These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2673 fasta sequence [TTTTCGAAAGTTGATGGGGTTCGACAGAACAATTCTTAAATGAATTTTTTACTACCTACTCTGGTTATTATTTTCGCTCTTAATTGCTGGTCCTTAAAATTTTCCATTTCTGAGTACCCATGGATTAAAGCCTGTCGTGTTTGGGAGAGAGACTGCTCGAAGCCTAATCCAAAACATATACAGCTCACTTACATCAAGTTTTTATACGGAGGTTGTACTCACATAATCGGGAATTTGGTTATATGCGGTCTAGAGAAACTTGAAAATGGATCCGATCCTGATCTTTCTTTTCTTGAAAAGATTGAAGATGTGTCCGGTTATGTGTACATTGGTCAAAACAGTGTTAAAACGATATCATTACCGTCTTTGAAAGTTATTCGCGGTGAACCGGGATATCGTATCATGAATACTAGTGCTGCACTTGTTATTAGTCGAAACAGTCTTGAAATCCTAGATTTACGAAGTTTGACAGCCATTCAACGCAACGATATTGTAGCATTAAATAATCAGTTTTTGTGCAACTTTGGTTTCACGATTGATTGGGAACAGATTTTTGAAGACAACCGTAAACAAATGTTTATACCGGATCGAAAAGAAAAAACAGTTTCTCACGCCGGTTGTGATATTGCTCTACGAAAATACACTGATGATCGTACCAAACATTCCTGTCATGGTTCCTGTCCTGTGGTAAATGGACGAGGTTATTGCTGGGGTCCAAAGCCTGAGATGTGTCAAAAAATGCTAAAATGCGCTAACAATCCTGATAACTATTGTCTTGGTGGTAGAGCGACTACACAACCATGTCTGGAAGAATGCTTGGGTGGATGCGAAACTCGTCCTGGCAATTGTAGAGCATGCAAACATGCTATGAATGATGGCAAATGTGTATCACAATGTCCTCCACCATTGATAGTTAGTCGAGAAGAGAGTAGAACTGTTGCAAATCCAGAATTCAAATATAACTTCCATGACATTTGCGTTAAAAATTGCCCAGCGACAACCAAAACCGAACTTCCTCAATTTTTGTTTCACGATGATCCCTAGTTTGTTCATATTATCTATTCATCGACATGTAAATCTGAATGCTGCATCATCTATTACGCATCAAAAATATTCGATTACTGCAATTAATATTCTATTCCCATTGCACTGTACGCCAGAACATAGAGTTTAGAGCTATTCTCTCAAAGATACACTCTTGTTCGTCACATCCAAGTCAGTCTCACTCGCCGTCATCGATAATTATATGTATTGGTATTTTTACTATGCCTTAATACGGTTTCGCAACAAACGAGGTTGAGCGCATATCCCTCTAACTACACAAACCACGATAGGCTGCATGACCATAAAGGAACACGACTCCGCATATCTCATCTAAGCAGTCACTATCCTGTTCCTCTGGTCATTCTACTAATACATATTTAACGATAACTCAACGCAAGCGACAACGCACACTGACTTCTCATTTTATTATCATTATCAATAGCAGTACAGCAATGAATTTCAACCGTTGATGCAGTTATCATCCTACGACTCGATTATTTTTACCACACACGAACTCCAGGTATGCAAATTCGAATCTACTAATCGCTGATCGACGCTATTTACTTTACTGCGGCTTATCGGAACATATTTCGCTGTTCTTTATCCTCATATTCAGTCAGCACCACAGACCAATTACTGTTATACTCTATTTTCACGATATTTCGATTCGCGCATATGAACATGTTATTTTATCATTCGGACAGTCACTACATAAATGCATGCATGTTAAATTTTTTTGTACGCTTACCAATTTACTCATAATCACATGCTAGCATTTCAATTTTTGTCCGCATCTTGACAATATTCATGTACATTTTTACATAAGTATGACACTTTCGTTTAATACGCTCACCCCACTTGACACTGTAATTTATCAGGTATTGCACCATTTTTTTCCCACATTTTGACGTTATCCACATACCGCTTCAGTGTTATTTTTCGAAAATAGACATTTTTTTTATAAATGTGCTATTTTCTACAAGGGGGCTATGTAGTATCGGTTGTTATGTTAAGCCCATATACTTTATTCTAGTTGCTGGCCAAGCCAATTCACCTGTACATTGAGTCATCTTTTGATCTTGTTAATCATTTGCTTATTAACCTTGAGTACTTTTTATATGAGCGTATAGGTGTACACACTTCGTATCTTATTCATCATATGTCTGTCACTCATTTTTGCCTGACTATAAATGTTGACTAACGCTTGCTTAAATCGAGTTGGCTTCCCAGCCATCTCCAATACGCATCATCTTTCGCCTCGCTCACTCGCTTGCCGCTCACTCGCTCGTTGATATTCGCTCAGGTGTTGTTAACTTTCGAACCTGAGTTATTCGACAATAAACTGTAGTTGCTGCTAAAAATTGTCTTCTGATTTTACGCGCCGTTAAGATTAGAATTATAACGGTTATCGAAGTGGACGATTAACGAATCGCGGCACTACACCGGTATGAGCAGTCTAGTGTCCTTATTGATCCCTTGTCCTCCTAGTCCTTCCAATGGAGTCTAAAAACATCAATTACAGCTTCTGCTATGTAAATCATTTATTTCAAGCATGCTCTGTTTATATACTAGAGAGACAGACCACATCACACTATAACATATAAATAATATTTGTACAAGATTAAGCCA] [+] EMBL SMEGFRB [TTTTCGAAAGTTGATGGGGTTCGACAGAACAATTCTTAAATGAATTTTTTACTACCTACTCTGGTTATTATTTTCGCTCTTAATTGCTGGTCCTTAAAATTTTCCATTTCTGAGTACCCATGGATTAAAGCCTGTCGTGTTTGGGAGAGAGACTGCTCGAAGCCTAATCCAAAACATATACAGCTCACTTACATCAAGTTTTTATACGGAGGTTGTACTCACATAATCGGGAATTTGGTTATATGCGGTCTAGAGAAACTTGAAAATGGATCCGATCCTGATCTTTCTTTTCTTGAAAAGATTGAAGATGTGTCCGGTTATGTGTACATTGGTCAAAACAGTGTTAAAACGATATCATTACCGTCTTTGAAAGTTATTCGCGGTGAACCGGGATATCGTATCATGAATACTAGTGCTGCACTTGTTATTAGTCGAAACAGTCTTGAAATCCTAGATTTACGAAGTTTGACAGCCATTCAACGCAACGATATTGTAGCATTAAATAATCAGTTTTTGTGCAACTTTGGTTTCACGATTGATTGGGAACAGATTTTTGAAGACAACCGTAAACAAATGTTTATACCGGATCGAAAAGAAAAAACAGTTTCTCACGCCGGTTGTGATATTGCTCTACGAAAATACACTGATGATCGTACCAAACATTCCTGTCATGGTTCCTGTCCTGTGGTAAATGGACGAGGTTATTGCTGGGGTCCAAAGCCTGAGATGTGTCAAAAAATGCTAAAATGCGCTAACAATCCTGATAACTATTGTCTTGGTGGTAGAGCGACTACACAACCATGTCTGGAAGAATGCTTGGGTGGATGCGAAACTCGTCCTGGCAATTGTAGAGCATGCAAACATGCTATGAATGATGGCAAATGTGTATCACAATGTCCTCCACCATTGATAGTTAGTCGAGAAGAGAGTAGAACTGTTGCAAATCCAGAATTCAAATATAACTTCCATGACATTTGCGTTAAAAATTGCCCAGCGACAACCAAAACCGAACTTCCTCAATTTTTGTTTCACGATGATCCCTAGTTTGTTCATATTATCTATTCATCGACATGTAAATCTGAATGCTGCATCATCTATTACGCATCAAAAATATTCGATTACTGCAATTAATATTCTATTCCCATTGCACTGTACGCCAGAACATAGAGTTTAGAGCTATTCTCTCAAAGATACACTCTTGTTCGTCACATCCAAGTCAGTCTCACTCGCCGTCATCGATAATTATATGTATTGGTATTTTTACTATGCCTTAATACGGTTTCGCAACAAACGAGGTTGAGCGCATATCCCTCTAACTACACAAACCACGATAGGCTGCATGACCATAAAGGAACACGACTCCGCATATCTCATCTAAGCAGTCACTATCCTGTTCCTCTGGTCATTCTACTAATACATATTTAACGATAACTCAACGCAAGCGACAACGCACACTGACTTCTCATTTTATTATCATTATCAATAGCAGTACAGCAATGAATTTCAACCGTTGATGCAGTTATCATCCTACGACTCGATTATTTTTACCACACACGAACTCCAGGTATGCAAATTCGAATCTACTAATCGCTGATCGACGCTATTTACTTTACTGCGGCTTATCGGAACATATTTCGCTGTTCTTTATCCTCATATTCAGTCAGCACCACAGACCAATTACTGTTATACTCTATTTTCACGATATTTCGATTCGCGCATATGAACATGTTATTTTATCATTCGGACAGTCACTACATAAATGCATGCATGTTAAATTTTTTTGTACGCTTACCAATTTACTCATAATCACATGCTAGCATTTCAATTTTTGTCCGCATCTTGACAATATTCATGTACATTTTTACATAAGTATGACACTTTCGTTTAATACGCTCACCCCACTTGACACTGTAATTTATCAGGTATTGCACCATTTTTTTCCCACATTTTGACGTTATCCACATACCGCTTCAGTGTTATTTTTCGAAAATAGACATTTTTTTTATAAATGTGCTATTTTCTACAAGGGGGCTATGTAGTATCGGTTGTTATGTTAAGCCCATATACTTTATTCTAGTTGCTGGCCAAGCCAATTCACCTGTACATTGAGTCATCTTTTGATCTTGTTAATCATTTGCTTATTAACCTTGAGTACTTTTTATATGAGCGTATAGGTGTACACACTTCGTATCTTATTCATCATATGTCTGTCACTCATTTTTGCCTGACTATAAATGTTGACTAACGCTTGCTTAAATCGAGTTGGCTTCCCAGCCATCTCCAATACGCATCATCTTTCGCCTCGCTCACTCGCTTGCCGCTCACTCGCTCGTTGATATTCGCTCAGGTGTTGTTAACTTTCGAACCTGAGTTATTCGACAATAAACTGTAGTTGCTGCTAAAAA ] [-] EMBL CD191472 [ TCGCTCAGGTGTTGTTCGCTTTCGAACCTGAGTTATTCAACAATAAGCTGTAGTTGCTGCTATCCTTTGTCTTCTGATTTTACGCGCCGTTAAGATTAGAATTATAACGGTTATCGAAGTGGACGATTAACGAATCGCGGCACTACACCGGTATGAGCAGTCTAGTGTCCTTATTGATCCCTTGTCCTCCTAGTCCTTCCAATGGAGTCTAAAAACATCAATTACAGCTTCTGCTATGTAAATCATTTATTTCAAGCATGCTCTGTTTATATACTAGAGAGACAGACCACATCACACTATAACATATAAATAATATTTGTACAAGATTAAGCCA] consensusID : consensus_4683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 210 fasta sequence [CCAACCCAAACCATTGGGTTATCAGAGGAGATTGACCAGATTCAGCGAGTAAGTGTCCAGAAGGTGGAGGAACCGTAAAGAATATTAATCAAAATAGTTATCAAGCATTTGCATCACGTATTAGTGCTAGTGGATCGCGCGAAAATACCTATATCACGTTTTAATAGTGAAGATTTAATACCGAAAATTCGTCGATCTTTCATGTTTGAT] [+] EMBL CD063645 [CCAACCCAAACCATTGGGTTATCAGAGGAGATTGACCAGATTCAGCGAGTAAGTGTCCAGAAGGTGGAGGAACCGTAAAGAATATTAATCAAAATAGTTATCAAGCATTTGCATCACGTATTAGTGCTAGTGGATCGCGCGAAAATACCTATATCACGTTTTAATAGTGAAGATTTAATACCGAAAATTCGTCGATCTTTCATGTTTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4683#0 TTTTCGAAAGTTGATGGGGTTCGACAGAACAATTCTTAAATGAATTTTTTACTACCTACT 60 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 CTGGTTATTATTTTCGCTCTTAATTGCTGGTCCTTAAAATTTTCCATTTCTGAGTACCCA 120 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 TGGATTAAAGCCTGTCGTGTTTGGGAGAGAGACTGCTCGAAGCCTAATCCAAAACATATA 180 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 CAGCTCACTTACATCAAGTTTTTATACGGAGGTTGTACTCACATAATCGGGAATTTGGTT 240 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 ATATGCGGTCTAGAGAAACTTGAAAATGGATCCGATCCTGATCTTTCTTTTCTTGAAAAG 300 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 ATTGAAGATGTGTCCGGTTATGTGTACATTGGTCAAAACAGTGTTAAAACGATATCATTA 360 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 CCGTCTTTGAAAGTTATTCGCGGTGAACCGGGATATCGTATCATGAATACTAGTGCTGCA 420 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 CTTGTTATTAGTCGAAACAGTCTTGAAATCCTAGATTTACGAAGTTTGACAGCCATTCAA 480 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 CGCAACGATATTGTAGCATTAAATAATCAGTTTTTGTGCAACTTTGGTTTCACGATTGAT 540 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 TGGGAACAGATTTTTGAAGACAACCGTAAACAAATGTTTATACCGGATCGAAAAGAAAAA 600 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 ACAGTTTCTCACGCCGGTTGTGATATTGCTCTACGAAAATACACTGATGATCGTACCAAA 660 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 CATTCCTGTCATGGTTCCTGTCCTGTGGTAAATGGACGAGGTTATTGCTGGGGTCCAAAG 720 consensus_4683#1 -------------------------------------------------CCAACCCAAAC 11 ***** consensus_4683#0 CCTGAGATGTGTCAAAAAATGCTAAAATGCGCTAACAATCCTGATAACTATTGTCTTGGT 780 consensus_4683#1 CATTGGGT-TATCAGAGGAGATTGA------CCA--GATTCAGCGAGTAAGTGTCCAGAA 62 * * * * * *** * * * * * * ** * * * * **** * consensus_4683#0 GGTAGAGCGACTACACAACCATGTCTGGAAGAATGCTTGGGTGG-ATGCGAAACTCGTCC 839 consensus_4683#1 GGTGGAGGAACCGTA-AAGAATATTAATCAAAATAGTTATCAAGCATTTGCATCACGTAT 121 *** *** ** * ** ** * * *** ** * ** * * * *** consensus_4683#0 TGGCAATTGTAGAGCATGCAAACATGC----------TATGAATGATGGCAAATGTGTAT 889 consensus_4683#1 TAGTGCTAGTGGATCGCGCGAAAATACCTATATCACGTTTTAATAGTGAAGATTTAATAC 181 * * * ** ** * ** ** ** * * * *** ** * * ** consensus_4683#0 CACAATGTCCTCCACCATTGATAGTTAGTCGAGAAGAGAGTAGAACTGTTGCAAATCCAG 949 consensus_4683#1 CGAAAATTCGTCGATCTTTCATGTTTGAT------------------------------- 210 * ** ** ** * * ** ** ** * consensus_4683#0 AATTCAAATATAACTTCCATGACATTTGCGTTAAAAATTGCCCAGCGACAACCAAAACCG 1009 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 AACTTCCTCAATTTTTGTTTCACGATGATCCCTAGTTTGTTCATATTATCTATTCATCGA 1069 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 CATGTAAATCTGAATGCTGCATCATCTATTACGCATCAAAAATATTCGATTACTGCAATT 1129 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 AATATTCTATTCCCATTGCACTGTACGCCAGAACATAGAGTTTAGAGCTATTCTCTCAAA 1189 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 GATACACTCTTGTTCGTCACATCCAAGTCAGTCTCACTCGCCGTCATCGATAATTATATG 1249 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 TATTGGTATTTTTACTATGCCTTAATACGGTTTCGCAACAAACGAGGTTGAGCGCATATC 1309 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 CCTCTAACTACACAAACCACGATAGGCTGCATGACCATAAAGGAACACGACTCCGCATAT 1369 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 CTCATCTAAGCAGTCACTATCCTGTTCCTCTGGTCATTCTACTAATACATATTTAACGAT 1429 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 AACTCAACGCAAGCGACAACGCACACTGACTTCTCATTTTATTATCATTATCAATAGCAG 1489 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 TACAGCAATGAATTTCAACCGTTGATGCAGTTATCATCCTACGACTCGATTATTTTTACC 1549 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 ACACACGAACTCCAGGTATGCAAATTCGAATCTACTAATCGCTGATCGACGCTATTTACT 1609 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 TTACTGCGGCTTATCGGAACATATTTCGCTGTTCTTTATCCTCATATTCAGTCAGCACCA 1669 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 CAGACCAATTACTGTTATACTCTATTTTCACGATATTTCGATTCGCGCATATGAACATGT 1729 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 TATTTTATCATTCGGACAGTCACTACATAAATGCATGCATGTTAAATTTTTTTGTACGCT 1789 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 TACCAATTTACTCATAATCACATGCTAGCATTTCAATTTTTGTCCGCATCTTGACAATAT 1849 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 TCATGTACATTTTTACATAAGTATGACACTTTCGTTTAATACGCTCACCCCACTTGACAC 1909 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 TGTAATTTATCAGGTATTGCACCATTTTTTTCCCACATTTTGACGTTATCCACATACCGC 1969 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 TTCAGTGTTATTTTTCGAAAATAGACATTTTTTTTATAAATGTGCTATTTTCTACAAGGG 2029 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 GGCTATGTAGTATCGGTTGTTATGTTAAGCCCATATACTTTATTCTAGTTGCTGGCCAAG 2089 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 CCAATTCACCTGTACATTGAGTCATCTTTTGATCTTGTTAATCATTTGCTTATTAACCTT 2149 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 GAGTACTTTTTATATGAGCGTATAGGTGTACACACTTCGTATCTTATTCATCATATGTCT 2209 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 GTCACTCATTTTTGCCTGACTATAAATGTTGACTAACGCTTGCTTAAATCGAGTTGGCTT 2269 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 CCCAGCCATCTCCAATACGCATCATCTTTCGCCTCGCTCACTCGCTTGCCGCTCACTCGC 2329 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 TCGTTGATATTCGCTCAGGTGTTGTTAACTTTCGAACCTGAGTTATTCGACAATAAACTG 2389 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 TAGTTGCTGCTAAAAATTGTCTTCTGATTTTACGCGCCGTTAAGATTAGAATTATAACGG 2449 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 TTATCGAAGTGGACGATTAACGAATCGCGGCACTACACCGGTATGAGCAGTCTAGTGTCC 2509 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 TTATTGATCCCTTGTCCTCCTAGTCCTTCCAATGGAGTCTAAAAACATCAATTACAGCTT 2569 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 CTGCTATGTAAATCATTTATTTCAAGCATGCTCTGTTTATATACTAGAGAGACAGACCAC 2629 consensus_4683#1 ------------------------------------------------------------ consensus_4683#0 ATCACACTATAACATATAAATAATATTTGTACAAGATTAAGCCA 2673 consensus_4683#1 -------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||