTGTCGACAGTAGTACCATATATGTCATTCAGAAGTACAGTAACCTGGGAAGTACA 297
consensus_4636#1      TTGACTTCGCTGGGTGGAAT--TAAGTGTCCTT------TACCATG-TCTGGGAAGTACA 172
                      **  **       ** * *   **  **** **      ***  *   ************

consensus_4636#0      ACACATGCAACATCTCCAACAAAACCTTCGACAAGAGTGTCTGACGGCTTTCCAAACGGA 357
consensus_4636#1      ACATATGCAACATCTCCAACAAAACCTTCGACAAGAGTGTCTGACGGCTTTCCAAACGGA 232
                      *** ********************************************************

consensus_4636#0      GTAGTTACTTGTCGCACTCCTACTTTTTTGAATAGATTAGGGTCATCGAATCCAGAACCC 417
consensus_4636#1      GTAGTTACTTGTCGCACTCCTACTTTTTTGAATAGATTAGGGTCATCGAATCCAGAACCC 292
                      ************************************************************

consensus_4636#0      CCAATAATTCCAACCTTAACTTTAGACATTCCGACTGAACTCGG---------------- 461
consensus_4636#1      CCAATAATTCCAACCTTAACTTTAGACATTCCGACTGAACTCGGCTAGGTTAGATAATTA 352
                      ********************************************                

consensus_4636#0      ------------------------------------------------------------
consensus_4636#1      ACGACACAATTACAGCTCGCTATTTATAACCAGTGACGCTGTGGGCGTGTAGGGCTAGTT 412
                                                                                  

consensus_4636#0      -----------------------------
consensus_4636#1      TTGTTTCTAAGGTTGAATATCGCGGGAAG 441