cluster # 465

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Schistosoma mansoni
cluster # 465 cluster # 465 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_465#0 length = 418 sequences # 1

consensus_465#1 length = 303 sequences # 1

consensusID : consensus_465#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [TGGGAGTGTCTTTGGCTGTGTGCAAAGCTGGTGCAGCTGAAGATGTTATAATGCCTGCTCCAGCATTCAATGTCATTAATGGTGGCAGTCATGCCGGCAACAAGCTAGCCATGCAAGAATTTATGATTCTGCCTACTGGGGCCAGCTCTTTCACTGAAGCAATGCAAATCGGTACTGAGGTGTACCACAATTTAAAAGCTGTTATCAAACGTGAATATGGACTGGATGCATGCAACGTTGGTGACGAAGGTGGTTTTGCACCGAATATACAGGATAATATGAAAGGTCTTCANCTGCTTGAAGAGGCCATAAAAATTGCTGGCTATACTGGGAAAGTAAAGATTGGTATGGATTGTGCGGCTTCTGAGTTCCATAAGAATGGGAAATATGATTTAAATTTCAAGAACCCTCATTCTGC]

[+] EMBL CD183803             [TGGGAGTGTCTTTGGCTGTGTGCAAAGCTGGTGCAGCTGAAGATGTTATAATGCCTGCTCCAGCATTCAATGTCATTAATGGTGGCAGTCATGCCGGCAACAAGCTAGCCATGCAAGAATTTATGATTCTGCCTACTGGGGCCAGCTCTTTCACTGAAGCAATGCAAATCGGTACTGAGGTGTACCACAATTTAAAAGCTGTTATCAAACGTGAATATGGACTGGATGCATGCAACGTTGGTGACGAAGGTGGTTTTGCACCGAATATACAGGATAATATGAAAGGTCTTCANCTGCTTGAAGAGGCCATAAAAATTGCTGGCTATACTGGGAAAGTAAAGATTGGTATGGATTGTGCGGCTTCTGAGTTCCATAAGAATGGGAAATATGATTTAAATTTCAAGAACCCTCATTCTGC]




>consensus_465#0
TGGGAGTGTCTTTGGCTGTGTGCAAAGCTGGTGCAGCTGAAGATGTTATAATGCCTGCTC
CAGCATTCAATGTCATTAATGGTGGCAGTCATGCCGGCAACAAGCTAGCCATGCAAGAAT
TTATGATTCTGCCTACTGGGGCCAGCTCTTTCACTGAAGCAATGCAAATCGGTACTGAGG
TGTACCACAATTTAAAAGCTGTTATCAAACGTGAATATGGACTGGATGCATGCAACGTTG
GTGACGAAGGTGGTTTTGCACCGAATATACAGGATAATATGAAAGGTCTTCANCTGCTTG
AAGAGGCCATAAAAATTGCTGGCTATACTGGGAAAGTAAAGATTGGTATGGATTGTGCGG
CTTCTGAGTTCCATAAGAATGGGAAATATGATTTAAATTTCAAGAACCCTCATTCTGC

consensusID : consensus_465#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [CGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAACCTTGTTTTAATTAGACAGTCGGATTCCCCTGGGTCCGTGCCAGTTCTGACATTAAGCCGATACTCGCGCCACACCAGTGGAATTACACACGTTTGACACATCGTGGAACATGTCCTCGCTCGTTGATATATGCTATAGTGTAACATACTGTAACCGCCCATAATCGTGCCGGTTCATATTCCATTACTCTTATTTTAATTAGACA]

[+] EMBL CD148100             [CGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAACCTTGTTTTAATTAGACAGTCGGATTCCCCTGGGTCCGTGCCAGTTCTGACATTAAGCCGATACTCGCGCCACACCAGTGGAATTACACACGTTTGACACATCGTGGAACATGTCCTCGCTCGTTGATATATGCTATAGTGTAACATACTGTAACCGCCCATAATCGTGCCGGTTCATATTCCATTACTCTTATTTTAATTAGACA]




>consensus_465#1
CGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTG
AAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAACCTTGTTTTAATTAGACAGTCGG
ATTCCCCTGGGTCCGTGCCAGTTCTGACATTAAGCCGATACTCGCGCCACACCAGTGGAA
TTACACACGTTTGACACATCGTGGAACATGTCCTCGCTCGTTGATATATGCTATAGTGTA
ACATACTGTAACCGCCCATAATCGTGCCGGTTCATATTCCATTACTCTTATTTTAATTAG
ACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_465#0      TGGGAGTGTCTTTGGCTGTGTGCAAAGCTGGTGCAGCTGAAGATGTTATAATGCCTGCTC 60
consensus_465#1      ---------------------------------------------------CGCTTGACG 9
                                                                         ** **   

consensus_465#0      CAGCATTCAA--TGTCATTAATGGTGGCAGTCATGCCGGCAACAAGCTAGCCATGCAAGA 118
consensus_465#1      CAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAA--CAGC--TGAAACC 65
                     ** * *  **  **** *     ** **   *    ** **  **   ***  ** **  

consensus_465#0      ATTTATGATTCTGCCTACTGGGGCCAGCTCTTTCACTGAAGCAATGCAAATCGGTACTGA 178
consensus_465#1      GCCCACGAT-----CGACCCGGGTCAGAG--TCCAGTAACCTTGTTTTAATTAG-ACAGT 117
                         * ***     * **  *** ***    * ** * *     *   ***  * ** * 

consensus_465#0      GGTGTACCACAATTTAAAAGCTGTTATCAAACGTGAATATGGACTGGATGCATGCAACGT 238
consensus_465#1      CGGATTCCCCTG------GGTCCGTGCCAGTTCTGA-CATTAAGCCGATACTCGCGCC-- 168
                      *  * ** *         *    *  **    ***  **  *   *** *  **  *  

consensus_465#0      TGGTGACGAAGGTGGTTTTGCACCGAATATACAGGATAATATGAAAGGTCTTCANCTGCT 298
consensus_465#1      -----ACACCAGTGGAATTACACACGTTTGACAC-ATCGTGGAACATGTCCTCGCTCGTT 222
                          **    ****  ** ***    *  ***  **  *   * * *** **    * *

consensus_465#0      TGAAGAGGCCATAAAAATTGCTGGCTATACTGGGAAAGTAAAGATTGGTATGGATTGTGC 358
consensus_465#1      GATATATGCTATA------GTGTAACATACTGTAACCGCCCATAATCGTGCCGGTT-CAT 275
                        * * ** ***      *      ******  *  *   * * * **   * **    

consensus_465#0      GGCTTCTGAGTTCCATAAGAATGGGAAATATGATTTAAATTTCAAGAACCCTCATTCTGC 418
consensus_465#1      ATTCCATTACTCTTATTTTAATTAGACA-------------------------------- 303
                           * * *   **   ***  ** *