cluster # 4714

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Schistosoma mansoni
cluster # 4714 cluster # 4714 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4714#0 length = 822 sequences # 2

consensus_4714#1 length = 89 sequences # 1

consensusID : consensus_4714#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 822
fasta sequence

                              [CTACAAACCACTTTTCGAAAATCAACACTCGTTTCGGCCCAAAACACGCAACCAGTAGGTCATATTTGTTTACTTCTGTCCATTATAAAACTATGTTTCTTGAGAAACCTTAGATACTAACATGAAGTGGAAAATCAAAATTCAGAACAATTCACAAACGAAATTACTATTGACTAATGAGAACGAACTCGCATTCCCATACACATCTCTAGCAGTGACATTCTCACAGCACTGATTGGTTAAATAATGTCGAATAGGGTAATCTTTAGTGATTTTTAGAACATGTGGTCGGGATTTTAAACCACAAATGTAATTATTGACAATCATAGCCAAACAACTAAAGTATTTTACCACATTTAGATAGTTCTATGAGAATTAAATACCACCAACAATTTGATTGCAATTTTTACGGACTCAGACTGCTCGGATATATGCTTGTGTAGATAACTTTCCCTTATTTTACTTTACGAATGAGCCATGAGCAGATTATAGAAACTTGATAGTATTTGCGAACACTATGTTTAAATTACTTAGTGTCAGTCGCATAGTATAATGCGAAGCACATAAACCAGTGAGTGAATTTATAAACCTTCAGTGACTAAAGTGATTAAGATATGTCACCATGTCTAGTGTGCTCTCCTAATTGAAGTATGATGATCAAAGACATGGCACTAATTCGTAAAGCTACCGACTACTAGGAAGTGAAATAAAGCTCGGTCGACACTCCTACAAAGTGTATTGGTTTGATCCATGAAACATTGCAGTCTAATCTGTACATTCAAGTCTCAAAATTGAAACTGTATCGACTAATTAACGGTTAGT]

[+] EMBL CD086370             [CTACAAACCACTTTTCGAAAATCAACACTCGTTTCGGCCCAAAACACGCAACCAGTAGGTCATATTTGTTTACTTCTGTCCATTATAAAACTATGTTTCTTGAGAAACCTTAGATACTAACATGAAGTGGAAAATCAAAATTCAGAACAATTCACAAACGAAATTACTATTGACTAATGAGAACGAACTCGCATTCCCATACACATCTCTAGCAGTGACATTCTCACAGCACTGATTGGTTAAATAATGTCGAATAGGGTAATCTTTAGTGATTTTTAGAACATGTGGTCGGGATTTTAAACCACAAATGTAATTATTGACAATCATAGCCAAACAACTAAAGTATTTTACCACATTTAGATAGTTCTATGAGAATTAAATACCACCAACAATTTGATTGCAATTTTTACGGACTCAGACTGCTCGGATATATGCTTGTGTAGATAACTTTCCCTTATTTTACTTTACGAATGAGCCATGAGCAGATTATAGAAACTTGATAGTATTTGCGAACACTATGTTTAAATT                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD190116             [                                                                                                                                                                                                                                                                                                                                                                                                                                               ATGCTTGTGTAGATAACTTTCCCTTATTTTACTTTACGAATGAGCCATGAGCAGATTATAGAAACTTGATAGTATTTGCGAACACTATGTTTAAATTACTTAGTGTCAGTCGCATAGTATAATGCGAAGCACATAAACCAGTGAGTGAATTTATAAACCTTCAGTGACTAAAGTGATTAAGATATGTCACCATGTCTAGTGTGCTCTCCTAATTGAAGTATGATGATCAAAGACATGGCACTAATTCGTAAAGCTACCGACTACTAGGAAGTGAAATAAAGCTCGGTCGACACTCCTACAAAGTGTATTGGTTTGATCCATGAAACATTGCAGTCTAATCTGTACATTCAAGTCTCAAAATTGAAACTGTATCGACTAATTAACGGTTAGT]




>consensus_4714#0
CTACAAACCACTTTTCGAAAATCAACACTCGTTTCGGCCCAAAACACGCAACCAGTAGGT
CATATTTGTTTACTTCTGTCCATTATAAAACTATGTTTCTTGAGAAACCTTAGATACTAA
CATGAAGTGGAAAATCAAAATTCAGAACAATTCACAAACGAAATTACTATTGACTAATGA
GAACGAACTCGCATTCCCATACACATCTCTAGCAGTGACATTCTCACAGCACTGATTGGT
TAAATAATGTCGAATAGGGTAATCTTTAGTGATTTTTAGAACATGTGGTCGGGATTTTAA
ACCACAAATGTAATTATTGACAATCATAGCCAAACAACTAAAGTATTTTACCACATTTAG
ATAGTTCTATGAGAATTAAATACCACCAACAATTTGATTGCAATTTTTACGGACTCAGAC
TGCTCGGATATATGCTTGTGTAGATAACTTTCCCTTATTTTACTTTACGAATGAGCCATG
AGCAGATTATAGAAACTTGATAGTATTTGCGAACACTATGTTTAAATTACTTAGTGTCAG
TCGCATAGTATAATGCGAAGCACATAAACCAGTGAGTGAATTTATAAACCTTCAGTGACT
AAAGTGATTAAGATATGTCACCATGTCTAGTGTGCTCTCCTAATTGAAGTATGATGATCA
AAGACATGGCACTAATTCGTAAAGCTACCGACTACTAGGAAGTGAAATAAAGCTCGGTCG
ACACTCCTACAAAGTGTATTGGTTTGATCCATGAAACATTGCAGTCTAATCTGTACATTC
AAGTCTCAAAATTGAAACTGTATCGACTAATTAACGGTTAGT

consensusID : consensus_4714#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 89
fasta sequence

                              [TTCAATGTTGCACTTTAGTCACTGAAGGTTTATAAATTCACTCACTGGTTTATGTGCTTCGCATTATACTATGCGACTGACACTAAGTA]

[+] EMBL CD087372             [TTCAATGTTGCACTTTAGTCACTGAAGGTTTATAAATTCACTCACTGGTTTATGTGCTTCGCATTATACTATGCGACTGACACTAAGTA]




>consensus_4714#1
TTCAATGTTGCACTTTAGTCACTGAAGGTTTATAAATTCACTCACTGGTTTATGTGCTTC
GCATTATACTATGCGACTGACACTAAGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4714#0      CTACAAACCACTTTTCGAAAATCAACACTCGTTTCGGCCCAAAACACGCAACCAGTAGGT 60
consensus_4714#1      ------------------------------------------------------------
                                                                                  

consensus_4714#0      CATATTTGTTTACTTCTGTCCATTATAAAACTATGTTTCTTGAGAAACCTTAGATACTAA 120
consensus_4714#1      ------------------------------------------------------------
                                                                                  

consensus_4714#0      CATGAAGTGGAAAATCAAAATTCAGAACAATTCACAAACGAAATTACTATTGACTAATGA 180
consensus_4714#1      ------------------------------------------------------------
                                                                                  

consensus_4714#0      GAACGAACTCGCATTCCCATACACATCTCTAGCAGTGACATTCTCACAGCACTGATTGGT 240
consensus_4714#1      ------------------------------------------------------------
                                                                                  

consensus_4714#0      TAAATAATGTCGAATAGGGTAATCTTTAGTGATTTTTAGAACATGTGGTCGGGATTTTAA 300
consensus_4714#1      ------------------------------------------------------------
                                                                                  

consensus_4714#0      ACCACAAATGTAATTATTGACAATCATAGCCAAACAACTAAAGTATTTTACCACATTTAG 360
consensus_4714#1      ------------------------------------------------------------
                                                                                  

consensus_4714#0      ATAGTTCTATGAGAATTAAATACCACCAACAATTTGATTGCAATTTTTACGGACTCAGAC 420
consensus_4714#1      --------------------------------TTCAATGTTGCACTTTA--GTCACTGAA 26
                                                      **  **       ****  * * * ** 

consensus_4714#0      TGCTCGGATATATGCTTGTGTAGATAACTTTCCCTTATTTTACTTTACGAATGAGCCATG 480
consensus_4714#1      GGTTTATAAATTCACTCACTGGTTTATGTGCTTCGCATTATACTATGCGACTGACAC-TA 85
                       * *   * **   **        **  *    *  *** **** * *** ***  * * 

consensus_4714#0      AGCAGATTATAGAAACTTGATAGTATTTGCGAACACTATGTTTAAATTACTTAGTGTCAG 540
consensus_4714#1      AGTA-------------------------------------------------------- 89
                      ** *                                                        

consensus_4714#0      TCGCATAGTATAATGCGAAGCACATAAACCAGTGAGTGAATTTATAAACCTTCAGTGACT 600
consensus_4714#1      ------------------------------------------------------------
                                                                                  

consensus_4714#0      AAAGTGATTAAGATATGTCACCATGTCTAGTGTGCTCTCCTAATTGAAGTATGATGATCA 660
consensus_4714#1      ------------------------------------------------------------
                                                                                  

consensus_4714#0      AAGACATGGCACTAATTCGTAAAGCTACCGACTACTAGGAAGTGAAATAAAGCTCGGTCG 720
consensus_4714#1      ------------------------------------------------------------
                                                                                  

consensus_4714#0      ACACTCCTACAAAGTGTATTGGTTTGATCCATGAAACATTGCAGTCTAATCTGTACATTC 780
consensus_4714#1      ------------------------------------------------------------
                                                                                  

consensus_4714#0      AAGTCTCAAAATTGAAACTGTATCGACTAATTAACGGTTAGT 822
consensus_4714#1      ------------------------------------------