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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 738 fasta sequence
[GGGGTTAGCGACCCCATCCCGTAGAAAAACTAACGCTAAGAAAACGCTAACCAGAAAAAAAATAACTCAAACCGTTTAAACTCTGCCCTGGGAGTTGAAGGAATAATTATGACGCCTCATGATGAAAGCCGAGATTTTTCGGAAGTCACGAGGCCGATGCACCTTCTAACAACCAGAGCAACACTCCTTATAGGTACATGGAACGTTCATCAATATCTACAGACAAAACGTCCTAGTTGACAATAACCGCTGTTTAATTATGTTCGACCCTGTCGATGTTTTAGCACTACGGGAAATCATTTTCGGCATTAATAGTCCACCGCTAACTCTCCCACTGTTGAACAGAGCGATAAGACATCAAAGATAGCAAAAGGAAAGTGGTTCAATCAGAATTGCAGGAAACTTTCACTGATGAGTGCTTGCATGCAGAAAACTTAAACCAGTCAATGTCTATAGACTCTTTAGAACTAACTAACAACAAACGACATACATACATATGTGTTAGCAATCTACATTTCATAAAAAATAAAGCATGAGTAAATGTATACGTGTATTTAATTTAACCAGTATTTGTTTATCTATTATGAAAACTACTTTACTAAGTAAACACGTTAATTGCTAATGTTTAACTNTAATACACCCTGAATGTGTTTAATTTATNTGNGACTATTNGTTTATGATAACTTAAAGATNTCATGAAATC-TGTAAGCGAAATCATAAGTTAAATAAACAGTCGTA]
[+] EMBL CD086883 [GGGGTTAGCGACCCCATCCCGTAGAAAAACTAACGCTAAGAAAACGCTAACCAGAAAAAAAATAACTCAAACCGTTTAAACTCTGCCCTGGGAGTTGAAGGAATAATTATGACGCCTCATGATGAAAGCCGAGATTTTTCGGAAGTCACGAGGCCGATGCACCTTCTAACAACCAGAGCAACACTCCTTATAGGTACATGGAACGTTCATCAATATCTACAGACAAAACGTCCTAGTTGACAATAACCGCTGTTTAATTATGTTCGACCCTGTCGATGTTTTAGCACTACGGGAAATCATTTTCGGCATTAATAGTCCACCGCTAACTCTCCCACTGTTGAACAGAGCGATAAGACATCAAAGATAGCAAAAGGAAAGTGGTTCAATCAGAATTGCAGGAAACTTTCACTGATGAGTGCTTGCATGCAGAAAACTTAAACCAGTCAATGTCTATAGACTCTTTAGAACTAACTAACAACAAACGACATACATACATATGTGTTAGCAATCTACATTTCATAAAAAATAAAGCATGAGTAAATGTATACGTGTATTTAATTTAACCAGTATTTGTTTATCTATTATGAAAACTACTTTACTAAGTAAACACGTTAATTGCTAATGTTTAACTNTAATACACCCTGAATGTGTTTAATTTATNTGNGACTATTNGTTTATGATAACTTAAAGATNTCATGAAATC TGTAAGCGAAATCATAAGTTAAATAAACAGTCG ]
[-] EMBL CD086872 [ TCGGAAGTCACGAGGCCGATGCACCTTCTAACAACCAGAGCAACACTCTTTATAGGTACATGGAACGTTCATCAATATCTACAGACAAAACGTCCTAGTTGACAATAACCGCTGTTTAATTATGTTCGACCCTGTCGATGTTTTAGCACTACGGGAAATCATTTTCGGCATTAATAGTCCACCGCTAACTCTCCCACTGTTGAACAGAGCGATAAGACATCAAAGATAGCAAAAGGAAAGTGGTTCAATCAGAATTGCAGAAAACTTTCACTGATGAGTGCTTGCATGCAGAAAACTTAAACCAGTCAATGTCTATAGACTCTTTAGAACTAACTAACAACAAACGACATACATACATATGTGTTAGCAATCTACATTTCATAAAAAATAAAGCATGAGTAAATGTATACGTGTATTTAATATAACCAGTATTTGTTTATCTATTATGAAAACTACTTTACTAAGTAAACACGTTAATTGCTAATGTTTAACTTTAATACACCCTGAATGTGTTTAATTTATTTGTGACTATTGTTTTACGATAACTTAAAGATTTCATG AATCTTGTAAGCGAAATCATAAGTTAAATAAACAGTCGTA]
consensusID : consensus_4642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[ATTTGTCAACTCGACTTCACTTGACTTTAGCCGTGTCACACATTTCGTACATGAGTTACAGAGAGTAACAGCTTCAACTGTACACGTCACACAGATAAGATGCTTCTGATCTAGCATATCAATCATCTAGATTTCATATGTGAACTGTTCTCGCTCGATGAGCCGGTTTTATACTACAGTATAATCTCCATCAAGGCAGGAGCGGTTGGGNCATGGGAGTTAGNCGACCCACATCCCAGTAGAAATAGCCAANCTCGTCCAGAAAAAACGCTACACCAGTATAAAATAATTCATAACCATTTAAACNTCTGCCGTCCGTGCCTGTAGAAGAATAATTATGATCGTCTCATGATGAAAGCCGAAATTCTTCGGAAGTCACGAGACCGATGCACCTTCTAACAACCAGAGCAACACTCTTTATAGGTACATGGAACGTCCG]
[+] EMBL CD163486 [ATTTGTCAACTCGACTTCACTTGACTTTAGCCGTGTCACACATTTCGTACATGAGTTACAGAGAGTAACAGCTTCAACTGTACACGTCACACAGATAAGATGCTTCTGATCTAGCATATCAATCATCTAGATTTCATATGTGAACTGTTCTCGCTCGATGAGCCGGTTTTATACTACAGTATAATCTCCATCAAGGCAGGAGCGGTTGGGNCATGGGAGTTAGNCGACCCACATCCCAGTAGAAATAGCCAANCTCGTCCAGAAAAAACGCTACACCAGTATAAAATAATTCATAACCATTTAAACNTCTGCCGTCCGTGCCTGTAGAAGAATAATTATGATCGTCTCATGATGAAAGCCGAAATTCTTCGGAAGTCACGAGACCGATGCACCTTCTAACAACCAGAGCAACACTCTTTATAGGTACATGGAACGTCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4642#0 GGGGTTAGCGACCCCATCCCGTAGAAAAACTAACGCTAAGAAAACGCTAACCAGAAAAAA 60
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 AATAACTCAAACCGTTTAAACTCTGCCCTGGGAGTTGAAGGAATAATTATGACGCCTCAT 120
consensus_4642#1 -ATTTGTCAACTCGACTTCACTTGACTTTAGCCGTGTCACACATTTCGTACATGAGTTAC 59
** **** ** * *** * * * ** * ** * * * *
consensus_4642#0 GATGAAAGCCGAGATTTTTCGGAAGTCACGAGGCCGATGCACCTTCTAACAACCAGAGCA 180
consensus_4642#1 AGAGAGTAAC-AGCTTCAACTGTACACGTCACACAGATAAGATGCTTCTGATCTAGCATA 118
** * ** ** * * * * * * *** * * * ** *
consensus_4642#0 ACACTCCTTATAGGTACATGGAACGTTCATCAATATCTACAGACAAAACGTCCTAGTTGA 240
consensus_4642#1 TCAATCATCTAGATTTCAT---ATGTGAACTGTTCTCGCTCGATGAGCCGGTTTTAT--A 173
** ** * * *** * ** * * ** ** * ** * * *
consensus_4642#0 CAATAACCGCTGTTTAATTATGTTCGACCCTGTCGATGTTTTAGCACTACGGGAAATCAT 300
consensus_4642#1 CTACAGTATAATCTCCATCAAGGCAGGAGCGGTTGGGNCATGGGAGTTAGNCGACCCACA 233
* * * * ** * * * * ** * * * ** **
consensus_4642#0 TTTCGGCATTAATAGTCCACCGCTAACTCTCCCACTGTTGAACAGAGCGATAAGACATCA 360
consensus_4642#1 TCCCAGTAGAAATAGCCAANCTCGTCCAGAAAAAACGCTACAC----CAGTATAAAATAA 289
* * * * ***** * * * * * * * * ** * ** * ** *
consensus_4642#0 AAGATAGCAAAAGGAAAGTGGTTCAATCAGAATTGCAGGAAACTTTCACTGATGAGTGCT 420
consensus_4642#1 TTCATAACCATTTAAACNTCTGCCGTCCGTGCCTGTAGAAGAAT---AATTATGATCGTC 346
*** * * ** * * * ** ** * * * * * **** *
consensus_4642#0 TGCATGCAGAAAACTTAAACCAGTCAATGTCTATAGACTCTTTAGAACTAACTAACAACA 480
consensus_4642#1 T-CATGATGAAAGCCGAAATTCTTCGGAAGTCACGAGACCGAT-GCACCTTCTAACAACC 404
* **** **** * *** ** * * * * ** ********
consensus_4642#0 AACGACATACA-TACATATGTGTTAGCAATCTACATTTCATAAAAAATAAAGCATGAGTA 539
consensus_4642#1 AGAGCAACACTCTTTATAGGTACATGGAACGTCCG------------------------- 439
* * * ** * *** ** * ** * *
consensus_4642#0 AATGTATACGTGTATTTAATTTAACCAGTATTTGTTTATCTATTATGAAAACTACTTTAC 599
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 TAAGTAAACACGTTAATTGCTAATGTTTAACTNTAATACACCCTGAATGTGTTTAATTTA 659
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 TNTGNGACTATTNGTTTATGATAACTTAAAGATNTCATGAAATCTGTAAGCGAAATCATA 719
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 AGTTAAATAAACAGTCGTA 738
consensus_4642#1 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||