cluster # 4679

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Schistosoma mansoni
cluster # 4679 cluster # 4679 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4679#0 length = 536 sequences # 2

consensus_4679#1 length = 399 sequences # 1

consensusID : consensus_4679#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 536
fasta sequence

                              [GAGGTGTCCGTTGGTTCAGAAATCTGGGTGCGTCACGCTAACCAAGTGAAATCAACCTCGATCTCCAACAACGAAACGCAGCATAGATTACGTCTTGATGTTCTGCTAGACACCTTTGAGATCAAAACACCTGAAACAGACAGGACAGTCAAGGTGCAAACGAAGGATGATACAACGTCCTTATTACCTAGAAGATGGACTAACCGGAAGCGCAAACCAGTAAAGCGGTTGCAGTGGACCCTAGCACCAGATCCTACGAATCTGCTCAAGGGGGAGGTGTTAGTGGGACATAGATTGGATGTATGCATGTTTCATGCATGATGGTGTTGCTGCGCGCTGATTGGTTAATTTTAAACCGATCAGCCCGGGCATATTATTGCAGAAAAATCTATAAGCTCCTTACGTATATACTATAAATATATGAACATTATTTAAACTATTGATTGCTGTTCACTTATCATTATTATTTTGAATACAATTTCATTCCTGTTCAACGTGTTCTGATTTAGGGGTCTTGTCGAGTGTCATCGTATAAG]

[-] EMBL CD165743             [GAGGTGTCCGTTGGTTCAGAAATCTGGGTGCGTCACGCTAACCAAGTGAAATCAACCTCGATCTCCAACAACGAAACGCAGCATAGATTACGTCTTGATGTTCTGCTAGACACCTTTGAGATCAAAACACCTGAAACAGACAGGACAGTCAAGGTGCAAACGAAGGATGATACAACGTCCTTATTACCTAGAAGATGGACTAACCGGAAGCGCAAACCAGTAAAGCGGTTGCAG                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD200273             [                                                                     AACGAAACGCAGCATAGATTACCTCTTGATGTTCTGCTAGACACCTTTGAGTTCAAAACACCTGAAACAGACAGGACAGTCAAGGTGCAAACGAAGGATGATACAACGTCCTTATTACCTAGAAGGTGAACTAACCGGAAGCACAAACCAGTAAAGCGGTTGCATTGGACCCTAGCACCAGATCCTACGAATCTGCTCAAGGGGGAGGTGTTAGTGGGACATAGATTGGATGTATGCATGTTTCATGCATGATGGTGTTGCTGCGCGCTGATTGGTTAATTTTAAACCGATCAGCCCGGGCATATTATTGCAGAAAAATCTATAAGCTCCTTACGTATATACTATAAATATATGAACATTATTTAAACTATTGATTGCTGTTCACTTATCATTATTATTTTGAATACAATTTCATTCCTGTTCAACGTGTTCTGATTTAGGGGTCTTGTCGAGTGTCATCGTATAAG]




>consensus_4679#0
GAGGTGTCCGTTGGTTCAGAAATCTGGGTGCGTCACGCTAACCAAGTGAAATCAACCTCG
ATCTCCAACAACGAAACGCAGCATAGATTACGTCTTGATGTTCTGCTAGACACCTTTGAG
ATCAAAACACCTGAAACAGACAGGACAGTCAAGGTGCAAACGAAGGATGATACAACGTCC
TTATTACCTAGAAGATGGACTAACCGGAAGCGCAAACCAGTAAAGCGGTTGCAGTGGACC
CTAGCACCAGATCCTACGAATCTGCTCAAGGGGGAGGTGTTAGTGGGACATAGATTGGAT
GTATGCATGTTTCATGCATGATGGTGTTGCTGCGCGCTGATTGGTTAATTTTAAACCGAT
CAGCCCGGGCATATTATTGCAGAAAAATCTATAAGCTCCTTACGTATATACTATAAATAT
ATGAACATTATTTAAACTATTGATTGCTGTTCACTTATCATTATTATTTTGAATACAATT
TCATTCCTGTTCAACGTGTTCTGATTTAGGGGTCTTGTCGAGTGTCATCGTATAAG

consensusID : consensus_4679#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence

                              [TGGACCCTAGCACCAGATCCTACGAATCTGCTCAAGGGGGAGGTGTTAGTGGGACATAGATTAGATTAAAGCATGTTTCATGCATGATGGTGTTGCTGCGCACTGATTGGCTAGTTCTAAACCGATCAGCACGGGCATATTATTGGAGAAAAATCTAGAAGCTTCTTATGTATATACTATAAATATATGAACGTTATTCAAACTAGTGATTGCTGTTCACATACCATTGTTATTTGTGAATACAATTTCATTCCTGTTCAACGTGTTCTGATTTTGGGGTCTTGTTGAGTGTCATCGTATAAGAATACTAAGCAATAGGAATAGCTGGGTCATTGATATAGCAAAACACAATTATAACAGGTTCTGTCTTCTGAAATCAAATCAATCTCAAGTAAAAGA]

[+] EMBL CD110828             [TGGACCCTAGCACCAGATCCTACGAATCTGCTCAAGGGGGAGGTGTTAGTGGGACATAGATTAGATTAAAGCATGTTTCATGCATGATGGTGTTGCTGCGCACTGATTGGCTAGTTCTAAACCGATCAGCACGGGCATATTATTGGAGAAAAATCTAGAAGCTTCTTATGTATATACTATAAATATATGAACGTTATTCAAACTAGTGATTGCTGTTCACATACCATTGTTATTTGTGAATACAATTTCATTCCTGTTCAACGTGTTCTGATTTTGGGGTCTTGTTGAGTGTCATCGTATAAGAATACTAAGCAATAGGAATAGCTGGGTCATTGATATAGCAAAACACAATTATAACAGGTTCTGTCTTCTGAAATCAAATCAATCTCAAGTAAAAGA]




>consensus_4679#1
TGGACCCTAGCACCAGATCCTACGAATCTGCTCAAGGGGGAGGTGTTAGTGGGACATAGA
TTAGATTAAAGCATGTTTCATGCATGATGGTGTTGCTGCGCACTGATTGGCTAGTTCTAA
ACCGATCAGCACGGGCATATTATTGGAGAAAAATCTAGAAGCTTCTTATGTATATACTAT
AAATATATGAACGTTATTCAAACTAGTGATTGCTGTTCACATACCATTGTTATTTGTGAA
TACAATTTCATTCCTGTTCAACGTGTTCTGATTTTGGGGTCTTGTTGAGTGTCATCGTAT
AAGAATACTAAGCAATAGGAATAGCTGGGTCATTGATATAGCAAAACACAATTATAACAG
GTTCTGTCTTCTGAAATCAAATCAATCTCAAGTAAAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4679#0      GAGGTGTCCGTTGGTTCAGAAATCTGGGTGCGTCACGCTAACCAAGTGAAATCAACCTCG 60
consensus_4679#1      ------------------------------------------------------------
                                                                                  

consensus_4679#0      ATCTCCAACAACGAAACGCAGCATAGATTACGTCTTGATGTTCTGCTAGACACCTTTGAG 120
consensus_4679#1      ------------------------------------------------------------
                                                                                  

consensus_4679#0      ATCAAAACACCTGAAACAGACAGGACAGTCAAGGTGCAAACGAAGGATGATACAACGTCC 180
consensus_4679#1      ------------------------------------------------------------
                                                                                  

consensus_4679#0      TTATTACCTAGAAGATGGACTAACCGGAAGCGCAAACCAGTAAAGCGGTTGCAGTGGACC 240
consensus_4679#1      ------------------------------------------------------TGGACC 6
                                                                            ******

consensus_4679#0      CTAGCACCAGATCCTACGAATCTGCTCAAGGGGGAGGTGTTAGTGGGACATAGATTGGAT 300
consensus_4679#1      CTAGCACCAGATCCTACGAATCTGCTCAAGGGGGAGGTGTTAGTGGGACATAGATTAGAT 66
                      ******************************************************** ***

consensus_4679#0      GTATGCATGTTTCATGCATGATGGTGTTGCTGCGCGCTGATTGGTTAATTTTAAACCGAT 360
consensus_4679#1      TAAAGCATGTTTCATGCATGATGGTGTTGCTGCGCACTGATTGGCTAGTTCTAAACCGAT 126
                        * ******************************* ******** ** ** *********

consensus_4679#0      CAGCCCGGGCATATTATTGCAGAAAAATCTATAAGCTCCTTACGTATATACTATAAATAT 420
consensus_4679#1      CAGCACGGGCATATTATTGGAGAAAAATCTAGAAGCTTCTTATGTATATACTATAAATAT 186
                      **** ************** *********** ***** **** *****************

consensus_4679#0      ATGAACATTATTTAAACTATTGATTGCTGTTCACTTATCATTATTATTT-TGAATACAAT 479
consensus_4679#1      ATGAACGTTATTCAAACTAGTGATTGCTGTTCACATACCATTGTTATTTGTGAATACAAT 246
                      ****** ***** ****** ************** ** **** ****** **********

consensus_4679#0      TTCATTCCTGTTCAACGTGTTCTGATTTAGGGGTCTTGTCGAGTGTCATCGTATAAG--- 536
consensus_4679#1      TTCATTCCTGTTCAACGTGTTCTGATTTTGGGGTCTTGTTGAGTGTCATCGTATAAGAAT 306
                      **************************** ********** *****************   

consensus_4679#0      ------------------------------------------------------------
consensus_4679#1      ACTAAGCAATAGGAATAGCTGGGTCATTGATATAGCAAAACACAATTATAACAGGTTCTG 366
                                                                                  

consensus_4679#0      ---------------------------------
consensus_4679#1      TCTTCTGAAATCAAATCAATCTCAAGTAAAAGA 399