These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 822 fasta sequence [CTACAAACCACTTTTCGAAAATCAACACTCGTTTCGGCCCAAAACACGCAACCAGTAGGTCATATTTGTTTACTTCTGTCCATTATAAAACTATGTTTCTTGAGAAACCTTAGATACTAACATGAAGTGGAAAATCAAAATTCAGAACAATTCACAAACGAAATTACTATTGACTAATGAGAACGAACTCGCATTCCCATACACATCTCTAGCAGTGACATTCTCACAGCACTGATTGGTTAAATAATGTCGAATAGGGTAATCTTTAGTGATTTTTAGAACATGTGGTCGGGATTTTAAACCACAAATGTAATTATTGACAATCATAGCCAAACAACTAAAGTATTTTACCACATTTAGATAGTTCTATGAGAATTAAATACCACCAACAATTTGATTGCAATTTTTACGGACTCAGACTGCTCGGATATATGCTTGTGTAGATAACTTTCCCTTATTTTACTTTACGAATGAGCCATGAGCAGATTATAGAAACTTGATAGTATTTGCGAACACTATGTTTAAATTACTTAGTGTCAGTCGCATAGTATAATGCGAAGCACATAAACCAGTGAGTGAATTTATAAACCTTCAGTGACTAAAGTGATTAAGATATGTCACCATGTCTAGTGTGCTCTCCTAATTGAAGTATGATGATCAAAGACATGGCACTAATTCGTAAAGCTACCGACTACTAGGAAGTGAAATAAAGCTCGGTCGACACTCCTACAAAGTGTATTGGTTTGATCCATGAAACATTGCAGTCTAATCTGTACATTCAAGTCTCAAAATTGAAACTGTATCGACTAATTAACGGTTAGT] [+] EMBL CD086370 [CTACAAACCACTTTTCGAAAATCAACACTCGTTTCGGCCCAAAACACGCAACCAGTAGGTCATATTTGTTTACTTCTGTCCATTATAAAACTATGTTTCTTGAGAAACCTTAGATACTAACATGAAGTGGAAAATCAAAATTCAGAACAATTCACAAACGAAATTACTATTGACTAATGAGAACGAACTCGCATTCCCATACACATCTCTAGCAGTGACATTCTCACAGCACTGATTGGTTAAATAATGTCGAATAGGGTAATCTTTAGTGATTTTTAGAACATGTGGTCGGGATTTTAAACCACAAATGTAATTATTGACAATCATAGCCAAACAACTAAAGTATTTTACCACATTTAGATAGTTCTATGAGAATTAAATACCACCAACAATTTGATTGCAATTTTTACGGACTCAGACTGCTCGGATATATGCTTGTGTAGATAACTTTCCCTTATTTTACTTTACGAATGAGCCATGAGCAGATTATAGAAACTTGATAGTATTTGCGAACACTATGTTTAAATT ] [+] EMBL CD190116 [ ATGCTTGTGTAGATAACTTTCCCTTATTTTACTTTACGAATGAGCCATGAGCAGATTATAGAAACTTGATAGTATTTGCGAACACTATGTTTAAATTACTTAGTGTCAGTCGCATAGTATAATGCGAAGCACATAAACCAGTGAGTGAATTTATAAACCTTCAGTGACTAAAGTGATTAAGATATGTCACCATGTCTAGTGTGCTCTCCTAATTGAAGTATGATGATCAAAGACATGGCACTAATTCGTAAAGCTACCGACTACTAGGAAGTGAAATAAAGCTCGGTCGACACTCCTACAAAGTGTATTGGTTTGATCCATGAAACATTGCAGTCTAATCTGTACATTCAAGTCTCAAAATTGAAACTGTATCGACTAATTAACGGTTAGT] consensusID : consensus_4714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 89 fasta sequence [TTCAATGTTGCACTTTAGTCACTGAAGGTTTATAAATTCACTCACTGGTTTATGTGCTTCGCATTATACTATGCGACTGACACTAAGTA] [+] EMBL CD087372 [TTCAATGTTGCACTTTAGTCACTGAAGGTTTATAAATTCACTCACTGGTTTATGTGCTTCGCATTATACTATGCGACTGACACTAAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4714#0 CTACAAACCACTTTTCGAAAATCAACACTCGTTTCGGCCCAAAACACGCAACCAGTAGGT 60 consensus_4714#1 ------------------------------------------------------------ consensus_4714#0 CATATTTGTTTACTTCTGTCCATTATAAAACTATGTTTCTTGAGAAACCTTAGATACTAA 120 consensus_4714#1 ------------------------------------------------------------ consensus_4714#0 CATGAAGTGGAAAATCAAAATTCAGAACAATTCACAAACGAAATTACTATTGACTAATGA 180 consensus_4714#1 ------------------------------------------------------------ consensus_4714#0 GAACGAACTCGCATTCCCATACACATCTCTAGCAGTGACATTCTCACAGCACTGATTGGT 240 consensus_4714#1 ------------------------------------------------------------ consensus_4714#0 TAAATAATGTCGAATAGGGTAATCTTTAGTGATTTTTAGAACATGTGGTCGGGATTTTAA 300 consensus_4714#1 ------------------------------------------------------------ consensus_4714#0 ACCACAAATGTAATTATTGACAATCATAGCCAAACAACTAAAGTATTTTACCACATTTAG 360 consensus_4714#1 ------------------------------------------------------------ consensus_4714#0 ATAGTTCTATGAGAATTAAATACCACCAACAATTTGATTGCAATTTTTACGGACTCAGAC 420 consensus_4714#1 --------------------------------TTCAATGTTGCACTTTA--GTCACTGAA 26 ** ** **** * * * ** consensus_4714#0 TGCTCGGATATATGCTTGTGTAGATAACTTTCCCTTATTTTACTTTACGAATGAGCCATG 480 consensus_4714#1 GGTTTATAAATTCACTCACTGGTTTATGTGCTTCGCATTATACTATGCGACTGACAC-TA 85 * * * ** ** ** * * *** **** * *** *** * * consensus_4714#0 AGCAGATTATAGAAACTTGATAGTATTTGCGAACACTATGTTTAAATTACTTAGTGTCAG 540 consensus_4714#1 AGTA-------------------------------------------------------- 89 ** * consensus_4714#0 TCGCATAGTATAATGCGAAGCACATAAACCAGTGAGTGAATTTATAAACCTTCAGTGACT 600 consensus_4714#1 ------------------------------------------------------------ consensus_4714#0 AAAGTGATTAAGATATGTCACCATGTCTAGTGTGCTCTCCTAATTGAAGTATGATGATCA 660 consensus_4714#1 ------------------------------------------------------------ consensus_4714#0 AAGACATGGCACTAATTCGTAAAGCTACCGACTACTAGGAAGTGAAATAAAGCTCGGTCG 720 consensus_4714#1 ------------------------------------------------------------ consensus_4714#0 ACACTCCTACAAAGTGTATTGGTTTGATCCATGAAACATTGCAGTCTAATCTGTACATTC 780 consensus_4714#1 ------------------------------------------------------------ consensus_4714#0 AAGTCTCAAAATTGAAACTGTATCGACTAATTAACGGTTAGT 822 consensus_4714#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||