These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4674#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 318 fasta sequence [TCCATTTGATGAATATCAGGATCTTATGCCATTCATGTATAACGGGGGTATTTTGGACTTGATCTACACTTATCTTATGCCAGAAGTTGCCTCTCGTGATATTCGTCTTACATTTGAAGCGTTACGTTTATTAGCTAATCTTCTTTGTCATCGGTGTGTTTATTTAGAATTTGTTGAACAAGATGGTTTACAATCTGTGCTTAAAGTGCCAAGGCCATCAGTAGCCGCTACAGCTGTGGGTGGCAGAATTACTGTGGGTGGCAGAATTGCTGTGGGTGGCAGAATTGCTGTGGGTGGCAGAATTGCGTGGCATAATTG] [+] EMBL CD112041 [TCCATTTGATGAATATCAGGATCTTATGCCATTCATGTATAACGGGGGTATTTTGGACTTGATCTACACTTATCTTATGCCAGAAGTTGCCTCTCGTGATATTCGTCTTACATTTGAAGCGTTACGTTTATTAGCTAATCTTCTTTGTCATCGGTGTGTTTATTTAGAATTTGTTGAACAAGATGGTTTACAATCTGTGCTTAAAGTGCCAAGGCCATCAGTAGCCGCTACAGCTGTGGGTGGCAGAATTACTGTGGGTGGCAGAATTGCTGTGGGTGGCAGAATTGCTGTGGGTGGCAGAATTGCGTGGCATAATTG] [+] EMBL CD112630 [ AATATCAGGATCTTATGCCATTCATGTATAACGGGGGTATTTTGGACTTGATCTACACTTATCTTATGCCAGAAGTTGCCTCTCGTGATATTCGTCTTACATTTGAAGCGTTACGTTTATTAGCTAATCTTCTTTGTCATCGGTGTGTTTATTTAGAATTTGTTGAACAAGATGGTTTACAATCTGTGCTTAAAGTGCCAAGGCCATCAGT ] consensusID : consensus_4674#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [GGATTATGAAGACTGAGACATCTGAGTGGAAGCGCAGAATACAATGAACAGGTTGGATGCAACTAGACGATTTGGACTTCGCAGATGACCTGATCATCCTATTCTATACACACAAACATATGCAGATGAAGACAACCAGCGCAGCAGCAGCCTCTGTATCAGTATACCTCAACATACACAAAGGAAAAAGCAAGATCCTCAAATACAACATAGAGAACACCAACACAATCACACTTGATGGAGAAACTCTGGCAGAGGTGGAAACTTTCAACTACCTCGGCAACATCATCGATGAATGTAGAGG] [+] EMBL CD164916 [GGATTATGAAGACTGAGACATCTGAGTGGAAGCGCAGAATACAATGAACAGGTTGGATGCAACTAGACGATTTGGACTTCGCAGATGACCTGATCATCCTATTCTATACACACAAACATATGCAGATGAAGACAACCAGCGCAGCAGCAGCCTCTGTATCAGTATACCTCAACATACACAAAGGAAAAAGCAAGATCCTCAAATACAACATAGAGAACACCAACACAATCACACTTGATGGAGAAACTCTGGCAGAGGTGGAAACTTTCAACTACCTCGGCAACATCATCGATGAATGTAGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4674#0 TCCATTTGATGAATATCAGGATCTT---ATGCCATTCATGTATAACGGGGGTATTTTGGA 57 consensus_4674#1 ---GGATTATGAAGACTGAGACATCTGAGTGGAAGCGCAGAATACAATGAACAGGTTGGA 57 * ***** * ** * ** * * *** * * ***** consensus_4674#0 CTTGATCTACACTTATCTTATGCCAGAAGTTGCCTC-TCGTGATATTCGTCTTACATTTG 116 consensus_4674#1 TGCAA-CTAGACGATTTGGACTTCGCAGATGACCTGATCATCCTATTCTATACACAC--- 113 * *** ** * * * * * *** ** * ***** *** consensus_4674#0 AAGCGTTACGTTTATTAGCTAATCTTCTTTGTCATCGGTGTGTTTATT--TAGAATTTGT 174 consensus_4674#1 AAACAT-ATGCAGATGAAGACAACCAGCGCAGCAGCAGCCTCTGTATCAGTATACCTCAA 172 ** * * * * ** * * * ** * * * * *** ** * * consensus_4674#0 TGAACAAGATGGTTTACAATCTGTGCTTAAA-GTGCCAAGGCCATCAGTAGCCGCTACAG 233 consensus_4674#1 CATACACAAAGGAAAAAGCAAGATCCTCAAATACAACATAGAGAACACCAAC-ACAATCA 231 *** * ** * * ** *** ** * * ** * * * * consensus_4674#0 CTGTGGGTGGCAGAATTACTGTGGGTGGCAGAATTGCTGTGGGTGGCAGAATTGCTGTGG 293 consensus_4674#1 CACTTGATGGAGAAACTCTGGCAGAGGTGGAAACTTTCAACTACCTCGGCAACATCATCG 291 * * * *** ** * * * * ** * * * * * * consensus_4674#0 GTGGCAGAATTGCGTGGCATAATTG 318 consensus_4674#1 ATGAATGTAGAGG------------ 304 ** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||