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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2673 fasta sequence
[TTTTCGAAAGTTGATGGGGTTCGACAGAACAATTCTTAAATGAATTTTTTACTACCTACTCTGGTTATTATTTTCGCTCTTAATTGCTGGTCCTTAAAATTTTCCATTTCTGAGTACCCATGGATTAAAGCCTGTCGTGTTTGGGAGAGAGACTGCTCGAAGCCTAATCCAAAACATATACAGCTCACTTACATCAAGTTTTTATACGGAGGTTGTACTCACATAATCGGGAATTTGGTTATATGCGGTCTAGAGAAACTTGAAAATGGATCCGATCCTGATCTTTCTTTTCTTGAAAAGATTGAAGATGTGTCCGGTTATGTGTACATTGGTCAAAACAGTGTTAAAACGATATCATTACCGTCTTTGAAAGTTATTCGCGGTGAACCGGGATATCGTATCATGAATACTAGTGCTGCACTTGTTATTAGTCGAAACAGTCTTGAAATCCTAGATTTACGAAGTTTGACAGCCATTCAACGCAACGATATTGTAGCATTAAATAATCAGTTTTTGTGCAACTTTGGTTTCACGATTGATTGGGAACAGATTTTTGAAGACAACCGTAAACAAATGTTTATACCGGATCGAAAAGAAAAAACAGTTTCTCACGCCGGTTGTGATATTGCTCTACGAAAATACACTGATGATCGTACCAAACATTCCTGTCATGGTTCCTGTCCTGTGGTAAATGGACGAGGTTATTGCTGGGGTCCAAAGCCTGAGATGTGTCAAAAAATGCTAAAATGCGCTAACAATCCTGATAACTATTGTCTTGGTGGTAGAGCGACTACACAACCATGTCTGGAAGAATGCTTGGGTGGATGCGAAACTCGTCCTGGCAATTGTAGAGCATGCAAACATGCTATGAATGATGGCAAATGTGTATCACAATGTCCTCCACCATTGATAGTTAGTCGAGAAGAGAGTAGAACTGTTGCAAATCCAGAATTCAAATATAACTTCCATGACATTTGCGTTAAAAATTGCCCAGCGACAACCAAAACCGAACTTCCTCAATTTTTGTTTCACGATGATCCCTAGTTTGTTCATATTATCTATTCATCGACATGTAAATCTGAATGCTGCATCATCTATTACGCATCAAAAATATTCGATTACTGCAATTAATATTCTATTCCCATTGCACTGTACGCCAGAACATAGAGTTTAGAGCTATTCTCTCAAAGATACACTCTTGTTCGTCACATCCAAGTCAGTCTCACTCGCCGTCATCGATAATTATATGTATTGGTATTTTTACTATGCCTTAATACGGTTTCGCAACAAACGAGGTTGAGCGCATATCCCTCTAACTACACAAACCACGATAGGCTGCATGACCATAAAGGAACACGACTCCGCATATCTCATCTAAGCAGTCACTATCCTGTTCCTCTGGTCATTCTACTAATACATATTTAACGATAACTCAACGCAAGCGACAACGCACACTGACTTCTCATTTTATTATCATTATCAATAGCAGTACAGCAATGAATTTCAACCGTTGATGCAGTTATCATCCTACGACTCGATTATTTTTACCACACACGAACTCCAGGTATGCAAATTCGAATCTACTAATCGCTGATCGACGCTATTTACTTTACTGCGGCTTATCGGAACATATTTCGCTGTTCTTTATCCTCATATTCAGTCAGCACCACAGACCAATTACTGTTATACTCTATTTTCACGATATTTCGATTCGCGCATATGAACATGTTATTTTATCATTCGGACAGTCACTACATAAATGCATGCATGTTAAATTTTTTTGTACGCTTACCAATTTACTCATAATCACATGCTAGCATTTCAATTTTTGTCCGCATCTTGACAATATTCATGTACATTTTTACATAAGTATGACACTTTCGTTTAATACGCTCACCCCACTTGACACTGTAATTTATCAGGTATTGCACCATTTTTTTCCCACATTTTGACGTTATCCACATACCGCTTCAGTGTTATTTTTCGAAAATAGACATTTTTTTTATAAATGTGCTATTTTCTACAAGGGGGCTATGTAGTATCGGTTGTTATGTTAAGCCCATATACTTTATTCTAGTTGCTGGCCAAGCCAATTCACCTGTACATTGAGTCATCTTTTGATCTTGTTAATCATTTGCTTATTAACCTTGAGTACTTTTTATATGAGCGTATAGGTGTACACACTTCGTATCTTATTCATCATATGTCTGTCACTCATTTTTGCCTGACTATAAATGTTGACTAACGCTTGCTTAAATCGAGTTGGCTTCCCAGCCATCTCCAATACGCATCATCTTTCGCCTCGCTCACTCGCTTGCCGCTCACTCGCTCGTTGATATTCGCTCAGGTGTTGTTAACTTTCGAACCTGAGTTATTCGACAATAAACTGTAGTTGCTGCTAAAAATTGTCTTCTGATTTTACGCGCCGTTAAGATTAGAATTATAACGGTTATCGAAGTGGACGATTAACGAATCGCGGCACTACACCGGTATGAGCAGTCTAGTGTCCTTATTGATCCCTTGTCCTCCTAGTCCTTCCAATGGAGTCTAAAAACATCAATTACAGCTTCTGCTATGTAAATCATTTATTTCAAGCATGCTCTGTTTATATACTAGAGAGACAGACCACATCACACTATAACATATAAATAATATTTGTACAAGATTAAGCCA]
[+] EMBL SMEGFRB [TTTTCGAAAGTTGATGGGGTTCGACAGAACAATTCTTAAATGAATTTTTTACTACCTACTCTGGTTATTATTTTCGCTCTTAATTGCTGGTCCTTAAAATTTTCCATTTCTGAGTACCCATGGATTAAAGCCTGTCGTGTTTGGGAGAGAGACTGCTCGAAGCCTAATCCAAAACATATACAGCTCACTTACATCAAGTTTTTATACGGAGGTTGTACTCACATAATCGGGAATTTGGTTATATGCGGTCTAGAGAAACTTGAAAATGGATCCGATCCTGATCTTTCTTTTCTTGAAAAGATTGAAGATGTGTCCGGTTATGTGTACATTGGTCAAAACAGTGTTAAAACGATATCATTACCGTCTTTGAAAGTTATTCGCGGTGAACCGGGATATCGTATCATGAATACTAGTGCTGCACTTGTTATTAGTCGAAACAGTCTTGAAATCCTAGATTTACGAAGTTTGACAGCCATTCAACGCAACGATATTGTAGCATTAAATAATCAGTTTTTGTGCAACTTTGGTTTCACGATTGATTGGGAACAGATTTTTGAAGACAACCGTAAACAAATGTTTATACCGGATCGAAAAGAAAAAACAGTTTCTCACGCCGGTTGTGATATTGCTCTACGAAAATACACTGATGATCGTACCAAACATTCCTGTCATGGTTCCTGTCCTGTGGTAAATGGACGAGGTTATTGCTGGGGTCCAAAGCCTGAGATGTGTCAAAAAATGCTAAAATGCGCTAACAATCCTGATAACTATTGTCTTGGTGGTAGAGCGACTACACAACCATGTCTGGAAGAATGCTTGGGTGGATGCGAAACTCGTCCTGGCAATTGTAGAGCATGCAAACATGCTATGAATGATGGCAAATGTGTATCACAATGTCCTCCACCATTGATAGTTAGTCGAGAAGAGAGTAGAACTGTTGCAAATCCAGAATTCAAATATAACTTCCATGACATTTGCGTTAAAAATTGCCCAGCGACAACCAAAACCGAACTTCCTCAATTTTTGTTTCACGATGATCCCTAGTTTGTTCATATTATCTATTCATCGACATGTAAATCTGAATGCTGCATCATCTATTACGCATCAAAAATATTCGATTACTGCAATTAATATTCTATTCCCATTGCACTGTACGCCAGAACATAGAGTTTAGAGCTATTCTCTCAAAGATACACTCTTGTTCGTCACATCCAAGTCAGTCTCACTCGCCGTCATCGATAATTATATGTATTGGTATTTTTACTATGCCTTAATACGGTTTCGCAACAAACGAGGTTGAGCGCATATCCCTCTAACTACACAAACCACGATAGGCTGCATGACCATAAAGGAACACGACTCCGCATATCTCATCTAAGCAGTCACTATCCTGTTCCTCTGGTCATTCTACTAATACATATTTAACGATAACTCAACGCAAGCGACAACGCACACTGACTTCTCATTTTATTATCATTATCAATAGCAGTACAGCAATGAATTTCAACCGTTGATGCAGTTATCATCCTACGACTCGATTATTTTTACCACACACGAACTCCAGGTATGCAAATTCGAATCTACTAATCGCTGATCGACGCTATTTACTTTACTGCGGCTTATCGGAACATATTTCGCTGTTCTTTATCCTCATATTCAGTCAGCACCACAGACCAATTACTGTTATACTCTATTTTCACGATATTTCGATTCGCGCATATGAACATGTTATTTTATCATTCGGACAGTCACTACATAAATGCATGCATGTTAAATTTTTTTGTACGCTTACCAATTTACTCATAATCACATGCTAGCATTTCAATTTTTGTCCGCATCTTGACAATATTCATGTACATTTTTACATAAGTATGACACTTTCGTTTAATACGCTCACCCCACTTGACACTGTAATTTATCAGGTATTGCACCATTTTTTTCCCACATTTTGACGTTATCCACATACCGCTTCAGTGTTATTTTTCGAAAATAGACATTTTTTTTATAAATGTGCTATTTTCTACAAGGGGGCTATGTAGTATCGGTTGTTATGTTAAGCCCATATACTTTATTCTAGTTGCTGGCCAAGCCAATTCACCTGTACATTGAGTCATCTTTTGATCTTGTTAATCATTTGCTTATTAACCTTGAGTACTTTTTATATGAGCGTATAGGTGTACACACTTCGTATCTTATTCATCATATGTCTGTCACTCATTTTTGCCTGACTATAAATGTTGACTAACGCTTGCTTAAATCGAGTTGGCTTCCCAGCCATCTCCAATACGCATCATCTTTCGCCTCGCTCACTCGCTTGCCGCTCACTCGCTCGTTGATATTCGCTCAGGTGTTGTTAACTTTCGAACCTGAGTTATTCGACAATAAACTGTAGTTGCTGCTAAAAA ]
[-] EMBL CD191472 [ TCGCTCAGGTGTTGTTCGCTTTCGAACCTGAGTTATTCAACAATAAGCTGTAGTTGCTGCTATCCTTTGTCTTCTGATTTTACGCGCCGTTAAGATTAGAATTATAACGGTTATCGAAGTGGACGATTAACGAATCGCGGCACTACACCGGTATGAGCAGTCTAGTGTCCTTATTGATCCCTTGTCCTCCTAGTCCTTCCAATGGAGTCTAAAAACATCAATTACAGCTTCTGCTATGTAAATCATTTATTTCAAGCATGCTCTGTTTATATACTAGAGAGACAGACCACATCACACTATAACATATAAATAATATTTGTACAAGATTAAGCCA]
consensusID : consensus_4683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 210 fasta sequence
[CCAACCCAAACCATTGGGTTATCAGAGGAGATTGACCAGATTCAGCGAGTAAGTGTCCAGAAGGTGGAGGAACCGTAAAGAATATTAATCAAAATAGTTATCAAGCATTTGCATCACGTATTAGTGCTAGTGGATCGCGCGAAAATACCTATATCACGTTTTAATAGTGAAGATTTAATACCGAAAATTCGTCGATCTTTCATGTTTGAT]
[+] EMBL CD063645 [CCAACCCAAACCATTGGGTTATCAGAGGAGATTGACCAGATTCAGCGAGTAAGTGTCCAGAAGGTGGAGGAACCGTAAAGAATATTAATCAAAATAGTTATCAAGCATTTGCATCACGTATTAGTGCTAGTGGATCGCGCGAAAATACCTATATCACGTTTTAATAGTGAAGATTTAATACCGAAAATTCGTCGATCTTTCATGTTTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4683#0 TTTTCGAAAGTTGATGGGGTTCGACAGAACAATTCTTAAATGAATTTTTTACTACCTACT 60
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 CTGGTTATTATTTTCGCTCTTAATTGCTGGTCCTTAAAATTTTCCATTTCTGAGTACCCA 120
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 TGGATTAAAGCCTGTCGTGTTTGGGAGAGAGACTGCTCGAAGCCTAATCCAAAACATATA 180
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 CAGCTCACTTACATCAAGTTTTTATACGGAGGTTGTACTCACATAATCGGGAATTTGGTT 240
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 ATATGCGGTCTAGAGAAACTTGAAAATGGATCCGATCCTGATCTTTCTTTTCTTGAAAAG 300
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 ATTGAAGATGTGTCCGGTTATGTGTACATTGGTCAAAACAGTGTTAAAACGATATCATTA 360
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 CCGTCTTTGAAAGTTATTCGCGGTGAACCGGGATATCGTATCATGAATACTAGTGCTGCA 420
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 CTTGTTATTAGTCGAAACAGTCTTGAAATCCTAGATTTACGAAGTTTGACAGCCATTCAA 480
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 CGCAACGATATTGTAGCATTAAATAATCAGTTTTTGTGCAACTTTGGTTTCACGATTGAT 540
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 TGGGAACAGATTTTTGAAGACAACCGTAAACAAATGTTTATACCGGATCGAAAAGAAAAA 600
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 ACAGTTTCTCACGCCGGTTGTGATATTGCTCTACGAAAATACACTGATGATCGTACCAAA 660
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 CATTCCTGTCATGGTTCCTGTCCTGTGGTAAATGGACGAGGTTATTGCTGGGGTCCAAAG 720
consensus_4683#1 -------------------------------------------------CCAACCCAAAC 11
*****
consensus_4683#0 CCTGAGATGTGTCAAAAAATGCTAAAATGCGCTAACAATCCTGATAACTATTGTCTTGGT 780
consensus_4683#1 CATTGGGT-TATCAGAGGAGATTGA------CCA--GATTCAGCGAGTAAGTGTCCAGAA 62
* * * * * *** * * * * * * ** * * * * **** *
consensus_4683#0 GGTAGAGCGACTACACAACCATGTCTGGAAGAATGCTTGGGTGG-ATGCGAAACTCGTCC 839
consensus_4683#1 GGTGGAGGAACCGTA-AAGAATATTAATCAAAATAGTTATCAAGCATTTGCATCACGTAT 121
*** *** ** * ** ** * * *** ** * ** * * * ***
consensus_4683#0 TGGCAATTGTAGAGCATGCAAACATGC----------TATGAATGATGGCAAATGTGTAT 889
consensus_4683#1 TAGTGCTAGTGGATCGCGCGAAAATACCTATATCACGTTTTAATAGTGAAGATTTAATAC 181
* * * ** ** * ** ** ** * * * *** ** * * **
consensus_4683#0 CACAATGTCCTCCACCATTGATAGTTAGTCGAGAAGAGAGTAGAACTGTTGCAAATCCAG 949
consensus_4683#1 CGAAAATTCGTCGATCTTTCATGTTTGAT------------------------------- 210
* ** ** ** * * ** ** ** *
consensus_4683#0 AATTCAAATATAACTTCCATGACATTTGCGTTAAAAATTGCCCAGCGACAACCAAAACCG 1009
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 AACTTCCTCAATTTTTGTTTCACGATGATCCCTAGTTTGTTCATATTATCTATTCATCGA 1069
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 CATGTAAATCTGAATGCTGCATCATCTATTACGCATCAAAAATATTCGATTACTGCAATT 1129
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 AATATTCTATTCCCATTGCACTGTACGCCAGAACATAGAGTTTAGAGCTATTCTCTCAAA 1189
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 GATACACTCTTGTTCGTCACATCCAAGTCAGTCTCACTCGCCGTCATCGATAATTATATG 1249
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 TATTGGTATTTTTACTATGCCTTAATACGGTTTCGCAACAAACGAGGTTGAGCGCATATC 1309
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 CCTCTAACTACACAAACCACGATAGGCTGCATGACCATAAAGGAACACGACTCCGCATAT 1369
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 CTCATCTAAGCAGTCACTATCCTGTTCCTCTGGTCATTCTACTAATACATATTTAACGAT 1429
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 AACTCAACGCAAGCGACAACGCACACTGACTTCTCATTTTATTATCATTATCAATAGCAG 1489
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 TACAGCAATGAATTTCAACCGTTGATGCAGTTATCATCCTACGACTCGATTATTTTTACC 1549
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 ACACACGAACTCCAGGTATGCAAATTCGAATCTACTAATCGCTGATCGACGCTATTTACT 1609
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 TTACTGCGGCTTATCGGAACATATTTCGCTGTTCTTTATCCTCATATTCAGTCAGCACCA 1669
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 CAGACCAATTACTGTTATACTCTATTTTCACGATATTTCGATTCGCGCATATGAACATGT 1729
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 TATTTTATCATTCGGACAGTCACTACATAAATGCATGCATGTTAAATTTTTTTGTACGCT 1789
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 TACCAATTTACTCATAATCACATGCTAGCATTTCAATTTTTGTCCGCATCTTGACAATAT 1849
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 TCATGTACATTTTTACATAAGTATGACACTTTCGTTTAATACGCTCACCCCACTTGACAC 1909
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 TGTAATTTATCAGGTATTGCACCATTTTTTTCCCACATTTTGACGTTATCCACATACCGC 1969
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 TTCAGTGTTATTTTTCGAAAATAGACATTTTTTTTATAAATGTGCTATTTTCTACAAGGG 2029
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 GGCTATGTAGTATCGGTTGTTATGTTAAGCCCATATACTTTATTCTAGTTGCTGGCCAAG 2089
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 CCAATTCACCTGTACATTGAGTCATCTTTTGATCTTGTTAATCATTTGCTTATTAACCTT 2149
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 GAGTACTTTTTATATGAGCGTATAGGTGTACACACTTCGTATCTTATTCATCATATGTCT 2209
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 GTCACTCATTTTTGCCTGACTATAAATGTTGACTAACGCTTGCTTAAATCGAGTTGGCTT 2269
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 CCCAGCCATCTCCAATACGCATCATCTTTCGCCTCGCTCACTCGCTTGCCGCTCACTCGC 2329
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 TCGTTGATATTCGCTCAGGTGTTGTTAACTTTCGAACCTGAGTTATTCGACAATAAACTG 2389
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 TAGTTGCTGCTAAAAATTGTCTTCTGATTTTACGCGCCGTTAAGATTAGAATTATAACGG 2449
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 TTATCGAAGTGGACGATTAACGAATCGCGGCACTACACCGGTATGAGCAGTCTAGTGTCC 2509
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 TTATTGATCCCTTGTCCTCCTAGTCCTTCCAATGGAGTCTAAAAACATCAATTACAGCTT 2569
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 CTGCTATGTAAATCATTTATTTCAAGCATGCTCTGTTTATATACTAGAGAGACAGACCAC 2629
consensus_4683#1 ------------------------------------------------------------
consensus_4683#0 ATCACACTATAACATATAAATAATATTTGTACAAGATTAAGCCA 2673
consensus_4683#1 --------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||