cluster # 4648

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Schistosoma mansoni
cluster # 4648 cluster # 4648 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4648#0 length = 619 sequences # 2

consensus_4648#1 length = 336 sequences # 1

consensusID : consensus_4648#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 619
fasta sequence

                              [ACCAAAGAGACGAAAAATTTTTGGTGGTGGTTATTTCGACTAGGTTTAATGGTGATATAAAAAACTTTTTTTGTTAAATTTGTAACATTAGACAGCTTAATTTCCAATTCAATGATTGGGGTAGCCTATTTGGAAATCACCAATGTGTATTACAAGGCAAAACCTAACGTGAAATCCTGAAGAGAAACGAAAAAGAGGAAGGCCAAAGAATACACTACGTCGGAATTAAGAAGCACACATGAAAAGGATGAATTGCAACTGGAAAGGACTGTCCACGACGGAGTTATATGGAGCATGTTGATGGGTGGCCTATGCTCCCCTATGAGGGTAAAAGGCGTAAGTGAATTAGCTGGACAACACTTCAATGTTAAGGCATAAATTCTGTGGAACATCCTTTTACATATTTCATAGTGTTCTCCAGATTATAGACTAAAAATATCAAAATATGTGAGAATTATCTTGTATATACTATATCATGATCACAACTATGAATTATGTCCAACCAACATTGAAGCGTATTCTATTCACTGACAGTCAATCAGTTGGTTGCGCAGTTTGATAACGATGATGCTGTTCAGAATCATGTTATCACTTGTTTAGAAGTATATGAAGAATGGGC]

[+] EMBL CD131660             [ACCAAAGAGACGAAAAATTTTTGGTGGTGGTTATTTCGACTAGGTTTAATGGTGATATAAAAAACTTTTTTTGTTAAATTTGTAACATTAGACAGCTTAATTTCCAATTCAATGATTGGGGTAGCCTATTTGGAAATCACCAATGTGTATTACAAGGCAAAACCTAACGTGAAATCCTGAAGAGAAACGAAAAAGAGGAAGGCCAAAGAATACACTACGTCGGAATTAAGAAGCACACATGAAAAGGATGAATTGCAACTGGAAAGGACTGTCCACGACGGAGTTATATGGAGCATGTTGATGGGTGGCCTATGCTCCCCTATGAGGGTAAAAGGCGTA                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD201385             [                                                                                                                                                                                                                                                                                 CACGACGGAGTTAGATGGAGCATGTTGATGGGTGGCCTATGCTCCCCTATGAGGGTAAAAGGCGTAAGTGAATTAGCTGGACAACACTTCAATGTTAAGGCATAAATTCTGTGGAACATCCTTTTACATATTTCATAGTGTTCTCCAGATTATAGACTAAAAATATCAAAATATGTGAGAATTATCTTGTATATACTATATCATGATCACAACTATGAATTATGTCCAACCAACATTGAAGCGTATTCTATTCACTGACAGTCAATCAGTTGGTTGCGCAGTTTGATAACGATGATGCTGTTCAGAATCATGTTATCACTTGTTTAGAAGTATATGAAGAATGGGC]




>consensus_4648#0
ACCAAAGAGACGAAAAATTTTTGGTGGTGGTTATTTCGACTAGGTTTAATGGTGATATAA
AAAACTTTTTTTGTTAAATTTGTAACATTAGACAGCTTAATTTCCAATTCAATGATTGGG
GTAGCCTATTTGGAAATCACCAATGTGTATTACAAGGCAAAACCTAACGTGAAATCCTGA
AGAGAAACGAAAAAGAGGAAGGCCAAAGAATACACTACGTCGGAATTAAGAAGCACACAT
GAAAAGGATGAATTGCAACTGGAAAGGACTGTCCACGACGGAGTTATATGGAGCATGTTG
ATGGGTGGCCTATGCTCCCCTATGAGGGTAAAAGGCGTAAGTGAATTAGCTGGACAACAC
TTCAATGTTAAGGCATAAATTCTGTGGAACATCCTTTTACATATTTCATAGTGTTCTCCA
GATTATAGACTAAAAATATCAAAATATGTGAGAATTATCTTGTATATACTATATCATGAT
CACAACTATGAATTATGTCCAACCAACATTGAAGCGTATTCTATTCACTGACAGTCAATC
AGTTGGTTGCGCAGTTTGATAACGATGATGCTGTTCAGAATCATGTTATCACTTGTTTAG
AAGTATATGAAGAATGGGC

consensusID : consensus_4648#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence

                              [CTACTTCGACCATCATCAAGAAGGTAAAAGGATTTATAAATAGTTGTCTACTCAAGATACTCAATATCCGTTGGTCGGATATCATCAGCAACAGCCTTCAGTAGGAGAGAAGAAATCAGGTTCCATCTGAAATTAGTAAAAGACGTTGGAGGTGGATAGGACATACATTGAGGAAATTATCAAACTGCACCACAAGGCATGGACTAACGTGAAATCCTGAAGAGAAACGAAAAAGAGGAAGGCCAAAGAATACACTACGTCGGAATTAAGAAGCAGACATGAAAAGGATGAATTGCAACTGGAAAGGACTGTCCACGACGGAGTTAGATGGAGCAT]

[-] EMBL CD147809             [CTACTTCGACCATCATCAAGAAGGTAAAAGGATTTATAAATAGTTGTCTACTCAAGATACTCAATATCCGTTGGTCGGATATCATCAGCAACAGCCTTCAGTAGGAGAGAAGAAATCAGGTTCCATCTGAAATTAGTAAAAGACGTTGGAGGTGGATAGGACATACATTGAGGAAATTATCAAACTGCACCACAAGGCATGGACTAACGTGAAATCCTGAAGAGAAACGAAAAAGAGGAAGGCCAAAGAATACACTACGTCGGAATTAAGAAGCAGACATGAAAAGGATGAATTGCAACTGGAAAGGACTGTCCACGACGGAGTTAGATGGAGCAT]




>consensus_4648#1
CTACTTCGACCATCATCAAGAAGGTAAAAGGATTTATAAATAGTTGTCTACTCAAGATAC
TCAATATCCGTTGGTCGGATATCATCAGCAACAGCCTTCAGTAGGAGAGAAGAAATCAGG
TTCCATCTGAAATTAGTAAAAGACGTTGGAGGTGGATAGGACATACATTGAGGAAATTAT
CAAACTGCACCACAAGGCATGGACTAACGTGAAATCCTGAAGAGAAACGAAAAAGAGGAA
GGCCAAAGAATACACTACGTCGGAATTAAGAAGCAGACATGAAAAGGATGAATTGCAACT
GGAAAGGACTGTCCACGACGGAGTTAGATGGAGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4648#0      --------------ACCAAAGAGACGAAAAATTTTT--GGTGGTGGTTATTTCGA----- 39
consensus_4648#1      CTACTTCGACCATCATCAAGAAGGTAAAAGGATTTATAAATAGTTGTCTACTCAAGATAC 60
                                    * ***  **   ***   ***     * ** **    ** *     

consensus_4648#0      -CTAGGTTTAATGGTGATATA-----AAAAACTTTTTTTGTTAAATTTGTA-ACATTAGA 92
consensus_4648#1      TCAATATCCGTTGGTCGGATATCATCAGCAACAGCCTTCAGTAGGAGAGAAGAAATCAGG 120
                       * *  *    ****   ***     *  ***    **   **     * * * ** ** 

consensus_4648#0      ---CAGCTTAATTTCCAATTCAATGATTGGGGTAG------CCTATTT---GGAAATCAC 140
consensus_4648#1      TTCCATCTGAAATTAGTAAAAGACGTTGGAGGTGGATAGGACATACATTGAGGAAATTAT 180
                         ** ** ** **   *    * * * * *** *      * **  *   ****** * 

consensus_4648#0      CAATGTGTATTACAAGGCAAAACCTAACGTGAAATCCTGAAGAGAAACGAAAAAGAGGAA 200
consensus_4648#1      CAAACTGCACCACAAGGCATGGACTAACGTGAAATCCTGAAGAGAAACGAAAAAGAGGAA 240
                      ***  ** *  ********    *************************************

consensus_4648#0      GGCCAAAGAATACACTACGTCGGAATTAAGAAGCACACATGAAAAGGATGAATTGCAACT 260
consensus_4648#1      GGCCAAAGAATACACTACGTCGGAATTAAGAAGCAGACATGAAAAGGATGAATTGCAACT 300
                      *********************************** ************************

consensus_4648#0      GGAAAGGACTGTCCACGACGGAGTTATATGGAGCATGTTGATGGGTGGCCTATGCTCCCC 320
consensus_4648#1      GGAAAGGACTGTCCACGACGGAGTTAGATGGAGCAT------------------------ 336
                      ************************** *********                        

consensus_4648#0      TATGAGGGTAAAAGGCGTAAGTGAATTAGCTGGACAACACTTCAATGTTAAGGCATAAAT 380
consensus_4648#1      ------------------------------------------------------------
                                                                                  

consensus_4648#0      TCTGTGGAACATCCTTTTACATATTTCATAGTGTTCTCCAGATTATAGACTAAAAATATC 440
consensus_4648#1      ------------------------------------------------------------
                                                                                  

consensus_4648#0      AAAATATGTGAGAATTATCTTGTATATACTATATCATGATCACAACTATGAATTATGTCC 500
consensus_4648#1      ------------------------------------------------------------
                                                                                  

consensus_4648#0      AACCAACATTGAAGCGTATTCTATTCACTGACAGTCAATCAGTTGGTTGCGCAGTTTGAT 560
consensus_4648#1      ------------------------------------------------------------
                                                                                  

consensus_4648#0      AACGATGATGCTGTTCAGAATCATGTTATCACTTGTTTAGAAGTATATGAAGAATGGGC 619
consensus_4648#1      -----------------------------------------------------------