cluster # 4719

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Schistosoma mansoni
cluster # 4719 cluster # 4719 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4719#0 length = 565 sequences # 2

consensus_4719#1 length = 301 sequences # 1

consensusID : consensus_4719#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 565
fasta sequence

                              [TGCTCGAAGTCTAATTTTTTTGCCTATAGGTACTAACGAAGTTTACGCTTAGTGTTGTTTATTGATCGTCGGTATTATCACCTGGATTATTTGACCTTTTGCGTTTTTCCACAATCAAATTTATAGGATCATTTAGTTTGGTTTTTACAACTCTTGAAGAAGTCTTTACGAAGCGCTTATAACATATCGTGCGCATTTGACGTTTCGATTAATATCAATAGGAGTTTCTCTTCGTTTTGATTGTTAGTTACAGTGACATGGCAGAAAACAAAAAATTAGATGATGACGTCACCGTTGTCATAGATAAACCAGATGATGTAAAACTGCAGCGATCTATCGGTATTGTAACCAGTATCACCATCATAGTANGATCAATGATTGGCTCAGGAATATTTGTCAGTCCTACTGGTATTTTGATGAATGTCGGAAGTATAGGAGCTAGTCTAATTATATGGGTTGCATGCGGGATCTTCAGTATGCTCGGAGCGTACTGTTATGCAGAACTTGGCACGATAATAGAGAGATCTGGAGGGGATTATATTTATGTATATGAAGCATTTGGACC]

[+] EMBL CD201935             [TGCTCGAAGTCTAATTTTTTTGCCTATAGGTACTAACGAAGTTTACGCTTAGTGTTGTTTATTGATCGTCGGTATTATCACCTGGATTATTTGACCTTTTGCGTTTTTCCACAATCAAATTTATAGGATCATTTAGTTTGGTTTTTACAACTCTTGAAGAAGTCTTTACGAAGCGCTTATAACATATCGTGCGCATTTGACGTTTCGATTAATATCAATAGGAGTTTCTCTTCGTTTTGATTGTTAGTTACAGTGACATGGCAGAAAACAAAAAATTAGATGATGACGTCACCGTTGTCATAGATAAACCAGATGATGTAAAACTGCAGCGATCTATCGGTATTGTAACCAGTATCACCATCATAGTANGATCAATGATTGGCTCAGGAATATTTGTCAGTCCTACTGGTATTTTGATGAATGTCGGAAGTATAGGAGCTAGTCTAATTATATGGGTTGCATGCGGGATCTTCAGTATGCTCGGAGCGTACTGTTATGCAGAACTTGGCACGATAATAGAGAGATCTGGAGGGGATTATATTTATGTATAT              ]
[+] EMBL CD126273             [                                                                                                                                                                                                                                                                                                                                   CTGCAGCGATCTATCGGTATTGTAACCAGTATCACCATCATAGTAGGATCAATGATTGGCTCAGGAATATTTGTCAGTCCTACTGGTATTTTGATGAATGTCGGAAGTATAGGAGCTAGTCTAATTATATGGGTTGCATGCGGGATCTTCAGTATGCTCGGAGCGTACTGTTATGCAGAACTTGGCACGATAATAGAGAGATCTGGAGGGGATTATATTTATGTATATGAAGCATTTGGACC]




>consensus_4719#0
TGCTCGAAGTCTAATTTTTTTGCCTATAGGTACTAACGAAGTTTACGCTTAGTGTTGTTT
ATTGATCGTCGGTATTATCACCTGGATTATTTGACCTTTTGCGTTTTTCCACAATCAAAT
TTATAGGATCATTTAGTTTGGTTTTTACAACTCTTGAAGAAGTCTTTACGAAGCGCTTAT
AACATATCGTGCGCATTTGACGTTTCGATTAATATCAATAGGAGTTTCTCTTCGTTTTGA
TTGTTAGTTACAGTGACATGGCAGAAAACAAAAAATTAGATGATGACGTCACCGTTGTCA
TAGATAAACCAGATGATGTAAAACTGCAGCGATCTATCGGTATTGTAACCAGTATCACCA
TCATAGTANGATCAATGATTGGCTCAGGAATATTTGTCAGTCCTACTGGTATTTTGATGA
ATGTCGGAAGTATAGGAGCTAGTCTAATTATATGGGTTGCATGCGGGATCTTCAGTATGC
TCGGAGCGTACTGTTATGCAGAACTTGGCACGATAATAGAGAGATCTGGAGGGGATTATA
TTTATGTATATGAAGCATTTGGACC

consensusID : consensus_4719#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence

                              [CCACGGACGCATCAATAAATTATGATGATGACGTCACCGTGTCATAGATAAACCAGATGATGTAAAACTGCAGCGATCTATCGGTATTGTAACCAGTATCACCATCATAGTAGGATCAATGATTGGCTCAGGAATATTTGTCAGTCCTACTGGTATTTTGATGAATGTCGGAAGTATAGGAGCTAGTCTAATTATATGGGTTGCATGCGGGATCTTCAGTATGCTCGGAGCGTACTGTTATGCAGAACTTGGCACGATAATAGAGAGATCTGGAGGGGATTATATTTATGTATATGAATGC]

[+] EMBL CD126783             [CCACGGACGCATCAATAAATTATGATGATGACGTCACCGTGTCATAGATAAACCAGATGATGTAAAACTGCAGCGATCTATCGGTATTGTAACCAGTATCACCATCATAGTAGGATCAATGATTGGCTCAGGAATATTTGTCAGTCCTACTGGTATTTTGATGAATGTCGGAAGTATAGGAGCTAGTCTAATTATATGGGTTGCATGCGGGATCTTCAGTATGCTCGGAGCGTACTGTTATGCAGAACTTGGCACGATAATAGAGAGATCTGGAGGGGATTATATTTATGTATATGAATGC]




>consensus_4719#1
CCACGGACGCATCAATAAATTATGATGATGACGTCACCGTGTCATAGATAAACCAGATGA
TGTAAAACTGCAGCGATCTATCGGTATTGTAACCAGTATCACCATCATAGTAGGATCAAT
GATTGGCTCAGGAATATTTGTCAGTCCTACTGGTATTTTGATGAATGTCGGAAGTATAGG
AGCTAGTCTAATTATATGGGTTGCATGCGGGATCTTCAGTATGCTCGGAGCGTACTGTTA
TGCAGAACTTGGCACGATAATAGAGAGATCTGGAGGGGATTATATTTATGTATATGAATG
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4719#0      TGCTCGAAGTCTAATTTTTTTGCCTATAGGTACTAACGAAGTTTACGCTTAGTGTTGTTT 60
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      ATTGATCGTCGGTATTATCACCTGGATTATTTGACCTTTTGCGTTTTTCCACAATCAAAT 120
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      TTATAGGATCATTTAGTTTGGTTTTTACAACTCTTGAAGAAGTCTTTACGAAGCGCTTAT 180
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      AACATATCGTGCGCATTTGACGTTTCGATTAATATCAATAGGAGTTTCTCTTCGTTTTGA 240
consensus_4719#1      ------------------------------------------------------------
                                                                                  

consensus_4719#0      TTGTTAGTTACAGTGACATGGCAGAAAACAAAAAATTA-GATGATGACGTCACCGTTGTC 299
consensus_4719#1      ---------------CCACGG-ACGCATCAATAAATTATGATGATGACGTCACCGT-GTC 43
                                      ** ** *   * *** ****** ***************** ***

consensus_4719#0      ATAGATAAACCAGATGATGTAAAACTGCAGCGATCTATCGGTATTGTAACCAGTATCACC 359
consensus_4719#1      ATAGATAAACCAGATGATGTAAAACTGCAGCGATCTATCGGTATTGTAACCAGTATCACC 103
                      ************************************************************

consensus_4719#0      ATCATAGTANGATCAATGATTGGCTCAGGAATATTTGTCAGTCCTACTGGTATTTTGATG 419
consensus_4719#1      ATCATAGTAGGATCAATGATTGGCTCAGGAATATTTGTCAGTCCTACTGGTATTTTGATG 163
                      ********* **************************************************

consensus_4719#0      AATGTCGGAAGTATAGGAGCTAGTCTAATTATATGGGTTGCATGCGGGATCTTCAGTATG 479
consensus_4719#1      AATGTCGGAAGTATAGGAGCTAGTCTAATTATATGGGTTGCATGCGGGATCTTCAGTATG 223
                      ************************************************************

consensus_4719#0      CTCGGAGCGTACTGTTATGCAGAACTTGGCACGATAATAGAGAGATCTGGAGGGGATTAT 539
consensus_4719#1      CTCGGAGCGTACTGTTATGCAGAACTTGGCACGATAATAGAGAGATCTGGAGGGGATTAT 283
                      ************************************************************

consensus_4719#0      ATTTATGTATATGAA-GCATTTGGACC 565
consensus_4719#1      ATTTATGTATATGAATGC--------- 301
                      *************** **