cluster # 4658

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Schistosoma mansoni
cluster # 4658 cluster # 4658 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4658#0 length = 584 sequences # 2

consensus_4658#1 length = 454 sequences # 1

consensusID : consensus_4658#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 584
fasta sequence

                              [GACCTCGGTCACCCTGGCCAAGGGTGGNAAATCAGGACAGGACGTATTGAAGCAAGAAATGAATTAAGAAAAAATAACAAATGATACGAAAGACATCGAGATGCTACACCTGAAGTAAACAAATATATGAAAAAGGATGACAAAAGAAATGATGCAAAGGCGCTTGAGAATGTAACAACGAAACAAGTAAGAAATAACTCTACATCTTTCAAGGTGAGGGTGAATAAAGTTTGCAAAATATACAAGATTACAGAATCTGGATTTGTGATGTAGTCTTTTTTATGATGAAAGAAGACAAAGCAAACGGCACGAATGAATTTTCCAACACCTAACATTCCAGAAAATAAATAAGTTTGTCTCGTAAAACGTTAACAAGGATCAGTCAGCCGGGGGAATGGTTTTTCACAATTTGGAAAGCTTGCATAGTAGGAAAAACAGACCATAGAAAGTAAGAAAGGCAAATTGAAGGAAGACAGTGAACGCAGAAAAAGCATAAGTTCAGTATTTTTAATGACTTCAGAAATTAACAGTTCAAGAAACTATTATTTGCTGCTCCTAGAATATTTCAAAACATAATCACTTAA]

[+] EMBL CD167841             [GACCTCGGTCACCCTGGCCAAGGGTGGNAAATCAGGACAGGACGTATTGAAGCAAGAAATGAATTAAGAAAAAATAACAAATGATACGAAAGACATCGAGATGCTACACCTGAAGTAAACAAATATATGAAAAAGGATGACAAAAGAAATGATGCAAAGGCGCTTGAGAATGTAACAACGAAACAAGTAAGAAATAACTCTACATCTTTCAAGGTGAGGGTGAATAAAGTTTGCAAAATATACAAGATTACAGAATCTGGATTTGTGATGTAGTCTTTTTTATGATGAAAGAAGACAAAGCAAACGGCACGAATGAATTTTCCAACACCTAACATTCCAGAAAATAAATAAGTTTGTCTCGTAAAACGTTAACAAGGATCAGTCAGCCGGGGGAATGGTTTTTCACAATTTGGAAAGCTTGCATAGTAGGAAAAACAGACCATAGAAAGTAAGAAAGGCAAATTGAAGGAAGACAGTGAACGCAGAAAAAGCATAAGTTCAGTATTTTTAATGACTTCAGAAATTAACAGTTCAAGAAACTATTATTTGCTGCTCCTAGAATATTTCAAAACATAATCACTTAA]
[+] EMBL CD181920             [                                                                                                                                                                                                                                TAAAGTTTGCAAAATATACAAGATTACAGAATCTGGATTTGTGATGTAGTCTTTTTTATGATGAAAGAAGACAAAGCAAACGGCACGAATGAATTTTCCAACACCTAACATTCCAGAAAATAAATAAGTTTGTCTCGTAAAACGTTAACAAGGATCAGTCAGCCGGGGGAATGGTTTTTCACAATTTGGAAAGCTTGCATAGTAGGAAAAACAGACCATAGAAAGTAAGAAAGGCAAATTGAAGGAAGACAGTGAACGCAGAANAAGCATAAGTTCAGTATTTTTAATG                                                                       ]




>consensus_4658#0
GACCTCGGTCACCCTGGCCAAGGGTGGNAAATCAGGACAGGACGTATTGAAGCAAGAAAT
GAATTAAGAAAAAATAACAAATGATACGAAAGACATCGAGATGCTACACCTGAAGTAAAC
AAATATATGAAAAAGGATGACAAAAGAAATGATGCAAAGGCGCTTGAGAATGTAACAACG
AAACAAGTAAGAAATAACTCTACATCTTTCAAGGTGAGGGTGAATAAAGTTTGCAAAATA
TACAAGATTACAGAATCTGGATTTGTGATGTAGTCTTTTTTATGATGAAAGAAGACAAAG
CAAACGGCACGAATGAATTTTCCAACACCTAACATTCCAGAAAATAAATAAGTTTGTCTC
GTAAAACGTTAACAAGGATCAGTCAGCCGGGGGAATGGTTTTTCACAATTTGGAAAGCTT
GCATAGTAGGAAAAACAGACCATAGAAAGTAAGAAAGGCAAATTGAAGGAAGACAGTGAA
CGCAGAAAAAGCATAAGTTCAGTATTTTTAATGACTTCAGAAATTAACAGTTCAAGAAAC
TATTATTTGCTGCTCCTAGAATATTTCAAAACATAATCACTTAA

consensusID : consensus_4658#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [GCAAGGAAATGTGGTGCATAGACTACACTGCAATCATATCCAGTAAATTATCAATCAAACAGGACGTATTGAAGCAAGAAATGAATTAAGAAAAAATAACAAATGATACGAAAAACATCGAGATGCTACACCTGAAGTAAACAAATATATGAAAAAGGATGACAAAAGAAATGATGCAAAGGCGCTTGAGAATGTAACAACGAAACAAGTAAGAAATAACTCTACATCTTTCAAGGTGAGGGTGAATAAAGTTTGCAAAATATACAAGATTACAGAATCTGGATTTGTGATGTAGTCTTTTTTATGATGAAAGAAGACAAAGCAAACGGCACGAATGAATTTTCCAACACCTAACATTCCAGAAAATAAATAAGTTTGTCTCGTAAAACGTTAACAAGGATCAGTCAGCCGGGGGAATGGTTTTTCACAATTTGGAAAGCTTGCATAGTAGGAA]

[-] EMBL CD200474             [GCAAGGAAATGTGGTGCATAGACTACACTGCAATCATATCCAGTAAATTATCAATCAAACAGGACGTATTGAAGCAAGAAATGAATTAAGAAAAAATAACAAATGATACGAAAAACATCGAGATGCTACACCTGAAGTAAACAAATATATGAAAAAGGATGACAAAAGAAATGATGCAAAGGCGCTTGAGAATGTAACAACGAAACAAGTAAGAAATAACTCTACATCTTTCAAGGTGAGGGTGAATAAAGTTTGCAAAATATACAAGATTACAGAATCTGGATTTGTGATGTAGTCTTTTTTATGATGAAAGAAGACAAAGCAAACGGCACGAATGAATTTTCCAACACCTAACATTCCAGAAAATAAATAAGTTTGTCTCGTAAAACGTTAACAAGGATCAGTCAGCCGGGGGAATGGTTTTTCACAATTTGGAAAGCTTGCATAGTAGGAA]




>consensus_4658#1
GCAAGGAAATGTGGTGCATAGACTACACTGCAATCATATCCAGTAAATTATCAATCAAAC
AGGACGTATTGAAGCAAGAAATGAATTAAGAAAAAATAACAAATGATACGAAAAACATCG
AGATGCTACACCTGAAGTAAACAAATATATGAAAAAGGATGACAAAAGAAATGATGCAAA
GGCGCTTGAGAATGTAACAACGAAACAAGTAAGAAATAACTCTACATCTTTCAAGGTGAG
GGTGAATAAAGTTTGCAAAATATACAAGATTACAGAATCTGGATTTGTGATGTAGTCTTT
TTTATGATGAAAGAAGACAAAGCAAACGGCACGAATGAATTTTCCAACACCTAACATTCC
AGAAAATAAATAAGTTTGTCTCGTAAAACGTTAACAAGGATCAGTCAGCCGGGGGAATGG
TTTTTCACAATTTGGAAAGCTTGCATAGTAGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4658#0      --------------------GACCTCG--GTCACCCTGGCCAA-GGGTGGNAAATCAGGA 37
consensus_4658#1      GCAAGGAAATGTGGTGCATAGACTACACTGCAATCATATCCAGTAAATTATCAATCAA-A 59
                                          ***  *   *  * * *  ***     *    *****  *

consensus_4658#0      CAGGACGTATTGAAGCAAGAAATGAATTAAGAAAAAATAACAAATGATACGAAAGACATC 97
consensus_4658#1      CAGGACGTATTGAAGCAAGAAATGAATTAAGAAAAAATAACAAATGATACGAAAAACATC 119
                      ****************************************************** *****

consensus_4658#0      GAGATGCTACACCTGAAGTAAACAAATATATGAAAAAGGATGACAAAAGAAATGATGCAA 157
consensus_4658#1      GAGATGCTACACCTGAAGTAAACAAATATATGAAAAAGGATGACAAAAGAAATGATGCAA 179
                      ************************************************************

consensus_4658#0      AGGCGCTTGAGAATGTAACAACGAAACAAGTAAGAAATAACTCTACATCTTTCAAGGTGA 217
consensus_4658#1      AGGCGCTTGAGAATGTAACAACGAAACAAGTAAGAAATAACTCTACATCTTTCAAGGTGA 239
                      ************************************************************

consensus_4658#0      GGGTGAATAAAGTTTGCAAAATATACAAGATTACAGAATCTGGATTTGTGATGTAGTCTT 277
consensus_4658#1      GGGTGAATAAAGTTTGCAAAATATACAAGATTACAGAATCTGGATTTGTGATGTAGTCTT 299
                      ************************************************************

consensus_4658#0      TTTTATGATGAAAGAAGACAAAGCAAACGGCACGAATGAATTTTCCAACACCTAACATTC 337
consensus_4658#1      TTTTATGATGAAAGAAGACAAAGCAAACGGCACGAATGAATTTTCCAACACCTAACATTC 359
                      ************************************************************

consensus_4658#0      CAGAAAATAAATAAGTTTGTCTCGTAAAACGTTAACAAGGATCAGTCAGCCGGGGGAATG 397
consensus_4658#1      CAGAAAATAAATAAGTTTGTCTCGTAAAACGTTAACAAGGATCAGTCAGCCGGGGGAATG 419
                      ************************************************************

consensus_4658#0      GTTTTTCACAATTTGGAAAGCTTGCATAGTAGGAAAAACAGACCATAGAAAGTAAGAAAG 457
consensus_4658#1      GTTTTTCACAATTTGGAAAGCTTGCATAGTAGGAA------------------------- 454
                      ***********************************                         

consensus_4658#0      GCAAATTGAAGGAAGACAGTGAACGCAGAAAAAGCATAAGTTCAGTATTTTTAATGACTT 517
consensus_4658#1      ------------------------------------------------------------
                                                                                  

consensus_4658#0      CAGAAATTAACAGTTCAAGAAACTATTATTTGCTGCTCCTAGAATATTTCAAAACATAAT 577
consensus_4658#1      ------------------------------------------------------------
                                                                                  

consensus_4658#0      CACTTAA 584
consensus_4658#1      -------