cluster # 4694

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Schistosoma mansoni
cluster # 4694 cluster # 4694 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4694#0 length = 469 sequences # 2

consensus_4694#1 length = 434 sequences # 1

consensusID : consensus_4694#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 469
fasta sequence

                              [ACCTGTTAGTGTTACTGTAATAGATGCATCAATTGAATTGTTTGGTCGTTTATTTGCTTGTGTTTCTATTCGTCATCGTACACAAATGTTAGAACATTTTACTGAATGTATTCGTCTTACAAAATCAATACGTCAAGAAGCTGTACAAATTAATGTTTTCGCTGCGTTATTAAGTGCATTACGATATTTAGCTGAAACAAAATCTACATTCGGTGATGATCCAGCGTTAAGAAAAGCTGCTACAAACCTAATTTTTTCTAGATTATGCGGAGACCATTATGCTCAGAATTCTTCGTTGAATGGATCACAAAGAAGTATTGTTTATGATGCTACTCTGACTAGTCAAAGTGTTCTACTACGTTGTGTGGCTGGTGAATGTCTTGGAAGGCTTGCGCAAGTTGTTGGCGAATCTGGATTTCTAGCAGAATTAGCTCAGCAAATTTTTGAACGTCTACGTGCTATTCGCAAT]

[+] EMBL CD163333             [ACCTGTTAGTGTTACTGTAATAGATGCATCAATTGAATTGTTTGGTCGTTTATTTGCTTGTGTTTCTATTCGTCATCGTACACAAATGTTAGAACATTTTACTGAATGTATTCGTCTTACAAAATCAATACGTCAAGAAGCTGTACAAATTAATGTTTTCGCTGCGTTATTAAGTGCATTACGATATTTAGCTGAAACAAAATCTACATTCGGTGATGATCCAGCGTTAAGAAAAGCTGCTACAAACCTAATTTTTTCTAGATTATGCGGAGACCATTATGCTCAGAATTCTTCGTTGAATGGATCACAAAGAAGTATTGTTTATGATGCTACTCTGACTAGTCAAAGTGTTCTACTACGTTGTGTGGCTGGTGAATGTCTTGGAAGGCTTGCGCAAGTTGTTGGCGAATCTGGATTTCTAGCAGAATTAGCTCAGCAAATTTTTGAACGTCTACGTGCTATTCGCAAT]
[+] EMBL CD163106             [ACCTGTTAGTGTTACTGTAATAGATGCATCAATTGAATTGTTTGGTCGTTTATTTGCTTGTGTTTCTATTCGTCATCGTACACAAATGTTAGAACATTTTACTGAATGTATTCGTCTTACAAAATCAATACGTCAAGAAGCTGTACAGATTAATGTTTTCGCTGCGTTATTAAGTGCATTACGATATTTAGCTGAAACAAAATCTACATTCGGTGATGATCCAGCGTTAAGAAAAGCTGCTACAAACCTAATTTTTTCTAGATTATGCGGAGACCATTATGCTCAGAATTCTTCGTCGAATGGATCACAAAGAAGTATTG TTATGATGCTACTTTGACTAGTCAAAGTGTTCTACTACGTTGTGTGGCTGGTGAATGTCTTGGAAGGCTTGCACAAGTTGTTGGCGAATCTGGATTTCTAGCAGAATT                                        ]




>consensus_4694#0
ACCTGTTAGTGTTACTGTAATAGATGCATCAATTGAATTGTTTGGTCGTTTATTTGCTTG
TGTTTCTATTCGTCATCGTACACAAATGTTAGAACATTTTACTGAATGTATTCGTCTTAC
AAAATCAATACGTCAAGAAGCTGTACAAATTAATGTTTTCGCTGCGTTATTAAGTGCATT
ACGATATTTAGCTGAAACAAAATCTACATTCGGTGATGATCCAGCGTTAAGAAAAGCTGC
TACAAACCTAATTTTTTCTAGATTATGCGGAGACCATTATGCTCAGAATTCTTCGTTGAA
TGGATCACAAAGAAGTATTGTTTATGATGCTACTCTGACTAGTCAAAGTGTTCTACTACG
TTGTGTGGCTGGTGAATGTCTTGGAAGGCTTGCGCAAGTTGTTGGCGAATCTGGATTTCT
AGCAGAATTAGCTCAGCAAATTTTTGAACGTCTACGTGCTATTCGCAAT

consensusID : consensus_4694#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [CATAATCTTGGAAATTTTACTAATTCCACATTATCTTGTGCATTACAATTAACTGGACCTATACCTGTTAGTGTTACTGTAATAGATGCATCAATTGAATTGTTTGGTCGTTTATTTGCTTGTGTTTCTATTCGTCATCGTACACAAATGTTAGAACATTTTACTGAATGTATTCGTCGTACAAAATCAATACGTCAAGAAGCTGTACAAATTAATGTTTTCGCTGCGTTATTAAGTGCATTACGATATTTAGCTGAAACAAAATCTACATTCGGTGATGATCCAGCGTTAAGAAAAGCTGCTACAAACCTAATTATTGCTACTCTGACTAGTCAAAGTGTTCTACTACGTTGTGTGGCTGGTGAATGTCTTGGAAGGCTTGCACAAGATGTTGGCGAATCTGGATTTCTAGCAGAATTAGCTCACCAAATTTT]

[-] EMBL CD191929             [CATAATCTTGGAAATTTTACTAATTCCACATTATCTTGTGCATTACAATTAACTGGACCTATACCTGTTAGTGTTACTGTAATAGATGCATCAATTGAATTGTTTGGTCGTTTATTTGCTTGTGTTTCTATTCGTCATCGTACACAAATGTTAGAACATTTTACTGAATGTATTCGTCGTACAAAATCAATACGTCAAGAAGCTGTACAAATTAATGTTTTCGCTGCGTTATTAAGTGCATTACGATATTTAGCTGAAACAAAATCTACATTCGGTGATGATCCAGCGTTAAGAAAAGCTGCTACAAACCTAATTATTGCTACTCTGACTAGTCAAAGTGTTCTACTACGTTGTGTGGCTGGTGAATGTCTTGGAAGGCTTGCACAAGATGTTGGCGAATCTGGATTTCTAGCAGAATTAGCTCACCAAATTTT]




>consensus_4694#1
CATAATCTTGGAAATTTTACTAATTCCACATTATCTTGTGCATTACAATTAACTGGACCT
ATACCTGTTAGTGTTACTGTAATAGATGCATCAATTGAATTGTTTGGTCGTTTATTTGCT
TGTGTTTCTATTCGTCATCGTACACAAATGTTAGAACATTTTACTGAATGTATTCGTCGT
ACAAAATCAATACGTCAAGAAGCTGTACAAATTAATGTTTTCGCTGCGTTATTAAGTGCA
TTACGATATTTAGCTGAAACAAAATCTACATTCGGTGATGATCCAGCGTTAAGAAAAGCT
GCTACAAACCTAATTATTGCTACTCTGACTAGTCAAAGTGTTCTACTACGTTGTGTGGCT
GGTGAATGTCTTGGAAGGCTTGCACAAGATGTTGGCGAATCTGGATTTCTAGCAGAATTA
GCTCACCAAATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4694#0      ------------------------------------------------------------
consensus_4694#1      CATAATCTTGGAAATTTTACTAATTCCACATTATCTTGTGCATTACAATTAACTGGACCT 60
                                                                                  

consensus_4694#0      --ACCTGTTAGTGTTACTGTAATAGATGCATCAATTGAATTGTTTGGTCGTTTATTTGCT 58
consensus_4694#1      ATACCTGTTAGTGTTACTGTAATAGATGCATCAATTGAATTGTTTGGTCGTTTATTTGCT 120
                        **********************************************************

consensus_4694#0      TGTGTTTCTATTCGTCATCGTACACAAATGTTAGAACATTTTACTGAATGTATTCGTCTT 118
consensus_4694#1      TGTGTTTCTATTCGTCATCGTACACAAATGTTAGAACATTTTACTGAATGTATTCGTCGT 180
                      ********************************************************** *

consensus_4694#0      ACAAAATCAATACGTCAAGAAGCTGTACAAATTAATGTTTTCGCTGCGTTATTAAGTGCA 178
consensus_4694#1      ACAAAATCAATACGTCAAGAAGCTGTACAAATTAATGTTTTCGCTGCGTTATTAAGTGCA 240
                      ************************************************************

consensus_4694#0      TTACGATATTTAGCTGAAACAAAATCTACATTCGGTGATGATCCAGCGTTAAGAAAAGCT 238
consensus_4694#1      TTACGATATTTAGCTGAAACAAAATCTACATTCGGTGATGATCCAGCGTTAAGAAAAGCT 300
                      ************************************************************

consensus_4694#0      GCTACAAACCTAATTTTTTCTAGATTATGCGGAGACCATTATGCTCAGAATTCTTCGTTG 298
consensus_4694#1      GCTACAAACCTAATTATT------------------------------------------ 318
                      *************** **                                          

consensus_4694#0      AATGGATCACAAAGAAGTATTGTTTATGATGCTACTCTGACTAGTCAAAGTGTTCTACTA 358
consensus_4694#1      ------------------------------GCTACTCTGACTAGTCAAAGTGTTCTACTA 348
                                                    ******************************

consensus_4694#0      CGTTGTGTGGCTGGTGAATGTCTTGGAAGGCTTGCGCAAGTTGTTGGCGAATCTGGATTT 418
consensus_4694#1      CGTTGTGTGGCTGGTGAATGTCTTGGAAGGCTTGCACAAGATGTTGGCGAATCTGGATTT 408
                      *********************************** **** *******************

consensus_4694#0      CTAGCAGAATTAGCTCAGCAAATTTTTGAACGTCTACGTGCTATTCGCAAT 469
consensus_4694#1      CTAGCAGAATTAGCTCACCAAATTTT------------------------- 434
                      ***************** ********