cluster # 4674

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4674 cluster # 4674 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4674#0 length = 318 sequences # 2

consensus_4674#1 length = 304 sequences # 1

consensusID : consensus_4674#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 318
fasta sequence

                              [TCCATTTGATGAATATCAGGATCTTATGCCATTCATGTATAACGGGGGTATTTTGGACTTGATCTACACTTATCTTATGCCAGAAGTTGCCTCTCGTGATATTCGTCTTACATTTGAAGCGTTACGTTTATTAGCTAATCTTCTTTGTCATCGGTGTGTTTATTTAGAATTTGTTGAACAAGATGGTTTACAATCTGTGCTTAAAGTGCCAAGGCCATCAGTAGCCGCTACAGCTGTGGGTGGCAGAATTACTGTGGGTGGCAGAATTGCTGTGGGTGGCAGAATTGCTGTGGGTGGCAGAATTGCGTGGCATAATTG]

[+] EMBL CD112041             [TCCATTTGATGAATATCAGGATCTTATGCCATTCATGTATAACGGGGGTATTTTGGACTTGATCTACACTTATCTTATGCCAGAAGTTGCCTCTCGTGATATTCGTCTTACATTTGAAGCGTTACGTTTATTAGCTAATCTTCTTTGTCATCGGTGTGTTTATTTAGAATTTGTTGAACAAGATGGTTTACAATCTGTGCTTAAAGTGCCAAGGCCATCAGTAGCCGCTACAGCTGTGGGTGGCAGAATTACTGTGGGTGGCAGAATTGCTGTGGGTGGCAGAATTGCTGTGGGTGGCAGAATTGCGTGGCATAATTG]
[+] EMBL CD112630             [           AATATCAGGATCTTATGCCATTCATGTATAACGGGGGTATTTTGGACTTGATCTACACTTATCTTATGCCAGAAGTTGCCTCTCGTGATATTCGTCTTACATTTGAAGCGTTACGTTTATTAGCTAATCTTCTTTGTCATCGGTGTGTTTATTTAGAATTTGTTGAACAAGATGGTTTACAATCTGTGCTTAAAGTGCCAAGGCCATCAGT                                                                                                ]




>consensus_4674#0
TCCATTTGATGAATATCAGGATCTTATGCCATTCATGTATAACGGGGGTATTTTGGACTT
GATCTACACTTATCTTATGCCAGAAGTTGCCTCTCGTGATATTCGTCTTACATTTGAAGC
GTTACGTTTATTAGCTAATCTTCTTTGTCATCGGTGTGTTTATTTAGAATTTGTTGAACA
AGATGGTTTACAATCTGTGCTTAAAGTGCCAAGGCCATCAGTAGCCGCTACAGCTGTGGG
TGGCAGAATTACTGTGGGTGGCAGAATTGCTGTGGGTGGCAGAATTGCTGTGGGTGGCAG
AATTGCGTGGCATAATTG

consensusID : consensus_4674#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [GGATTATGAAGACTGAGACATCTGAGTGGAAGCGCAGAATACAATGAACAGGTTGGATGCAACTAGACGATTTGGACTTCGCAGATGACCTGATCATCCTATTCTATACACACAAACATATGCAGATGAAGACAACCAGCGCAGCAGCAGCCTCTGTATCAGTATACCTCAACATACACAAAGGAAAAAGCAAGATCCTCAAATACAACATAGAGAACACCAACACAATCACACTTGATGGAGAAACTCTGGCAGAGGTGGAAACTTTCAACTACCTCGGCAACATCATCGATGAATGTAGAGG]

[+] EMBL CD164916             [GGATTATGAAGACTGAGACATCTGAGTGGAAGCGCAGAATACAATGAACAGGTTGGATGCAACTAGACGATTTGGACTTCGCAGATGACCTGATCATCCTATTCTATACACACAAACATATGCAGATGAAGACAACCAGCGCAGCAGCAGCCTCTGTATCAGTATACCTCAACATACACAAAGGAAAAAGCAAGATCCTCAAATACAACATAGAGAACACCAACACAATCACACTTGATGGAGAAACTCTGGCAGAGGTGGAAACTTTCAACTACCTCGGCAACATCATCGATGAATGTAGAGG]




>consensus_4674#1
GGATTATGAAGACTGAGACATCTGAGTGGAAGCGCAGAATACAATGAACAGGTTGGATGC
AACTAGACGATTTGGACTTCGCAGATGACCTGATCATCCTATTCTATACACACAAACATA
TGCAGATGAAGACAACCAGCGCAGCAGCAGCCTCTGTATCAGTATACCTCAACATACACA
AAGGAAAAAGCAAGATCCTCAAATACAACATAGAGAACACCAACACAATCACACTTGATG
GAGAAACTCTGGCAGAGGTGGAAACTTTCAACTACCTCGGCAACATCATCGATGAATGTA
GAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4674#0      TCCATTTGATGAATATCAGGATCTT---ATGCCATTCATGTATAACGGGGGTATTTTGGA 57
consensus_4674#1      ---GGATTATGAAGACTGAGACATCTGAGTGGAAGCGCAGAATACAATGAACAGGTTGGA 57
                            * ***** *    **  *     **  *     * ***    *   *  *****

consensus_4674#0      CTTGATCTACACTTATCTTATGCCAGAAGTTGCCTC-TCGTGATATTCGTCTTACATTTG 116
consensus_4674#1      TGCAA-CTAGACGATTTGGACTTCGCAGATGACCTGATCATCCTATTCTATACACAC--- 113
                          * *** **   *   *   *  *  *  ***  ** *  *****     ***    

consensus_4674#0      AAGCGTTACGTTTATTAGCTAATCTTCTTTGTCATCGGTGTGTTTATT--TAGAATTTGT 174
consensus_4674#1      AAACAT-ATGCAGATGAAGACAACCAGCGCAGCAGCAGCCTCTGTATCAGTATACCTCAA 172
                      ** * * * *   ** *    * *        ** * *  * * ***   ** *  *   

consensus_4674#0      TGAACAAGATGGTTTACAATCTGTGCTTAAA-GTGCCAAGGCCATCAGTAGCCGCTACAG 233
consensus_4674#1      CATACACAAAGGAAAAAGCAAGATCCTCAAATACAACATAGAGAACACCAAC-ACAATCA 231
                         ***  * **   *       * ** ***     **  *  * **  * *  * *   

consensus_4674#0      CTGTGGGTGGCAGAATTACTGTGGGTGGCAGAATTGCTGTGGGTGGCAGAATTGCTGTGG 293
consensus_4674#1      CACTTGATGGAGAAACTCTGGCAGAGGTGGAAACTTTCAACTACCTCGGCAACATCATCG 291
                      *  * * ***   ** *   *  *  *    ** *           * * *      * *

consensus_4674#0      GTGGCAGAATTGCGTGGCATAATTG 318
consensus_4674#1      ATGAATGTAGAGG------------ 304
                       **   * *  *