cluster # 4639

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Schistosoma mansoni
cluster # 4639 cluster # 4639 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4639#0 length = 562 sequences # 1

consensus_4639#1 length = 396 sequences # 1
consensus_4639#2 length = 385 sequences # 1

consensusID : consensus_4639#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 562
fasta sequence

                              [AGAATTGGACTTAATTGGTTTTCTCATACATAAATTGTCATTATCATCATTATTATTAGCTTTATTCAATATCGTATATTTGGTACAATATAGAATTCCCAGCACAAAATATTTCAACAAGTTTCCTTGTCTTATTTCTTGATCGATCCTTGAGAGAAATATTGAATAGTCGCCTGTTAGATATTAGCAGTTCAGGAATCGATAACTGAATAATGTATATTCTTTTCGATGCATATTGCCAGCAACCACGATGTCTGTGATCGAACTCTCTTGTAATTTGTACAGTGAAATGTTGTAAATTTTTCACATATGCACCTGAATAGGTTATGCAACTAATAGGCATAATAATGTGTTAAAACAAACAAAAAAACAGAAAACTTGTTAGAATAAAGAGATGTCACAACAGGTAGATCAGATATTCAAGCAGGCCATCCAATAGATATAATAGCAGCTCGGCCTAATCAAGATCACAATTTTTTTTCTCAAAAAGTGATCACTAATGATNGATATCAAGACATTTAATGAATTTACTTAGAACCTCTTGAAATATCATATCTTTTAT]

[+] EMBL AI976004             [AGAATTGGACTTAATTGGTTTTCTCATACATAAATTGTCATTATCATCATTATTATTAGCTTTATTCAATATCGTATATTTGGTACAATATAGAATTCCCAGCACAAAATATTTCAACAAGTTTCCTTGTCTTATTTCTTGATCGATCCTTGAGAGAAATATTGAATAGTCGCCTGTTAGATATTAGCAGTTCAGGAATCGATAACTGAATAATGTATATTCTTTTCGATGCATATTGCCAGCAACCACGATGTCTGTGATCGAACTCTCTTGTAATTTGTACAGTGAAATGTTGTAAATTTTTCACATATGCACCTGAATAGGTTATGCAACTAATAGGCATAATAATGTGTTAAAACAAACAAAAAAACAGAAAACTTGTTAGAATAAAGAGATGTCACAACAGGTAGATCAGATATTCAAGCAGGCCATCCAATAGATATAATAGCAGCTCGGCCTAATCAAGATCACAATTTTTTTTCTCAAAAAGTGATCACTAATGATNGATATCAAGACATTTAATGAATTTACTTAGAACCTCTTGAAATATCATATCTTTTAT]




>consensus_4639#0
AGAATTGGACTTAATTGGTTTTCTCATACATAAATTGTCATTATCATCATTATTATTAGC
TTTATTCAATATCGTATATTTGGTACAATATAGAATTCCCAGCACAAAATATTTCAACAA
GTTTCCTTGTCTTATTTCTTGATCGATCCTTGAGAGAAATATTGAATAGTCGCCTGTTAG
ATATTAGCAGTTCAGGAATCGATAACTGAATAATGTATATTCTTTTCGATGCATATTGCC
AGCAACCACGATGTCTGTGATCGAACTCTCTTGTAATTTGTACAGTGAAATGTTGTAAAT
TTTTCACATATGCACCTGAATAGGTTATGCAACTAATAGGCATAATAATGTGTTAAAACA
AACAAAAAAACAGAAAACTTGTTAGAATAAAGAGATGTCACAACAGGTAGATCAGATATT
CAAGCAGGCCATCCAATAGATATAATAGCAGCTCGGCCTAATCAAGATCACAATTTTTTT
TCTCAAAAAGTGATCACTAATGATNGATATCAAGACATTTAATGAATTTACTTAGAACCT
CTTGAAATATCATATCTTTTAT

consensusID : consensus_4639#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [ATTATTAACTTTATTCAATATTATATTTTTGGTACAATATAGAACTCTCAGCACAATATCTTTCAACAAGTTTTCGTTTCTTACTTCTTGGTCGATCCTTACGACAAATATTGAGTGGTCGCCAGCTAGAAGTTAGCAGTCCAGGAATCGAAATCTGAATAATGTAAATTCTTTTCGCTGCATATTGCCAGCAACCACGATGTCTCTGATTGGGTTTTTTTGTAACTCGTACCGCGAAAGGTCGTAAACTTTCCGTAAACGCAACTTAATCGATTGTGAGATTAATAAACATAGTGATGTGTTAAAACAAGCATAAAACAGATAACGTGTTGAGATATCTAGAGGGCAGAAACAGGTAACCCAGATATTCAAACAGGCTGCCAATTGATTAATCCT]

[-] EMBL CD079245             [ATTATTAACTTTATTCAATATTATATTTTTGGTACAATATAGAACTCTCAGCACAATATCTTTCAACAAGTTTTCGTTTCTTACTTCTTGGTCGATCCTTACGACAAATATTGAGTGGTCGCCAGCTAGAAGTTAGCAGTCCAGGAATCGAAATCTGAATAATGTAAATTCTTTTCGCTGCATATTGCCAGCAACCACGATGTCTCTGATTGGGTTTTTTTGTAACTCGTACCGCGAAAGGTCGTAAACTTTCCGTAAACGCAACTTAATCGATTGTGAGATTAATAAACATAGTGATGTGTTAAAACAAGCATAAAACAGATAACGTGTTGAGATATCTAGAGGGCAGAAACAGGTAACCCAGATATTCAAACAGGCTGCCAATTGATTAATCCT]




>consensus_4639#1
ATTATTAACTTTATTCAATATTATATTTTTGGTACAATATAGAACTCTCAGCACAATATC
TTTCAACAAGTTTTCGTTTCTTACTTCTTGGTCGATCCTTACGACAAATATTGAGTGGTC
GCCAGCTAGAAGTTAGCAGTCCAGGAATCGAAATCTGAATAATGTAAATTCTTTTCGCTG
CATATTGCCAGCAACCACGATGTCTCTGATTGGGTTTTTTTGTAACTCGTACCGCGAAAG
GTCGTAAACTTTCCGTAAACGCAACTTAATCGATTGTGAGATTAATAAACATAGTGATGT
GTTAAAACAAGCATAAAACAGATAACGTGTTGAGATATCTAGAGGGCAGAAACAGGTAAC
CCAGATATTCAAACAGGCTGCCAATTGATTAATCCT

consensusID : consensus_4639#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [AAATATTGAGCGATCACCAGTTAGATCTTAACAGTTCAGGAATCGATATCTGAATAATGTATATTCTTTTCGATGCATATTGCCAGCAACCACGATGTCTCTGATTAGTCTGTTTTGTAAGTTTTGCAGCGCAATGTAGTAAACTTTTCAGAAACGAACCTGAATAGGTTATCAGACTAATAGGCATAATAATGTGTCAAAACAAACAAGGAAACAGATATTTTGTTGAAATATCCAAATGGCAGGAACAGGTAGCCCAGATATTCAAGCAGGCCACCTTGGTAATGCAGTTTAATAAAGAAGTAATTTGAATTACTAAGCTTTGAGTTACATTTGTTGTCTATGATTAGAGGTACTACCTAGTTCGGTTATATGAAACCGGCTT]

[-] EMBL CD184810             [AAATATTGAGCGATCACCAGTTAGATCTTAACAGTTCAGGAATCGATATCTGAATAATGTATATTCTTTTCGATGCATATTGCCAGCAACCACGATGTCTCTGATTAGTCTGTTTTGTAAGTTTTGCAGCGCAATGTAGTAAACTTTTCAGAAACGAACCTGAATAGGTTATCAGACTAATAGGCATAATAATGTGTCAAAACAAACAAGGAAACAGATATTTTGTTGAAATATCCAAATGGCAGGAACAGGTAGCCCAGATATTCAAGCAGGCCACCTTGGTAATGCAGTTTAATAAAGAAGTAATTTGAATTACTAAGCTTTGAGTTACATTTGTTGTCTATGATTAGAGGTACTACCTAGTTCGGTTATATGAAACCGGCTT]




>consensus_4639#2
AAATATTGAGCGATCACCAGTTAGATCTTAACAGTTCAGGAATCGATATCTGAATAATGT
ATATTCTTTTCGATGCATATTGCCAGCAACCACGATGTCTCTGATTAGTCTGTTTTGTAA
GTTTTGCAGCGCAATGTAGTAAACTTTTCAGAAACGAACCTGAATAGGTTATCAGACTAA
TAGGCATAATAATGTGTCAAAACAAACAAGGAAACAGATATTTTGTTGAAATATCCAAAT
GGCAGGAACAGGTAGCCCAGATATTCAAGCAGGCCACCTTGGTAATGCAGTTTAATAAAG
AAGTAATTTGAATTACTAAGCTTTGAGTTACATTTGTTGTCTATGATTAGAGGTACTACC
TAGTTCGGTTATATGAAACCGGCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4639#0      AGAATTGGACTTAATTGGTTTTCTCATACATAAATTGTCATTATCATCATTATTATTAGC 60
consensus_4639#1      ---------------------------------------------------ATTATTAAC 9
consensus_4639#2      ------------------------------------------------------------
                                                                                  

consensus_4639#0      TTTATTCAATATCGTATATTTGGTACAATATAGAATTCCCAGCACAAAATATTTCAACAA 120
consensus_4639#1      TTTATTCAATATTATATTTTTGGTACAATATAGAACTCTCAGCACAATATCTTTCAACAA 69
consensus_4639#2      ------------------------------------------------------------
                                                                                  

consensus_4639#0      GTTTCCTTGTCTTATTTCTTGATCGATCCTTGAGAGAAATATTGAATAGTCGCCTGTTAG 180
consensus_4639#1      GTTTTCGTTTCTTACTTCTTGGTCGATCCTTACGACAAATATTGAGTGGTCGCCAGCTAG 129
consensus_4639#2      ------------------------------------AAATATTGAGCGATCACCAGTTAG 24
                                                          *********    ** ** * ***

consensus_4639#0      ATATTAGCAGTTCAGGAATCGATAACTGAATAATGTATATTCTTTTCGATGCATATTGCC 240
consensus_4639#1      AAGTTAGCAGTCCAGGAATCGAAATCTGAATAATGTAAATTCTTTTCGCTGCATATTGCC 189
consensus_4639#2      ATCTTAACAGTTCAGGAATCGATATCTGAATAATGTATATTCTTTTCGATGCATATTGCC 84
                      *  *** **** ********** * ************ ********** ***********

consensus_4639#0      AGCAACCACGATGTCTGTGATCGAACTCTCTTGTAATTTGTACAGTGAAATGTTGTAAAT 300
consensus_4639#1      AGCAACCACGATGTCTCTGATTGGGTTTTTTTGTAACTCGTACCGCGAAAGGTCGTAAAC 249
consensus_4639#2      AGCAACCACGATGTCTCTGATTAGTCTGTTTTGTAAGTTTTGCAGCGCAATGTAGTAAAC 144
                      **************** ****     * * ****** *  * * * * ** ** ***** 

consensus_4639#0      TTTTCACATATGCACCTGAATAGGTTATGCAACTAATAGGCATAATAATGTGTTAAAACA 360
consensus_4639#1      TTTCCGTAAACGCAACTTAATCGATTGTGAGATTAATAAACATAGTGATGTGTTAAAACA 309
consensus_4639#2      TTTTCAGAAACGAACCTGAATAGGTTATCAGACTAATAGGCATAATAATGTGTCAAAACA 204
                      *** *  * * * * ** *** * ** *   * *****  **** * ****** ******

consensus_4639#0      AACAAAAAAACAGAAAACTTGTTAGAATAAAGAGATGTCACAA-CAGGTAGATCAGATAT 419
consensus_4639#1      AGCATAAAA-CAGATAACGTGTTGAGATATCTAGAGGGCAGAAACAGGTAACCCAGATAT 368
consensus_4639#2      AACAAGGAAACAGATATTTTGTTGAAATATCCAAATGGCAGGAACAGGTAGCCCAGATAT 264
                      * **   ** **** *   ****   ***   * * * **  * ******   *******

consensus_4639#0      TCAAGCAGGCCATCCAATAGATATAATAGCAGCTCGGCCTAATCAAGATCACAATTTTTT 479
consensus_4639#1      TCAAACAGGCTG-CCAATTGAT-TAATCCT------------------------------ 396
consensus_4639#2      TCAAGCAGGCCACCTTGGTAATGCAGTTTAATAAAGAAGTAATTTGAATTACTAAGCTTT 324
                      **** *****   *      **  * *                                 

consensus_4639#0      TTCTCAAAAA-GTGATCACTAATGATNGATATCAAGACATTTAATGAATTTACTTAGAAC 538
consensus_4639#1      ------------------------------------------------------------
consensus_4639#2      GAGTTACATTTGTTGTCTATGATTAGAGGTACTACCTAGTTCGGTTATATGAAACCGGCT 384
                                                                                  

consensus_4639#0      CTCTTGAAATATCATATCTTTTAT 562
consensus_4639#1      ------------------------
consensus_4639#2      T----------------------- 385