cluster # 4650

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Schistosoma mansoni
cluster # 4650 cluster # 4650 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4650#0 length = 560 sequences # 2

consensus_4650#1 length = 278 sequences # 1

consensusID : consensus_4650#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 560
fasta sequence

                              [CGTGCGCAGACTTGAGCAACTGTCACGCAAGGCGCGCCAGACGCAGATCTTCATCGAAACGCCGTACCGGAATCAGGCGATGCTCGACAACGCTGGTCGCGACCTGCGCGCCGTCGACGCAAGATCTGCGTCCCGGCCCGATCCTGACCCTCGCGACCGAGACGATCGCGAGCCGAACCGTGACCGACTTGGAAAAAGGCGCCTGCGC-NAATCTGCACAAGCGCCCCGCCAATCTTCCTGCTGCTCGCGAACTGAAGCCGAAACCGGCGAACCGGTGACGCGAGGCGGGCCATTGCGGCCCGCCTTGCAAGGTCAAGCGCAGGCTCCGANTTGCGCCGCCGGCCGTCAGCGCCTTCATCGCGGCGCCGCCACGGCCGCGCGAACTTGCGCGCGACACGGTTCGTCAGGCTTTCCTTCACCGTGTAGTCGACGAGATCGGGCGCCTTCAGCACGTCGCGGGCAGCCGTATCGGTNTGCCCGTAGCCGTCCGCGAGTCCGAGCTCGACGTTCTTCTCGCCGGTCCAGAACAGGCCCGAGAACATGTCGGGCGTCTCGTGCAG]

[+] EMBL SM127                [CGTGCGCAGACTTGAGCAACTGTCACGCAAGGCGCGCCAGACGCAGATCTTCATCGAAACGCCGTACCGGAATCAGGCGATGCTCGACAACGCTGGTCGCGACCTGCGCGCCGTCGACGCAAGATCTGCGTCCCGGCCCGATCCTGACCCTCGCGACCGAGACGATCGCGAGCCGAACCGTGACCGACTTGGAAAAAGGCGCCTGCGC NAATCTGCACAAGCGCCCCGCCAATCTTCCTGCTGCTCGCGAACTGAAGCCGAAACCGGCGAACCGGTGACGCGAGGCGGGCCATTGCGGCCCGCCTTGCAAGGTCAAGCGCAGGCTCCGANTTGCGCCGCCGGCCGTCAGCGCCTTCATCGCGGCGCCGCCACGGCCGCGCGAACTTGCGCGCGACACGGTTCGTCAGGCTTTCCTTCACCGTGTAGTCGACGAGATCGGGCGCCTTCAGCACGTCGCGGGCAGCCGTATCGGTNTGCCCGTAGCCGTCCGCGAGTCCGAGCTCGACGTTCTTCTCGCCGGTCCAGAACAGGCCCGAGAACATGTCGGGCGTCTCGTGCAG]
[+] EMBL SMW754               [           TTGAGCAACTGTCACGCAAGGCGCGCCAGACGCAGATCTTCATCGAAACGCCGTACCGGAATCAGGCGATGCTCGAC ACGCTGGTCGCGACCTGCGCGCCGTCGACGC AGATCTGCGTCNCNG CCGAT CTGACCCTCGCGACCGAGACGATCGCGAGCCGCACCGTGACCGAC TGGAAAAAGGCGCCTGCGCGAAATCTGCACAAGCGCCCCGCC                                                                                                                                                                                                                                                                                                                                          ]




>consensus_4650#0
CGTGCGCAGACTTGAGCAACTGTCACGCAAGGCGCGCCAGACGCAGATCTTCATCGAAAC
GCCGTACCGGAATCAGGCGATGCTCGACAACGCTGGTCGCGACCTGCGCGCCGTCGACGC
AAGATCTGCGTCCCGGCCCGATCCTGACCCTCGCGACCGAGACGATCGCGAGCCGAACCG
TGACCGACTTGGAAAAAGGCGCCTGCGCNAATCTGCACAAGCGCCCCGCCAATCTTCCTG
CTGCTCGCGAACTGAAGCCGAAACCGGCGAACCGGTGACGCGAGGCGGGCCATTGCGGCC
CGCCTTGCAAGGTCAAGCGCAGGCTCCGANTTGCGCCGCCGGCCGTCAGCGCCTTCATCG
CGGCGCCGCCACGGCCGCGCGAACTTGCGCGCGACACGGTTCGTCAGGCTTTCCTTCACC
GTGTAGTCGACGAGATCGGGCGCCTTCAGCACGTCGCGGGCAGCCGTATCGGTNTGCCCG
TAGCCGTCCGCGAGTCCGAGCTCGACGTTCTTCTCGCCGGTCCAGAACAGGCCCGAGAAC
ATGTCGGGCGTCTCGTGCAG

consensusID : consensus_4650#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 278
fasta sequence

                              [CGGCCCGCNGCCTGCAGGCAAGCGCAGGCTGACCGATGCGCCGCCGGCCGTCAGCGCCTTCAATCGGGCGCCGCCGACGGCCGCGCCGAACTTGCGCGCGACACGGTTCGTCAGGCTTTCCTTCACCGTGTAGTCGACGAGATCGGGCGCCTTCAGCACGTCGCGGGGCACCGTATCGGTCGTGCCGTAGCCGTCCGCGAAGTCCGAGCTCGACGCTCTTCTCGCCGGTCCANAACAGCCCGAGAACATGTCGGCAGTCTCGTGCACTTGCCGCGGCC]

[-] EMBL SM128                [CGGCCCGCNGCCTGCAGGCAAGCGCAGGCTGACCGATGCGCCGCCGGCCGTCAGCGCCTTCAATCGGGCGCCGCCGACGGCCGCGCCGAACTTGCGCGCGACACGGTTCGTCAGGCTTTCCTTCACCGTGTAGTCGACGAGATCGGGCGCCTTCAGCACGTCGCGGGGCACCGTATCGGTCGTGCCGTAGCCGTCCGCGAAGTCCGAGCTCGACGCTCTTCTCGCCGGTCCANAACAGCCCGAGAACATGTCGGCAGTCTCGTGCACTTGCCGCGGCC]




>consensus_4650#1
CGGCCCGCNGCCTGCAGGCAAGCGCAGGCTGACCGATGCGCCGCCGGCCGTCAGCGCCTT
CAATCGGGCGCCGCCGACGGCCGCGCCGAACTTGCGCGCGACACGGTTCGTCAGGCTTTC
CTTCACCGTGTAGTCGACGAGATCGGGCGCCTTCAGCACGTCGCGGGGCACCGTATCGGT
CGTGCCGTAGCCGTCCGCGAAGTCCGAGCTCGACGCTCTTCTCGCCGGTCCANAACAGCC
CGAGAACATGTCGGCAGTCTCGTGCACTTGCCGCGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4650#0      CGTGCGCAGACTTGAGCAACTGTCACGCAAGGCGCGCCAGACGCAGATCTTCATCGAAAC 60
consensus_4650#1      ------------------------------------------------------------
                                                                                  

consensus_4650#0      GCCGTACCGGAATCAGGCGATGCTCGACAACGCTGGTCGCGACCTGCGCGCCGTCGACGC 120
consensus_4650#1      ------------------------------------------------------------
                                                                                  

consensus_4650#0      AAGATCTGCGTCCCGGCCCGATCCTGACCCTCGCGACCGAGACGATCGCGAGCCGAACCG 180
consensus_4650#1      ------------------------------------------------------------
                                                                                  

consensus_4650#0      TGACCGACTTGGAAAAAGGCGCCTGCGCNAATCTGCACAAGCGCCCCGCCAATCTTCCTG 240
consensus_4650#1      ------------------------------------------------------------
                                                                                  

consensus_4650#0      CTGCTCGCGAACTGAAGCCGAAACCGGCGAACCGGTGACGCGAGGCGGGCCATTGCGGCC 300
consensus_4650#1      -------------------------------------------------------CGGCC 5
                                                                             *****

consensus_4650#0      CGCCTTGCAAGGTCAAGCGCAGGCTCCGANTTGCGCCGCCGGCCGTCAGCGCCTTCATCG 360
consensus_4650#1      CGCNGCCTGCAGGCAAGCGCAGGCTGACCGATGCGCCGCCGGCCGTCAGCGCCTTCAATC 65
                      ***        * ************      **************************   

consensus_4650#0      CGGCGCCGCC-ACGGCCGCGC-GAACTTGCGCGCGACACGGTTCGTCAGGCTTTCCTTCA 418
consensus_4650#1      GGGCGCCGCCGACGGCCGCGCCGAACTTGCGCGCGACACGGTTCGTCAGGCTTTCCTTCA 125
                       ********* ********** **************************************

consensus_4650#0      CCGTGTAGTCGACGAGATCGGGCGCCTTCAGCACGTCGCGGGCAGCCGTATCGGTNTGCC 478
consensus_4650#1      CCGTGTAGTCGACGAGATCGGGCGCCTTCAGCACGTCGCGGGGCACCGTATCGGTCGTGC 185
                      ******************************************   **********    *

consensus_4650#0      CGTAGCCGTCCGCGA-GTCCGAGCTCGACGTTCTTCTCGCCGGTCCAGAACAGGCCCGAG 537
consensus_4650#1      CGTAGCCGTCCGCGAAGTCCGAGCTCGACGCTCTTCTCGCCGGTCCANAACAG-CCCGAG 244
                      *************** ************** **************** ***** ******

consensus_4650#0      AACATGTCGGGCGTCTCGTGCAG----------- 560
consensus_4650#1      AACATGTCGGCAGTCTCGTGCACTTGCCGCGGCC 278
                      **********  **********