cluster # 4686

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Schistosoma mansoni
cluster # 4686 cluster # 4686 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4686#0 length = 540 sequences # 2

consensus_4686#1 length = 422 sequences # 1

consensusID : consensus_4686#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 540
fasta sequence

                              [GTCGTTAAGACCAACACTAATCCAACTTTTTTTCAGGTACCTCTAGAAGAACCTTTTCACGGTGTGGGCAGCCGGGAAGTGATATTAGCCCTCATACCCGTAACTGCACACGAGACCAAGTTGGTCACTTTCAAATCCTTCACTGGCTAATGTTAGAGTGATAATCCTGATTAACGGTTGGAAAGATAAGGGACTCAAAATTAATTCTAGTTGCTCAGATACATTTTTATGCTTTATCTAATTTTGAATCTTTAACCTTGATATTACATCATACTAACTATTCTCTAGTTTTATTCATTCTCTTAGAATAACATCTTTTTGTATTAAGTTACTTTTATCATGGTGAATATTACAATTTCTATTTGCCTTGGTGAGATGATGTGACAACTTTACTCAATGTCAACTCAACGACGCGTTGATCTTCAGTGATTCCTAGGATACATCAAAGAAGTATTTTACAAAACATTATAGGACGGAATTTTTTGTGTATGATAACCTTTGTAAGCGCCTAGCACANTATTTACCAAAACAATACCACGA]

[+] EMBL CD090981             [GTCGTTAAGACCAACACTAATCCAACTTTTTTTCAGGTACCTCTAGAAGAACCTTTTCACGGTGTGGGCAGCCGGGAAGTGATATTAGCCCTCATACCCGTAACTGCACACGAGACCAAGTTGGTCACTTTCAAATCCTTCACTGGCTAATGTTAGAGTGATAATCCTGATTAACGGTTGGAAAGATAAGGGACTCAAAATTAATTCTAGTTGCTCAGATACATTTTTATGCTTTATCTAATTTTGAATCTTTAACCTTGATATTACATCATACTAACTATTCTCTAGTTTTATTCATTCTCTTAGAATAACATCTTTTTGTATTAAGTTACTTTTATCATGGTGAATATTACAATTTCTATTTGCCTTGGTGAGATGATGTGACAACTTTACTCAATGTCAACTCAACGACGCGTTGATCTTCAGTGATTCCTAGGATACATCAAAGAAGTATTTTACAAAACATTATAGGACGGAATTTTTTGTGTATGATAACCTTTGTAAGCGCCTAGCACANTATTTACCAAAACAATACCACGA]
[+] EMBL CD091021             [GTCGTTAAGACCAACACTAATCCAACTTTTTTTCAGGTACCTCTAGAAGAACCTTTTCACGGTGTGGGCAGCCGGGAAGTGATATTAGCCCTCATACCCGTAACTGCACACGAGACCAAGTTGGTCACTTTCAAATCCTTCACTGGCTAGTGTTAGAGTGATAATCCTGATTAACGGTTGGAAAGATAAGGGACTCAAAATTAATTCTAGTTGCTCAGATACATTTTTATGCTTTATCTAATTTTGAATCTTTAACCTTGATATTACATCATACTAACTATTCTCTAGTTTTATTCATTCTCTTGGAATAACATCTTTTTGTATTAAGTTACTTTTATCATGGTGAATATTACAATTTCTATTTGCCTTGGTGAGATGATGTGACAACTTTACTCAATGTCAACTCAACGACGCGTTGATCTTCAGTGATTCCTAGGATACATCAAAGAAGTATTTTACAAAACATTATAGGACGGAATTTTTTGTGTATGATAACCTTTGTAAGCGCCTAGCACAATATTTACCANAACAATACCACGA]




>consensus_4686#0
GTCGTTAAGACCAACACTAATCCAACTTTTTTTCAGGTACCTCTAGAAGAACCTTTTCAC
GGTGTGGGCAGCCGGGAAGTGATATTAGCCCTCATACCCGTAACTGCACACGAGACCAAG
TTGGTCACTTTCAAATCCTTCACTGGCTAATGTTAGAGTGATAATCCTGATTAACGGTTG
GAAAGATAAGGGACTCAAAATTAATTCTAGTTGCTCAGATACATTTTTATGCTTTATCTA
ATTTTGAATCTTTAACCTTGATATTACATCATACTAACTATTCTCTAGTTTTATTCATTC
TCTTAGAATAACATCTTTTTGTATTAAGTTACTTTTATCATGGTGAATATTACAATTTCT
ATTTGCCTTGGTGAGATGATGTGACAACTTTACTCAATGTCAACTCAACGACGCGTTGAT
CTTCAGTGATTCCTAGGATACATCAAAGAAGTATTTTACAAAACATTATAGGACGGAATT
TTTTGTGTATGATAACCTTTGTAAGCGCCTAGCACANTATTTACCAAAACAATACCACGA

consensusID : consensus_4686#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [TATACAAGAAAGTCCTAGTGACTGTTAACTTTTTTTTGGAGACATTTATTTTATTAATCTCTATCAGTAAACTGAATATTCATCTGATAAATCGCCTTGACCCATTACTTTTTATTTTTGTCTCGTTTATTCACTAAGCACTAACAATCAACATCTATGCTTATAACGTTCGCATTTATAGTAGTATAGACTTTCTTTATCTACTAAGGTATGGAGAATTTCATTAAATTATTGGAAGGAGCTCATGAGATGGATAAACATTTCAAAGAGACGCCATTGCATAAAAACGTAAGTTGCTATGTTATAAATTTCTTTATTGATACTGCTCTAAATTATCATTACTCCGAGTAGAAATTTATAAATTATATGTGATCTGATATTCCTGAATAATAAGGACAAATATGAGAGCAAATTTGTAATGA]

[+] EMBL CD163810             [TATACAAGAAAGTCCTAGTGACTGTTAACTTTTTTTTGGAGACATTTATTTTATTAATCTCTATCAGTAAACTGAATATTCATCTGATAAATCGCCTTGACCCATTACTTTTTATTTTTGTCTCGTTTATTCACTAAGCACTAACAATCAACATCTATGCTTATAACGTTCGCATTTATAGTAGTATAGACTTTCTTTATCTACTAAGGTATGGAGAATTTCATTAAATTATTGGAAGGAGCTCATGAGATGGATAAACATTTCAAAGAGACGCCATTGCATAAAAACGTAAGTTGCTATGTTATAAATTTCTTTATTGATACTGCTCTAAATTATCATTACTCCGAGTAGAAATTTATAAATTATATGTGATCTGATATTCCTGAATAATAAGGACAAATATGAGAGCAAATTTGTAATGA]




>consensus_4686#1
TATACAAGAAAGTCCTAGTGACTGTTAACTTTTTTTTGGAGACATTTATTTTATTAATCT
CTATCAGTAAACTGAATATTCATCTGATAAATCGCCTTGACCCATTACTTTTTATTTTTG
TCTCGTTTATTCACTAAGCACTAACAATCAACATCTATGCTTATAACGTTCGCATTTATA
GTAGTATAGACTTTCTTTATCTACTAAGGTATGGAGAATTTCATTAAATTATTGGAAGGA
GCTCATGAGATGGATAAACATTTCAAAGAGACGCCATTGCATAAAAACGTAAGTTGCTAT
GTTATAAATTTCTTTATTGATACTGCTCTAAATTATCATTACTCCGAGTAGAAATTTATA
AATTATATGTGATCTGATATTCCTGAATAATAAGGACAAATATGAGAGCAAATTTGTAAT
GA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4686#0      GTCGTTAAGACCAACACTAATCCAACTTTTTTTCAGGTACCTCTAGAAGAACCTTTTCAC 60
consensus_4686#1      ------------------------------------------------------------
                                                                                  

consensus_4686#0      GGTGTGGGCAGCCGGGAAGTGATATTAGCCCTCATACCCGTAACTGCACACGAGACCAAG 120
consensus_4686#1      --------------------------------TATACAAGAAAGTCCTAGTGACTGTTAA 28
                                                       ****  * ** * *    **     * 

consensus_4686#0      TTGGTCACTTTCAAATCCTTCACTGGCTAATGTTAGAGTGATAATCCTGATTAACGGTTG 180
consensus_4686#1      CT--TTTTTTTGGAGACATTTATTTTATTAATCTCTATCAGTAAAC-TGAATATTCATCT 85
                       *  *   ***  *  * ** * *   * *   *  *    *** * *** **    *  

consensus_4686#0      GAAAGATAAGG--GACTCAAAATTAATTCTAGTTGCTCAGATACATTTTTATGCTTTA-- 236
consensus_4686#1      GATAAATCGCCTTGACCCATTACTTTTTATTTTTGTCTCGTTTATTCACTAAGCACTAAC 145
                      ** * **      *** **  * *  ** *  ***    * *   *   ** **  **  

consensus_4686#0      --TCTAATTTTGAATCTTTAACCTTGATATTACATCATACTAACTATTCTCTAGTTTTAT 294
consensus_4686#1      AATCAACATCTATGCTTATAACGTTCGCATT-TATAGTAGTATAGACTTTCTTTATCTAC 204
                        ** *  * *     * **** **   ***  **  ** **   * * ***   * ** 

consensus_4686#0      TCATTCTCTTAGAATAACATCTTTTTGTATTAAGTTACTTTTATCATGG-TGAATATTAC 353
consensus_4686#1      TAAGGTATGGAGAATTTCATTAAATTATTGGAAGGAGCTCATGAGATGGATAAACATTTC 264
                      * *       *****  ***    ** *   ***   **  *   **** * ** *** *

consensus_4686#0      AATTTCTATTTGCCTTGGTGAGATGATGTGA-CAACTTTACTCAATGTCAACTCAACGAC 412
consensus_4686#1      AA---AGAGACGCCATTGCATAAAAACGTAAGTTGCTATGTTATAAATTTCTTTATTGAT 321
                      **     *   *** * *    *  * ** *    ** *  *  *  *    * *  ** 

consensus_4686#0      GCGTTGATCTTCAGTGATTCCTAGGATACATCAAAGAAGTATTTTACAAAACATTATAGG 472
consensus_4686#1      AC--TGCTCTA-AATTATCATTAC------TCCGAGTAGAAATTTATAAATTATATGTGA 372
                       *  ** ***  * * **   **       **  ** ** * **** ***  **    * 

consensus_4686#0      ACGGAATTTTTTGTGTA-TGATAACCTTTGTAAGCGCCTAGCACANTATTTACCAAAACA 531
consensus_4686#1      TCTGATATTCCTGAATAATAAGGACAAATATGAG-----AGCAAATTTGTAATGA----- 422
                       * **  **  **  ** * *  **   * * **     **** * *  * *  *     

consensus_4686#0      ATACCACGA 540
consensus_4686#1      ---------