cluster # 4640

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Schistosoma mansoni
cluster # 4640 cluster # 4640 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4640#0 length = 384 sequences # 2

consensus_4640#1 length = 134 sequences # 1

consensusID : consensus_4640#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 384
fasta sequence

                              [TATGACTGTCCGTTGGATGCTGCACTAACTTATCCAACGTTGGTAAAGTACATTGTGGCTTTTTTGATTTGTTATTAACAGGTCCTGGAAAGTAACGTGCCTTCGACTTATAAAATGACGCAGCCGACGTTATACTACTAAGGTTCCCATTTGAGGGGATAAGCTGATTAGACGGTGGAATAAGAGGTCTTGTTTTGGTTGTACAATTTATTAGTTCGTCGATGTCTAAAGAATCTCGTTTCTGGGTACTGAGAATATTATTATCGGGATGATCAGTTAATCGAGAACCATATCGTTGTTTTACTTCTTTTGTTAAATTACATCATTTCTATGTGTTATAGAAGAAAACCCAGAGCTTTAAGATATCTTATAATCAAAGGAATA]

[+] EMBL CD164178             [TATGACTGTCCGTTGGATGCTGCACTAACTTATCCAACGTTGGTAAAGTACATTGTGGCTTTTTTGATTTGTTATTAACAGGTCCTGGAAAGTAACGTGCCTTCGACTTATAAAATGACGCAGCCG                                                                                                                                                                                                                                                                  ]
[+] EMBL CD068358             [ ATGACTGTCCG TGGATGCTGCACTAACTTATCCAACGTTGGTAAAGTACATTGTGGCTTTTTTGATTTGTTATTAACAGGTCCTGGAAAGTAACGTGCCTTCGACTTATAAAATGACGCAGCCGACGTTATACTACTAAGGTTCCCATTTGAGGGGATAAGCTGATTAGACGGTGGAATAAGAGGTCTTGTTTTGGTTGTACAATTTATTAGTTCGTCGATGTCTAAAGAATCTCGTTTCTGGGTACTGAGAATATTATTATCGGGATGATCAGTTAATCGAGAACCATATCGTTGTTTTACTTCTTTTGTTAAATTACATCATTTCTATGTGTTATAGAAGAAAACCCAGAGCTTTAAGATATCTTATAATCAAAGGAATA]




>consensus_4640#0
TATGACTGTCCGTTGGATGCTGCACTAACTTATCCAACGTTGGTAAAGTACATTGTGGCT
TTTTTGATTTGTTATTAACAGGTCCTGGAAAGTAACGTGCCTTCGACTTATAAAATGACG
CAGCCGACGTTATACTACTAAGGTTCCCATTTGAGGGGATAAGCTGATTAGACGGTGGAA
TAAGAGGTCTTGTTTTGGTTGTACAATTTATTAGTTCGTCGATGTCTAAAGAATCTCGTT
TCTGGGTACTGAGAATATTATTATCGGGATGATCAGTTAATCGAGAACCATATCGTTGTT
TTACTTCTTTTGTTAAATTACATCATTTCTATGTGTTATAGAAGAAAACCCAGAGCTTTA
AGATATCTTATAATCAAAGGAATA

consensusID : consensus_4640#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 134
fasta sequence

                              [TTTATTAGTTCGTCGATATCTAAAGAATCTCGTTTCTGGGTACTGAGAATATTATTATCGGGATGATCAGTTAATCGAGAACCATATCGTTGTTTTACTTCTTTTGTTAAATTACAACCATTTAAAATCGGTGG]

[-] EMBL CD133752             [TTTATTAGTTCGTCGATATCTAAAGAATCTCGTTTCTGGGTACTGAGAATATTATTATCGGGATGATCAGTTAATCGAGAACCATATCGTTGTTTTACTTCTTTTGTTAAATTACAACCATTTAAAATCGGTGG]




>consensus_4640#1
TTTATTAGTTCGTCGATATCTAAAGAATCTCGTTTCTGGGTACTGAGAATATTATTATCG
GGATGATCAGTTAATCGAGAACCATATCGTTGTTTTACTTCTTTTGTTAAATTACAACCA
TTTAAAATCGGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4640#0      TATGACTGTCCGTTGGATGCTGCACTAACTTATCCAACGTTGGTAAAGTACATTGTGGCT 60
consensus_4640#1      ------------------------------------------------------------
                                                                                  

consensus_4640#0      TTTTTGATTTGTTATTAACAGGTCCTGGAAAGTAACGTGCCTTCGACTTATAAAATGACG 120
consensus_4640#1      ------------------------------------------------------------
                                                                                  

consensus_4640#0      CAGCCGACGTTATACTACTAAGGTTCCCATTTGAGGGGATAAGCTGATTAGACGGTGGAA 180
consensus_4640#1      ------------------------------------------------------------
                                                                                  

consensus_4640#0      TAAGAGGTCTTGTTTTGGTTGTACAATTTATTAGTTCGTCGATGTCTAAAGAATCTCGTT 240
consensus_4640#1      --------------------------TTTATTAGTTCGTCGATATCTAAAGAATCTCGTT 34
                                                ***************** ****************

consensus_4640#0      TCTGGGTACTGAGAATATTATTATCGGGATGATCAGTTAATCGAGAACCATATCGTTGTT 300
consensus_4640#1      TCTGGGTACTGAGAATATTATTATCGGGATGATCAGTTAATCGAGAACCATATCGTTGTT 94
                      ************************************************************

consensus_4640#0      TTACTTCTTTTGTTAAATTACATCATTTCTATGTGTTATAGAAGAAAACCCAGAGCTTTA 360
consensus_4640#1      TTACTTCTTTTGTTAAATTACAACCATTTAAAAT-CGGTGG------------------- 134
                      ********************** *  **  *  *    * *                   

consensus_4640#0      AGATATCTTATAATCAAAGGAATA 384
consensus_4640#1      ------------------------