cluster # 4643

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Schistosoma mansoni
cluster # 4643 cluster # 4643 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4643#0 length = 561 sequences # 2

consensus_4643#1 length = 269 sequences # 1

consensusID : consensus_4643#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 561
fasta sequence

                              [TAGGAATTGGCCTCGAGGCAAGAATCGGCACGAGGTGTGTCCGAACCATTATACCGTGAATACTTGACCGTTCCCAGCCTGGTTTCTGCTGTACTCAGATTGCTTTCAGCGCTTAATGGATTTAACTTGTTCAATCTGCCTTAATGTCTTGTTCAGACCAGTTCATCTCCCTTGCAACCATCAATTCTGCAAGGATTGCATAGTTCAGGCTTTAAACTTCACTGCATATCAATGTCCTATTTGCAGATACAGACTTTCAAACTGGTTACGGAGAGTAAAAGATATGGATTCAGCAGTTTCGGAAAGTAAAGAAAATGAAATTCGAAGTCTTTTTCCAAATTATTATGATGCCAAAGAATCGGGAATGTCTCCTTCCTTATCTGAATCTGAAATCGAAACCCTTGCAGCAAAAAACACAGATCCTATTCCAAACTGTTTTGCCGAACCAGGAGATGTGCATGATTATTATATGAAAGAGATCGAGAAGTACTCACATTTACGCTCTGTAGAAGAGAAAGAAAATGAAGAAGCTTCCTTAGCACTAGCTGCTCAGCTCCTATT]

[+] EMBL CD083640             [TAGGAATTGGCCTCGAGGCAAGAATCGGCACGAGGTGTGTCCGAACCATTATACCGTGAATACTTGACCGTTCCCAGCCTGGTTTCTGCTGTACTCAGATTGCTTTCAGCGCTTAATGGATTTAACTTGTTCAATCTGCCTTAATGTCTTGTTCAGACCAGTTCATCTCCCTTGCAACCATCAATTCTGCAAGGATTGCATAGTTCAGGCTTTAAACTTCACTGCATATCAATGTCCTATTTGCAGATACAGACTTTCAAACTGGTTACGGAGAGTAAAAGATATGGATTCAGCAGTTTCGGAAAGTAAAGAAAATGAAATTCGAAGTCTTTTTCCAAATTATTATGATGCCAAAGAATCGGGAATGTCTCCTTCCTTATCTGAATCTGAAATCGAAACCCTTGCAGCAAAAAACACAGATCCTATTCCAAACTGTTTTGCCGAACCAGGAGATGTGCATGATTATTATATGAAAGAGATCGAGAAGTACTCACATTTACGCTCTGTAGAAGAGAAAGAAAATGAAGAAGCTTCCTTAGCACTAGCTGCTCAGCTCCTATT]
[+] EMBL AI976179             [                                                           ATACTTGACCGTTCCCAGCCTGGTTTCTGCTGTACTCAGATTGCTTTCAGCGCTTAATGGATTTAACTTGTTCAATCTGCCTTAATGTCTTGTTCAGACCAGTTCATCTCCCTTGCAACCATCAATTCTGCAAGGATTGCATAGTTCAGGCTTTAAACTTCACTGCATATCAATGTCCTATTTGCAGATACAGACTTTCAAACTGGTTACGGAGAGTAAAAGATATGGATTCAGCAGTTTCGGAAAGTAAAGAAAATGAAATTCGAAGTCTTTTTCCAAATTATTATGATGCCAAAGAATCGGGAATGTCTCCTTCCTTATCTGAATCTGAAATCGAAACCCTTGCAGCAAAAAACACAGATCCTATTCCAAACTGTTTTGCCGAACCAGGAGATGTGCATGATTATTATATGAAAGAGATCGAGAAGTACTCACATTTACGCTCTGTAGAAGAGAAAGAAAATGAAGAAGCTTCCTTAGCACTAGCTGCTCAGCTCC    ]




>consensus_4643#0
TAGGAATTGGCCTCGAGGCAAGAATCGGCACGAGGTGTGTCCGAACCATTATACCGTGAA
TACTTGACCGTTCCCAGCCTGGTTTCTGCTGTACTCAGATTGCTTTCAGCGCTTAATGGA
TTTAACTTGTTCAATCTGCCTTAATGTCTTGTTCAGACCAGTTCATCTCCCTTGCAACCA
TCAATTCTGCAAGGATTGCATAGTTCAGGCTTTAAACTTCACTGCATATCAATGTCCTAT
TTGCAGATACAGACTTTCAAACTGGTTACGGAGAGTAAAAGATATGGATTCAGCAGTTTC
GGAAAGTAAAGAAAATGAAATTCGAAGTCTTTTTCCAAATTATTATGATGCCAAAGAATC
GGGAATGTCTCCTTCCTTATCTGAATCTGAAATCGAAACCCTTGCAGCAAAAAACACAGA
TCCTATTCCAAACTGTTTTGCCGAACCAGGAGATGTGCATGATTATTATATGAAAGAGAT
CGAGAAGTACTCACATTTACGCTCTGTAGAAGAGAAAGAAAATGAAGAAGCTTCCTTAGC
ACTAGCTGCTCAGCTCCTATT

consensusID : consensus_4643#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 269
fasta sequence

                              [TTGTTACTAGTACATGTATGTACCAGTTATTTTAACGTTGATAAGCACTATGCGTTATACGTCAGCCTTATGCGCTAGTTATAATTAAAATGTGTTCACAAAATATTTCATTGAGTACCAATCTTTTTGAACCTTGCAGGTGTGTTCCGAACCATTATACCGTGAATACTTGACCGTTCCCAGCCTGGTTTCTGCTGTACTCAGATTGCTTTCAGCGCTTAATGGATTTAACTTGTTCAATCTGCCTTAATGTCTTGTTCAGACCAGTT]

[-] EMBL CD166387             [TTGTTACTAGTACATGTATGTACCAGTTATTTTAACGTTGATAAGCACTATGCGTTATACGTCAGCCTTATGCGCTAGTTATAATTAAAATGTGTTCACAAAATATTTCATTGAGTACCAATCTTTTTGAACCTTGCAGGTGTGTTCCGAACCATTATACCGTGAATACTTGACCGTTCCCAGCCTGGTTTCTGCTGTACTCAGATTGCTTTCAGCGCTTAATGGATTTAACTTGTTCAATCTGCCTTAATGTCTTGTTCAGACCAGTT]




>consensus_4643#1
TTGTTACTAGTACATGTATGTACCAGTTATTTTAACGTTGATAAGCACTATGCGTTATAC
GTCAGCCTTATGCGCTAGTTATAATTAAAATGTGTTCACAAAATATTTCATTGAGTACCA
ATCTTTTTGAACCTTGCAGGTGTGTTCCGAACCATTATACCGTGAATACTTGACCGTTCC
CAGCCTGGTTTCTGCTGTACTCAGATTGCTTTCAGCGCTTAATGGATTTAACTTGTTCAA
TCTGCCTTAATGTCTTGTTCAGACCAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4643#0      ------------------------------------------------------------
consensus_4643#1      TTGTTACTAGTACATGTATGTACCAGTTATTTTAACGTTGATAAGCACTATGCGTTATAC 60
                                                                                  

consensus_4643#0      --------------------------------------TAGGAATTGGCCTCGAGGCAAG 22
consensus_4643#1      GTCAGCCTTATGCGCTAGTTATAATTAAAATGTGTTCACAAAATATTTCATTGAG-TACC 119
                                                             *  *  *  * * ***  *  

consensus_4643#0      AATCGGCACGA--------GGTGTGT-CCGAACCATTATACCGTGAATACTTGACCGTTC 73
consensus_4643#1      AATCTTTTTGAACCTTGCAGGTGTGTTCCGAACCATTATACCGTGAATACTTGACCGTTC 179
                      ****     **        ******* *********************************

consensus_4643#0      CCAGCCTGGTTTCTGCTGTACTCAGATTGCTTTCAGCGCTTAATGGATTTAACTTGTTCA 133
consensus_4643#1      CCAGCCTGGTTTCTGCTGTACTCAGATTGCTTTCAGCGCTTAATGGATTTAACTTGTTCA 239
                      ************************************************************

consensus_4643#0      ATCTGCCTTAATGTCTTGTTCAGACCAGTTCATCTCCCTTGCAACCATCAATTCTGCAAG 193
consensus_4643#1      ATCTGCCTTAATGTCTTGTTCAGACCAGTT------------------------------ 269
                      ******************************                              

consensus_4643#0      GATTGCATAGTTCAGGCTTTAAACTTCACTGCATATCAATGTCCTATTTGCAGATACAGA 253
consensus_4643#1      ------------------------------------------------------------
                                                                                  

consensus_4643#0      CTTTCAAACTGGTTACGGAGAGTAAAAGATATGGATTCAGCAGTTTCGGAAAGTAAAGAA 313
consensus_4643#1      ------------------------------------------------------------
                                                                                  

consensus_4643#0      AATGAAATTCGAAGTCTTTTTCCAAATTATTATGATGCCAAAGAATCGGGAATGTCTCCT 373
consensus_4643#1      ------------------------------------------------------------
                                                                                  

consensus_4643#0      TCCTTATCTGAATCTGAAATCGAAACCCTTGCAGCAAAAAACACAGATCCTATTCCAAAC 433
consensus_4643#1      ------------------------------------------------------------
                                                                                  

consensus_4643#0      TGTTTTGCCGAACCAGGAGATGTGCATGATTATTATATGAAAGAGATCGAGAAGTACTCA 493
consensus_4643#1      ------------------------------------------------------------
                                                                                  

consensus_4643#0      CATTTACGCTCTGTAGAAGAGAAAGAAAATGAAGAAGCTTCCTTAGCACTAGCTGCTCAG 553
consensus_4643#1      ------------------------------------------------------------
                                                                                  

consensus_4643#0      CTCCTATT 561
consensus_4643#1      --------