cluster # 4678

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Schistosoma mansoni
cluster # 4678 cluster # 4678 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4678#0 length = 672 sequences # 1

consensus_4678#1 length = 330 sequences # 2

consensusID : consensus_4678#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence

                              [CTGGCTGCCCGGGATTCGATGGCCGAACCTGAGTTGGTTCATATCGCCAAACTTGCTGAGCAGGCTGAACGGTATGATGATATGGCTGCAGCTATGAAGCGTTATACTGAGGCATCGGGGAATTTAGGAAACGAAGAACGGAATTTACTATCAGTGGCATATAAAAATGTTGTAGGTGCTCGAAGATCAGCATGGAGAGTAATACATGGAAGCGAAATGAAAGCGGTAAATGACCGTACCAAAAAACAAATTGCAGAGGAATACCGCATTAAAATGGAAAAGGAGTTGAACACAATATGTAATCAGGTTCTGGCTCTTCTTGAAGATTATCTGCTTCCAAATGCAAGTCCCGACGACAGTAAAGTTTTCTTCTTGAAAATGCAAGGCGATTACTACCGGTATCTCGCTGAGGTTGCCACTGATGATGCTCGGACAGAAGTGGTCCAGAAATCATTGGATGCTTACACAAAGGCTACTACGGCTGCCGAAAATTTACCTACCACTCATCCAATTCGTCTTGGTTTAGCTCTCAACTTCTCTGTATTCTTTTACGAAATTCAAAATGATGCTGCTAAGGCGTGCGAGTTAGCCAAAAGTGCTTTCGATTCAGCAATAGCAGAACTAGATCAGCTTCAAGATGATTCCTACAAAGACAGCACACTAATTATGCAA]

[+] EMBL CD180196             [CTGGCTGCCCGGGATTCGATGGCCGAACCTGAGTTGGTTCATATCGCCAAACTTGCTGAGCAGGCTGAACGGTATGATGATATGGCTGCAGCTATGAAGCGTTATACTGAGGCATCGGGGAATTTAGGAAACGAAGAACGGAATTTACTATCAGTGGCATATAAAAATGTTGTAGGTGCTCGAAGATCAGCATGGAGAGTAATACATGGAAGCGAAATGAAAGCGGTAAATGACCGTACCAAAAAACAAATTGCAGAGGAATACCGCATTAAAATGGAAAAGGAGTTGAACACAATATGTAATCAGGTTCTGGCTCTTCTTGAAGATTATCTGCTTCCAAATGCAAGTCCCGACGACAGTAAAGTTTTCTTCTTGAAAATGCAAGGCGATTACTACCGGTATCTCGCTGAGGTTGCCACTGATGATGCTCGGACAGAAGTGGTCCAGAAATCATTGGATGCTTACACAAAGGCTACTACGGCTGCCGAAAATTTACCTACCACTCATCCAATTCGTCTTGGTTTAGCTCTCAACTTCTCTGTATTCTTTTACGAAATTCAAAATGATGCTGCTAAGGCGTGCGAGTTAGCCAAAAGTGCTTTCGATTCAGCAATAGCAGAACTAGATCAGCTTCAAGATGATTCCTACAAAGACAGCACACTAATTATGCAA]




>consensus_4678#0
CTGGCTGCCCGGGATTCGATGGCCGAACCTGAGTTGGTTCATATCGCCAAACTTGCTGAG
CAGGCTGAACGGTATGATGATATGGCTGCAGCTATGAAGCGTTATACTGAGGCATCGGGG
AATTTAGGAAACGAAGAACGGAATTTACTATCAGTGGCATATAAAAATGTTGTAGGTGCT
CGAAGATCAGCATGGAGAGTAATACATGGAAGCGAAATGAAAGCGGTAAATGACCGTACC
AAAAAACAAATTGCAGAGGAATACCGCATTAAAATGGAAAAGGAGTTGAACACAATATGT
AATCAGGTTCTGGCTCTTCTTGAAGATTATCTGCTTCCAAATGCAAGTCCCGACGACAGT
AAAGTTTTCTTCTTGAAAATGCAAGGCGATTACTACCGGTATCTCGCTGAGGTTGCCACT
GATGATGCTCGGACAGAAGTGGTCCAGAAATCATTGGATGCTTACACAAAGGCTACTACG
GCTGCCGAAAATTTACCTACCACTCATCCAATTCGTCTTGGTTTAGCTCTCAACTTCTCT
GTATTCTTTTACGAAATTCAAAATGATGCTGCTAAGGCGTGCGAGTTAGCCAAAAGTGCT
TTCGATTCAGCAATAGCAGAACTAGATCAGCTTCAAGATGATTCCTACAAAGACAGCACA
CTAATTATGCAA

consensusID : consensus_4678#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 330
fasta sequence

                              [GCTTTACTCAACATTATGCTGCATTCTCTGTTTTGATAACAGATAAATAGAAATTAAATAGGAATAATATATTTGTAAAATCTCAGAGAATGAATTTTAATTAAATCCAACGTTTCGCCTGGCAATCTGGTCCAAGCTTTTTCAAGGAATAAATAGAAAGCCTATCTTTCTGAGATTAATTTAATGAGGATCTAGCTACCCACGTCCTATATAACAAACTTTTAACGTAGCATACCTTACTTGTTTACTTTTCAACGGATGTAATGTGTTTACTCAAAAAAGAACACTCAAAAACACTTTATTCTTCTACTTCGATATGCATTTACTAAT]

[+] EMBL CD122586             [GCTTTACTCAACATTATGCTGCATTCTCTGTTTTGATAACAGATAAATAGAAATTAAATAGGAATAATATATTTGTAAAATCTCAGAGAATGAATTTTAATTAAATCCAACGTTTCGCCTGGCAATCTGGTCCAAGCTTTTTCAAGGAATAAATAGAAAGCCTATCTTTCTGAGATTAATTTAATGAGGATCTAGCTACCCACGTCCTATATAACAAACTTTTAACGTAGCATACCTTACTTGTTTACTTTTCAACGGATGTAATGTGTTTACTCAAAAAAGAACACTCAAAAACACTTTATTCTTCTACTTCGATATGCATTTACTAAT]
[+] EMBL CD122620             [GCTTTACTCAACATTATGCTGCATTCTCTGTTTTGATAACAGATAAATAGAAATTAAATAGGAATAATATATTTGTAAAATCTCAGAGAATGAATTTTAATTAAATCCAACGTTTCGCCTGGCAATCTGGTCCAAGCTTTTTCAAGGAATAAATAGAAAGCCTATCTTTCTGAGATTAATTTAATGAGGATCTAGCTACCCACGTCCTATATAACAAACTTTTAACGTAGCATACCTTACTTGTTTACTTTTCAACGGATGTAATGTGTTTACTCAAAAAAGAACACTCAAAAACACTTTATTCTTCTACTTCGATATGCATTTACTAAT]




>consensus_4678#1
GCTTTACTCAACATTATGCTGCATTCTCTGTTTTGATAACAGATAAATAGAAATTAAATA
GGAATAATATATTTGTAAAATCTCAGAGAATGAATTTTAATTAAATCCAACGTTTCGCCT
GGCAATCTGGTCCAAGCTTTTTCAAGGAATAAATAGAAAGCCTATCTTTCTGAGATTAAT
TTAATGAGGATCTAGCTACCCACGTCCTATATAACAAACTTTTAACGTAGCATACCTTAC
TTGTTTACTTTTCAACGGATGTAATGTGTTTACTCAAAAAAGAACACTCAAAAACACTTT
ATTCTTCTACTTCGATATGCATTTACTAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4678#0      CTGGCTGCCCGGGATTCGATGGCCGAACCTGAGTTGGTTCATATCGCCAAACTTGCTGAG 60
consensus_4678#1      ------------------------------------------------------------
                                                                                  

consensus_4678#0      CAGGCTGAACGGTATGATGATATGGCTGCAGCTATGAAGCGTTATACTGAGGCATCGGGG 120
consensus_4678#1      ------------------------------------------------------------
                                                                                  

consensus_4678#0      AATTTAGGAAACGAAGAACGGAATTTACTATCAGTGGCATATAAAAATGTTGTAGGTGCT 180
consensus_4678#1      ------------------------------------------------------------
                                                                                  

consensus_4678#0      CGAAGATCAGCATGGAGAGTAATACATGGAAGCGAAATGAAAGCGGTAAATGACCGTACC 240
consensus_4678#1      ----------------------------------------------------GCTTTACT 8
                                                                           *  *** 

consensus_4678#0      AAAAAACAAATTGCAGAGGAATACCGCATTAAAATGGAAAAGGAGTTGAACACAATATGT 300
consensus_4678#1      CAACATTATGCTGCATTCTCTGTTTTGATAACAGATAAATAGAAATTAAATAGGA---AT 65
                       ** *  *   ****            ** * *    ** ** * ** ** *  *    *

consensus_4678#0      AATCAGGTTCTGGCTCTTCTTGAAGATTATCTGCTTCCAAATGCAA-GTCCCGAC-GACA 358
consensus_4678#1      AATATATTTGTAAAATCTCA-GAGAATGAATTTTAATTAAATCCAACGTTTCGCCTGGCA 124
                      ***    ** *      **  **  ** *  *      **** *** **  ** * * **

consensus_4678#0      GTAAAGTTTT--CTTCTTGAAAATGCAAGGCGATTACTACCGGTATCTCGCTGAGGTTGC 416
consensus_4678#1      ATCTGGTCCAAGCTTTTTCAAGGAATAAATAGAAAGCC-----TATCTTTCTGAGATTAA 179
                       *   **     *** ** **     **   **   *      *****  ***** **  

consensus_4678#0      CACTGATGATGCTCGGACAGAAGTGGTCCAGAAATCATTGGATGCTTACACAAAGGCTAC 476
consensus_4678#1      T-TTAATGAGGATCTAGCTACCCACGTCCTATA--TAACAAACTTTTA-ACGTAGCATAC 235
                         * **** * **   *       ****   *   *    *   *** **  **  ***

consensus_4678#0      TACGGCTGCCGAAAATTTACCTACCACTCATCCAATTCGTCTTGGTTTAGCTCTCAACTT 536
consensus_4678#1      CTTACTTGTTTACTTTTCAACGGATG-TAATGTGTTTACTCAAAAAAGAACACTCAAAAA 294
                            **   *   ** * *      * **    **  **       * * *****   

consensus_4678#0      CTCTGTATTCTTTTACGAAATTCAAAATGATGCTGCTAAGGCGTGCGAGTTAGCCAAAAG 596
consensus_4678#1      CACTTTATTCTTCTAC----TTCGATATGCATTTACTAAT-------------------- 330
                      * ** ******* ***    *** * ***    * ****                     

consensus_4678#0      TGCTTTCGATTCAGCAATAGCAGAACTAGATCAGCTTCAAGATGATTCCTACAAAGACAG 656
consensus_4678#1      ------------------------------------------------------------
                                                                                  

consensus_4678#0      CACACTAATTATGCAA 672
consensus_4678#1      ----------------