These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 280 fasta sequence [ACCTAGTGGACCATTTGATGTGGCACAATATTCACAAAATTATTATTTTGTACCAAATCATATTAATCAGTCAATGCGAATATCAGCTTCACCACCAATACGTCTTGGTTCGCCAATGATACATACATCAATTACTAATAATACAAATAATAATAATAATGATAACAATAATAATAATAATCCTACTAATGAAGGAAATGGTCCACAGTTAAATACATCTAATCTCCCACCCTCCAACAATAATACAAAATTAAAAGGCATAAAGCTTTCTCCCACTAGG] [+] EMBL CD084377 [ACCTAGTGGACCATTTGATGTGGCACAATATTCACAAAATTATTATTTTGTACCAAATCATATTAATCAGTCAATGCGAATATCAGCTTCACCACCAATACGTCTTGGTTCGCCAATGATACATACATCAATTACTAATAATACAAATAATAATAATAATGATAACAATAATAATAATAATCCTACTAATGAAGGAAATGGTCCACAGTTAAATACATCTAATCTCCCACCCTCCAACAATAATACAAAATTAAAAGGCATAAAGCTTTCTCCCACTAGG] [+] EMBL CD186275 [ TGTGGCACAATATTCACAAAATTATTATTTTGTACCAAATCATATTAATCAGTCAATGCGAATATCAGCTTCACCACCAATACGTCTTGGTTCGCCAATGATACATACATCAATTACTAATAATACAAATAATAATAATAATGATAACAATAATAATAATAATCCTACTAATGAAGGAAATGGTCCACAGTTAAATACATCTAATCTCCCACCCTCCAACAATAATACAAAATTAAAAGGCATA ] consensusID : consensus_4684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence [GACCATTTGATGTGGCACAATATTCACAAAATTATTATTTTGTACCAAATCATATTAATCAGTCAATGCGAATATCAGCTTCACCACCAATACGTCTTGGTTCGCCAATGATACATACATCATTTACTAATAATACAGATACAAATAATAGTCCTACTCACTATAATAATAGTAATGACTATAACATTCGATATTCTATGCAACAGCAACCTATGAGTCCACAACCGATAGCTGTCGGTTCAGGAGGACATCAA] [+] EMBL CD170007 [GACCATTTGATGTGGCACAATATTCACAAAATTATTATTTTGTACCAAATCATATTAATCAGTCAATGCGAATATCAGCTTCACCACCAATACGTCTTGGTTCGCCAATGATACATACATCATTTACTAATAATACAGATACAAATAATAGTCCTACTCACTATAATAATAGTAATGACTATAACATTCGATATTCTATGCAACAGCAACCTATGAGTCCACAACCGATAGCTGTCGGTTCAGGAGGACATCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4684#0 ACCTAGTGGACCATTTGATGTGGCACAATATTCACAAAATTATTATTTTGTACCAAATCA 60 consensus_4684#1 --------GACCATTTGATGTGGCACAATATTCACAAAATTATTATTTTGTACCAAATCA 52 **************************************************** consensus_4684#0 TATTAATCAGTCAATGCGAATATCAGCTTCACCACCAATACGTCTTGGTTCGCCAATGAT 120 consensus_4684#1 TATTAATCAGTCAATGCGAATATCAGCTTCACCACCAATACGTCTTGGTTCGCCAATGAT 112 ************************************************************ consensus_4684#0 ACATACATCAATTACTAATAATACAAATAATAATAATAATGATA---ACAATAATAATAA 177 consensus_4684#1 ACATACATCATTTACTAATAATACAGATACAAATAATAGTCCTACTCACTATAATAATAG 172 ********** ************** *** ******* * ** ** ********* consensus_4684#0 TAATCCTACTAATGAAGGAAATGGTCCACAGTTAAATACATCTAATCTCCCACCCTCCAA 237 consensus_4684#1 TAATGACTATAACATTCGATATTCTATGCAAC-AGCAACCTATGAGTCCACAACCGATAG 231 **** *** ** ** * ** * ** * * * * ** ** * consensus_4684#0 CAATAATACAAAATTAAAAGGCATAAAGCTTTCTCCCACTAGG 280 consensus_4684#1 CTGT----CGGTTCAGGAGGACATCAA---------------- 254 * * * * * *** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||